Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20424 LG5 22802280 22804886 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 22802396 synonymous_variant p.Val646Val
C/T 22802401 missense_variant p.Val645Ile
C/G 22802420 missense_variant p.Leu638Phe
C/A 22802426 synonymous_variant p.Leu636Leu
A/G 22802427 missense_variant p.Leu636Pro
T/A 22802429 synonymous_variant p.Ser635Ser
A/G 22802435 synonymous_variant p.Ile633Ile
G/C 22802438 missense_variant p.Phe632Leu
A/T 22802439 missense_variant p.Phe632Tyr
T/G 22802448 missense_variant p.Gln629Pro
A/G 22802450 synonymous_variant p.Cys628Cys
C/G 22802451 missense_variant p.Cys628Ser
T/G 22802453 synonymous_variant p.Leu627Leu
A/C 22802463 missense_variant p.Ile624Ser
A/G 22802469 missense_variant p.Val622Ala
T/C 22802474 stop_retained_variant p.Ter620Ter
A/G 22802476 stop_lost p.Ter620Glnext*?
T/A 22802477 stop_lost p.Ter619Tyrext*?
A/T 22802480 synonymous_variant p.Val618Val
C/G 22802482 missense_variant p.Val618Leu
C/A,T 22802483 missense_variant p.Leu617Phe
C/T 22802489 synonymous_variant p.Lys615Lys
G/C 22802493 stop_gained p.Ser614*
C/T 22802498 synonymous_variant p.Leu612Leu
A/G 22802499 missense_variant p.Leu612Pro
G/A,T 22802504 synonymous_variant p.Leu610Leu
T/A 22802510 stop_lost p.Ter608Tyrext*?
T/C 22802520 missense_variant p.Gln605Arg
G/T 22802526 missense_variant p.Pro603His
A/G 22802541 missense_variant p.Val598Ala
A/T 22802554 missense_variant p.Leu594Met
T/G 22802571 missense_variant p.Asn588Thr
G/T 22802575 missense_variant p.Pro587Thr
A/C 22802577 missense_variant p.Leu586Arg
G/T 22802588 synonymous_variant p.Gly582Gly
G/A 22802600 synonymous_variant p.Pro578Pro
T/C 22802621 synonymous_variant p.Thr571Thr
G/A 22802622 missense_variant p.Thr571Ile
T/A 22802624 missense_variant p.Leu570Phe
T/G 22802628 missense_variant p.Asp569Ala
C/T 22802630 synonymous_variant p.Leu568Leu
T/G 22802633 missense_variant p.Leu567Phe
A/G 22802636 synonymous_variant p.Asn566Asn
T/C 22802649 missense_variant p.Asn562Ser
G/A 22802654 synonymous_variant p.Asp560Asp
T/C 22802655 missense_variant p.Asp560Gly
T/C 22802663 synonymous_variant p.Lys557Lys
A/C 22802670 missense_variant p.Ile555Ser
C/G 22802672 synonymous_variant p.Ala554Ala
G/A 22802673 missense_variant p.Ala554Val
C/A 22802676 missense_variant p.Arg553Met
A/G 22802684 synonymous_variant p.Thr550Thr
G/T 22802685 missense_variant p.Thr550Asn
G/T 22803175 missense_variant p.Arg387Ser
C/T 22803351 missense_variant p.Arg328Gln
A/C 22803354 missense_variant p.Leu327Arg
C/T 22803489 missense_variant p.Gly282Glu
C/T 22803801 downstream_gene_variant
C/T 22803843 downstream_gene_variant
C/G 22803851 downstream_gene_variant
A/C 22804034 downstream_gene_variant
T/C 22804041 downstream_gene_variant
A/T 22804053 downstream_gene_variant
G/T 22804063 downstream_gene_variant
G/A 22804124 missense_variant p.Pro255Ser
A/G 22804137 synonymous_variant p.Asp250Asp
T/C 22804141 missense_variant p.Asn249Ser
G/A 22804152 synonymous_variant p.Ile245Ile
A/G 22804162 missense_variant p.Ile242Thr
A/C 22804167 synonymous_variant p.Leu240Leu
C/A 22804190 missense_variant p.Asp233Tyr
T/A 22804191 synonymous_variant p.Ser232Ser
A/C 22804223 missense_variant p.Cys222Gly
G/A 22804230 synonymous_variant p.Ile219Ile
T/A 22804582 missense_variant p.Lys102Met
A/T 22804653 missense_variant p.Asp78Glu
T/G 22804656 missense_variant p.Glu77Asp
G/T 22804666 missense_variant p.Ser74Tyr
C/A 22804803 synonymous_variant p.Val28Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20424.1
MAELFLFSIAESLIAKLASHAFQEASRVVGLYHDLRNLRKTLSLVKAVLLDAQQKQDHNHQLREWLTHLKTVFSEAEDVLDEFECQTLQNKVVKAHGNTKDKVSHFLSTSNPLLFRYKMTQQIKYINKRLDKVAAHRHKFSLQIIDVDTRVVYRRDMTHSRVSDSDVIGRKNDKEKIIELLMQQNPNDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVPPHQQNLNIYEIAAIWGSLGLIALPKTSRTLEDVANQYLHELLSRSFLQDFETFGTKFRFRIHDLVHDLALFVATDECLHVNFKIQNIPDNVRHLSFAESSLFGNLVTKKSAVVRSVLFSNGAAAAKDEALLNTCLSKFKCLRVLDLHGSTCKTLPRAIAKMKHLRYLDISENLNIKRLPDSICKLQSLQVLSIKRCKKLEILPKGLRKLISLRSLDFSTKQTILPLNEIAQLGSLEYLVIDSCHNVESVFGGVKFHALKTLVVRNCQSLKSLWLDGQNFPELETLIVADCGDLDLDLWKGDHEKERPKLKLKFIGFNSLSQLVALPKWLQEAAKSLQCLFVSNCHNIETLPDWLTTLTDLKALGLINCPNLVSMSDNIHYLTALESLKIRGCANLYKKYEPNVGEFWPKISHIKNIVIDEKEEPMKKSQT*


CDS Sequence:
>Vu_20424.1
ATGGCCGAATTATTTCTGTTCAGCATAGCAGAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGAGTGGTGGGTTTATACCACGATCTTCGAAACCTTAGAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCACTCATCTTAAAACTGTCTTCTCCGAAGCCGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAACACCAAAGATAAGGTAAGTCACTTCTTATCCACTTCTAATCCACTTCTTTTTCGCTACAAGATGACACAACAAATTAAATATATCAACAAAAGACTAGACAAGGTTGCAGCGCATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTTATCGGAGAGATATGACACACTCCCGTGTCAGTGATTCAGATGTGATAGGAAGAAAAAACGACAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTGTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAGACTACGCTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCAGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTCCTCCTCACCAACAGAATTTGAACATTTATGAAATAGCTGCGATTTGGGGATCACTTGGACTCATTGCACTACCAAAAACGAGTAGGACACTTGAAGATGTGGCAAATCAATATTTGCATGAACTCTTGTCAAGATCCTTTCTCCAAGATTTTGAAACCTTTGGCACTAAGTTTAGGTTTAGAATACATGATTTGGTGCATGATCTTGCCCTATTTGTTGCTACGGATGAGTGTCTACATGTGAATTTCAAAATTCAAAATATTCCAGATAATGTTCGTCATCTGTCTTTTGCCGAAAGCAGTTTGTTCGGAAATTTAGTCACCAAAAAATCAGCAGTTGTGAGATCCGTACTGTTTTCAAATGGTGCAGCAGCTGCCAAGGATGAAGCTTTACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACATGGTTCGACATGCAAGACTTTGCCCCGTGCCATTGCTAAGATGAAACATTTGAGATATTTGGACATAAGCGAAAATCTCAACATTAAGAGACTCCCAGACTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTCAATTAAGAGATGCAAGAAGCTGGAAATATTGCCCAAAGGATTAAGAAAACTAATCAGTCTCCGTTCTTTGGACTTTAGCACAAAGCAAACTATTTTGCCTTTGAACGAGATCGCACAATTGGGATCGCTTGAATACTTGGTCATTGATTCATGCCATAATGTGGAGTCCGTCTTTGGAGGGGTGAAATTCCATGCTCTTAAAACATTGGTAGTTCGGAACTGTCAGAGTCTAAAGTCATTGTGGCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGATTGTTGCAGACTGCGGTGATTTGGACTTGGACTTGTGGAAGGGCGATCATGAAAAAGAAAGACCCAAACTGAAGTTAAAATTTATTGGATTTAACAGTTTATCACAGCTGGTGGCCCTGCCTAAATGGCTTCAGGAAGCTGCCAAATCCTTACAGTGCTTGTTTGTTTCAAATTGTCACAATATTGAAACCCTTCCAGATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGGTTTAATAAATTGTCCAAATTTGGTATCTATGTCAGATAACATTCATTACCTCACTGCACTTGAAAGTTTGAAAATTAGAGGTTGTGCTAACTTATATAAAAAGTATGAACCCAATGTCGGAGAGTTTTGGCCCAAAATATCACACATCAAGAACATTGTGATTGATGAAAAAGAAGAACCTATGAAGAAGAGCCAGACATAG


Promoter Sequence:
>Vu_20424::LG5:22804886-22806886(-)
GCACTTGAATAAGACTTAAATCATATCATAGCAAAGTAGAATAACTAAAGCAATTAATTATGTGCATCTTGCACAAAGGAAACACAAATTACACAAGTGTAGGTCAAAAGCTGATTTCACAAGTTTTGGTGCAGAATAGAGGATCATATTACTTTTGGTGCAGTAAGTGGTTATCCAATCAAGAGTATGTGTAGTATGGAAGTTGTTATATACAACAAATGTAGTTATTCTTGACGATATATTTCACCATATTTATTGGTGCAGTAACTAGTTATTTACTCAATCCTATGTGATTATTTCTTAAGCCATAAACTATTTCAATGCATCAGTCCAAAACTCATACAATGGAGAAGAGCTGGAAATAATTACAAGCACCCTGAATTAAGGAAGAAAGACTTTCAAGATGAATAAACCACTAGCTTCGAATGTCCCACCCACCCCAAATATATTTTCCCAGTAGTTAAATTATTTCAGCCTTAAATAAAATGACCAGCACCGTAACGTTCATACCATACCCTTTTAAACCACTAATTAAAACCAAAAAGGACACTTAAATGAAATAGAAGCACCTTAAATGAAACAGAAGCACCAATTCATAAGATATAAGAAAATCAATAGCTAGAATTGATGACTTTAATGTATATACAAATAATATTCTATAGTACTTGATCGTTTATATATAATTCATAATCTACTCTTATTTTGTATAATATAATGCATTACATCAACTCCAAACAACAGTACACAAAACACTGCAGCATTTAAAAAAATTTAAGAAAATCTGCAGGTTAAAAAAAATGTTCACGATCTAGATAAAATACACTGAAAAGCTTACTGCAGCACTATAAAGTGATGGTTATATGTCTTGTAATATAGAATAAAGCAATGAAAGAAAGGTCATTTAATATTTGAAAAGTATAGTCTTGAGTAAACAACACAGTACATTGTAACTTGAACCTACTTCGTTAATATTTCCTAGGATCATGATCCATAACAAATTTATTATAGCAAAACAAAAAAATAGTTAGAAATCACGGCTGGTATTCAAGATACAGTGATAGATTAAAATAATTGAACAAAAGAATGTCTAAAGTATGGGATTATGGCCCAAAAGGAATAAAATTCTGCACTCCATATCAATTAGACTTGTACCGTAAAGAGTATGTGGTCCTAGATTTTAAAATTTGAGGAGCAACACGGCATGGCCAATTCTAACATCTATGTCATTTCCTTCCAATTATTTATTCCTCCTTTAAACGTTTTCTATGCTATAGCTCAAAATTTTGTAATAAACATACTATTACTCCTACAAAACCGACAGGTTCAATGAATATTGACAGTCAAAGTTCATGCATATTCCATCTCTCACAGAAACGTGTATCAGCACCTAGATAGATGGCATCTAAACAGATTCATGAGACAAATCAGAATACAGGCCAAACATACATTAATCATAGTTGGAAGGCCGAGATCTATTAGAGACAAGACCAAATTATAATATATAAATGAAATATAAATCTTATTTTACAAATCAATTTTGTGAAATTGAGTTAGACTTAAAAATTAACTTCTTAACTTTTAGTCTTTGAATTTCAATCAACTCCTTCGTATTCACAAAATTTATGTTAACTTGCTCATAGATACATCATATTTACCCTCTGGATATTCACGTGAAGAGGATTGAGTTGGACGCCATAAAACATCAGATATATTTTTAACAATTTTTTTATAATCATCTTATTTTTCAAATATAACAACCAATAAAATATCACTAACTTAATTTAATGTTCATTCATTGACGTTGGAAAGGACCTTAAAAGTCAAAAAAAACAGGAAACCTTTTTTACACTGGTGTATACTATAAAAATTTGTGGACACAACCGCAAAAAAGCCCAGACTAATATCAAGATATTTCTCATTTGCCCTCTCATTTCTTTTTAGCCGCTGCTGAAAATAATGCAACAAATGGCATTAGTTGTCGAGTAGTTCTGGAAACAACT


Gene Sequence:
>Vu_20424(-)
ATGGCCGAATTATTTCTGTTCAGCATAGCAGAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGAGTGGTGGGTTTATACCACGATCTTCGAAACCTTAGAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCACTCATCTTAAAACTGTCTTCTCCGAAGCCGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAACACCAAAGATAAGGTAAGTCACTTCTTATCCACTTCTAATCCACTTCTTTTTCGCTACAAGATGACACAACAAATTAAATATATCAACAAAAGACTAGACAAGGTTGCAGCGCATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTTATCGGAGAGATATGACACACTCCCGTGTCAGTGATTCAGATGTGATAGGAAGAAAAAACGACAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTGTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAGACTACGCTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCAGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTCCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAGCAACTGCAAAAGCAATTGAAAAGAACACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGCGGAGCAGGAAGTAAAGTTGTAGTGACCACACGTAGTCATTCCATTGCTTCTATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAGCAGGAGTCATTGTCTGTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAAGAAAAACATCCTCACTTAGTGAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCGAAATTTGAGGACAGTGAATGGGAATATGTGAGTGACAGTGAAATCTGGAATTTGCCTCAGAAAAAGGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTCATTCCCTAGTTATGAAATAGCTGCGATTTGGGGATCACTTGGACTCATTGCACTACCAAAAACGAGTAGGACACTTGAAGATGTGGCAAATCAATATTTGCATGAACTCTTGTCAAGATCCTTTCTCCAAGATTTTGAAACCTTTGGCACTAAGTTTAGGTTTAGAATACATGATTTGGTGCATGATCTTGCCCTATTTGTTGCTACGGATGAGTGTCTACATGTGAATTTCAAAATTCAAAATATTCCAGATAATGTTCGTCATCTGTCTTTTGCCGAAAGCAGTTTGTTCGGAAATTTAGTCACCAAAAAATCAGCAGTTGTGAGATCCGTACTGTTTTCAAATGGTGCAGCAGCTGCCAAGGATGAAGCTTTACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACATGGTTCGACATGCAAGACTTTGCCCCGTGCCATTGCTAAGATGAAACATTTGAGATATTTGGACATAAGCGAAAATCTCAACATTAAGAGACTCCCAGACTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTCAATTAAGAGATGCAAGAAGCTGGAAATATTGCCCAAAGGATTAAGAAAACTAATCAGTCTCCGTTCTTTGGACTTTAGCACAAAGCAAACTATTTTGCCTTTGAACGAGATCGCACAATTGGGATCGCTTGAATACTTGGTCATTGATTCATGCCATAATGTGGAGTCCGTCTTTGGAGGGGTGAAATTCCATGCTCTTAAAACATTGGTAGTTCGGAACTGTCAGAGTCTAAAGTCATTGTGGCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGATTGTTGCAGACTGCGGTGATTTGGACTTGGACTTGTGGAAGGGCGATCATGAAAAAGAAAGACCCAAACTGAAGTTAAAATTTATTGGATTTAACAGTTTATCACAGCTGGTGGCCCTGCCTAAATGGCTTCAGGAAGCTGCCAAATCCTTACAGTGCTTGTTTGTTTCAAATTGTCACAATATTGAAACCCTTCCAGATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGGTTTAATAAATTGTCCAAATTTGGTATCTATGTCAGATAACATTCATTACCTCACTGCACTTGAAAGTTTGAAAATTAGAGGTTGTGCTAACTTATATAAAAAGTATGAACCCAATGTCGGAGAGTTTTGGCCCAAAATATCACACATCAAGAACATTGTGATTGATGAAAAAGAAGAACCTATGAAGAAGAGCCAGACATAG