Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20420 LG5 22763136 22765564 putative disease resistance protein RGA1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 22763207 synonymous_variant p.Gly24Gly
G/A 22763222 synonymous_variant p.Thr29Thr
T/G 22763225 synonymous_variant p.Leu30Leu
C/T 22763255 synonymous_variant p.Ile40Ile
T/G 22763262 missense_variant p.Cys43Gly
T/C 22763269 missense_variant p.Leu45Pro
T/G 22763318 synonymous_variant p.Leu61Leu
T/C 22763323 missense_variant p.Ile63Thr
C/T 22763333 synonymous_variant p.Ile66Ile
A/G 22763344 missense_variant p.Asn70Ser
T/C 22763348 synonymous_variant p.Asp71Asp
C/A 22763358 missense_variant p.Pro75Thr
C/T 22763361 missense_variant p.Leu76Phe
T/C 22763362 missense_variant p.Leu76Pro
T/G 22763451 intron_variant
C/A 22763589 intron_variant
G/T 22763655 intron_variant
T/A 22763814 intron_variant
T/A 22763815 intron_variant
T/C 22763818 intron_variant
A/G 22763828 intron_variant
G/T 22763961 intron_variant
G/A 22763969 intron_variant
G/A 22763976 intron_variant
C/T 22764014 intron_variant
G/A 22764188 intron_variant
C/A 22764196 intron_variant
G/T 22764313 missense_variant p.Gly98Cys
A/T 22764338 missense_variant p.Asn106Ile
T/C 22764481 missense_variant p.Ser154Pro
A/G 22764668 missense_variant p.Gln216Arg
C/T 22764678 synonymous_variant p.Tyr219Tyr
C/A 22764684 synonymous_variant p.Leu221Leu
T/C 22764689 missense_variant p.Leu223Pro
T/A 22764699 missense_variant p.Asn226Lys
A/T 22764706 missense_variant p.Ser229Cys
A/T 22764710 stop_lost p.Ter230Leuext*?
G/A 22764715 missense_variant p.Val232Ile
T/C 22764730 splice_donor_variant&intron_variant
A/G 22764778 intron_variant
G/A 22764779 intron_variant
G/A 22764783 intron_variant
A/G 22764784 intron_variant
G/A 22764787 intron_variant
G/C 22764792 intron_variant
T/C 22764793 intron_variant
T/A 22764799 intron_variant
T/C 22764801 intron_variant
A/C 22764854 intron_variant
A/T 22765089 intron_variant
T/*,A 22765301 missense_variant p.Ser247Thr
C/T 22765325 missense_variant p.Arg255Cys
A/T 22765398 missense_variant p.Asn279Ile
C/T 22765435 synonymous_variant p.Asn291Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20420.1
MQQNPNDDDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFLLKMWVCVSDDFDIKQLIIKIINSANDEDVPLHQQNLNITKQIVLPVNEIAKLGSLEYLYIESCHNVESIFGGVKFPSLKILCVEDCRSLKSLSLDGQNFPELETLLVGVCGNLDLELWKGDHEEESLKLKLKLIEFSNLSQLVAMPKWVQEAANSLGCLVVSYCENIETLPDWLPTLTNLKSLQLIGCPNLFLRLSHLPLLVSLAFARLTRFCSSHSLGLSSNNFTGQIPFFVNNLTHLTGLFLEHNASRKCRSLWLTVEGLQPLLPGSGAVSLLQFDPGHERTGVPWK*


CDS Sequence:
>Vu_20420.1
ATGCAGCAGAATCCTAATGATGATGATGATGATACAAGTCTCTCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACGCTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCTATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTCCTCTTCACCAACAGAATTTGAACATCACAAAGCAAATTGTTTTGCCTGTGAATGAGATCGCCAAATTGGGGTCGCTTGAATACTTGTACATTGAATCATGCCATAATGTGGAGTCCATCTTTGGAGGCGTGAAATTCCCTTCTCTTAAAATATTATGCGTTGAGGATTGTCGGAGTCTAAAGTCATTGTCTCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGCTTGTTGGGGTCTGCGGTAATTTGGACTTGGAACTGTGGAAGGGCGATCATGAAGAAGAAAGCCTCAAGCTGAAGTTAAAATTGATTGAATTTTCAAATTTATCACAGCTGGTGGCCATGCCTAAATGGGTTCAGGAAGCTGCCAACTCCTTAGGGTGCTTGGTTGTTTCATATTGTGAAAATATTGAAACACTTCCAGATTGGTTACCAACTCTGACTAATCTGAAATCACTTCAGTTAATAGGTTGCCCAAATTTGTTCCTTCGCTTGTCTCACTTGCCCTTGCTCGTCTCACTCGCTTTTGCTCGTCTCACTCGCTTTTGCTCGTCTCACTCGCTTGGATTATCCTCCAACAACTTCACCGGTCAAATTCCTTTTTTCGTCAACAACTTAACCCACCTCACTGGCCTCTTCTTGGAACACAACGCCAGCAGGAAATGTAGATCTCTGTGGCTCACCGTTGAAGGCTTACAACCCCTTCTTCCCGGCTCCGGCGCCGTCTCCCTCCTCCAATTCGACCCCGGCCATGAGAGAACTGGTGTTCCGTGGAAGTAG


Promoter Sequence:
>Vu_20420::LG5:22761136-22763136(+)
GTTTCGGTATTCAACAAAACTTCCAAAAGGCGGTAGGTTCGGCCAAACGGTGATGGATACAGGTTCGGTCAACTGCGGTAGATGCAGTTTCCGTGAACGACAATTTCTTATTTCAGTGAACAGCATCCCAAAGCGCGCTCTCTCTCACGTAGCCTAGGAAATGAAATTTTTGAATACAAAAATATGAAACTGAAGAAGAAAAAACCCCTGAAACCCTAATTCTTCTCTTTCCACACCATTTTCCTTTTTTTTTAAGTTGACTATCTAGATTAATCACAAACTGACAAAGTTAAAAAATGGTCAAAGTTTAGAGTCAAAATATTATTATCCTATTTAATATACTCATAAACCATTAGATTTAATCCATGTCTCCTCTTACTTACTACTTCCTACACCTTTTTTTATCCTGTATCCCATGAATTATAATATTCTCATTTTAGCTTTTATTAAAAATATTAAAAACCCTGAATTTCTAATTTAATGTTTCCTTTCCTTCCTTAATTATCTATGAAGTGTCTTACACCTTCCTTTCTCTTGCTTCATTTTTTTCTTTCACACAAAATTATGCAGGATTGAAAGAGAAATCATCATTCTACATATGATTGGAAGTGAAAGATTGCCGGAGAAAGGAATTTTAGAGAAAATTAACCATGAGAAGAGATTTCTTAAACTATTTATATAAAAAAAATTAAATTCTAAAATAACTGTTTCATAAGGTATTTTTGAATTTAGAATATAAAATTTTTCAAAAATAATGTTTTCAATAATATTTTCAAATTTAAAAAATACTTTCTGAAAAACTTGTTTCAATTTTTTTTAATATTTCAAAATGATTATTCTAGAAAGTATTTCAAGCCTGTATAATATGGATTTCCCAATTAACAAATAGACAAATCGATTTTATGATGGGCCGTATGAACAGTTGGATTAAATGGATCGACCAGCACAATTAGCAATTTAAAGAGCATAAATTAAGCATAGAATGAAGACTATAATATTATAATCATGAATTTGATTCCCAACTTAGTCAAGAAAATATTGTTTTGTTCATCAAAATATTACTCACATTCAAAGACTTTCGCACTAATGACAATTAGTCCGACAAAAAATTCGCTTCATTTTGTGACTTTTTCCATTGTAGAACTAATCCGCAATAGAATTATATGGCTCAAAATTAATACGGTTTGACGGTACAATTTGTCCGTCCACTACCACAATATACTTCCTCGATCATCCCCTTATTTTAATTTCAATTATATTCTTAAGTTAAAAGTTTTTTATTTTTATTTAATTTTAAATAATTTAAAACCCTAATTTTACTCTTTTAGATATTCGCTTCCATTCCTTTGTTTGTTAAAGATACAAAAATTGTTAAAACATTAAAGATACAAAAGTCATATATAAAAAATATATATTTTACAAAATTATTACATTTATATATGTCTAAAATAAAAAAATATAAATATAAACTAATACAAATATACACTATTAAAATACATCAAAAATATATTAAAAAATAATAAATCAAAACATTTAAATTAAATTATTAAAATATCTCTAAAATTAATATTAAAAAATAAACTAATAAAACAAAACCTAAAATTTGAAAAAAAAAAAGTAAACTTTAAACTTCAGCGGATGTCAACATCCGTTTAAAGTTTACCTTTTTTAATTTTAGGGTTTATTCACACTGGAGGACGCGACGCACCACTGTAAGCACCAATGTACCAATGAGATCCGACACAATCAACATAGCTTGATCAATTCTTTCCACCACCAATCTTTGCCACTTTTTACGTATAACACCTAAGGAAGTATATTTTCACAGTGAAAGAAATAAAGGAAGAGAGAAAGAAATCTAAAACGTTAGAATGAAAGAAAAATTTGTCAATGAAACTAATAATAGATTATTAGTGGGATAGGTTGGGAGTGAATAAAAATTCAAAAATAATAAATTCAAAAATAATAACTTTAAAAAGAAAAGATCATACAGCTTTTGA


Gene Sequence:
>Vu_20420(+)
ATGCAGCAGAATCCTAATGATGATGATGATGATACAAGTCTCTCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACGCTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCTATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTCCTCTTCACCAACAGAATTTGAACATGTTGGATCTGGAGCAACTGCAAAAGCAATTGAAAAGAAAACTTTCCGGACAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGTGGAATAGGAAGTAAAGTTGTAGTGACCACAAGAAGTCATTCGATTGCTTCCATGATGGGCACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAGCAGGATTCTCTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAAGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCACTGGCAGTGAGAACACTAGGTAGTTTACTATTCTCGAAATTTGAGGAGAGTGAATGGGAATATGTGAGAGACGGTGAAATTTGGAATTTGCTTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCAATAGTTATAAAATGACTGCGCTTTGGGGGGCAAATGGGCTCATTGCACTACCAAAAACGAATAGAACACTTGAAAATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGAAAACTTCGGCACTTCTTACATTTTTAGAATACATGATTTGGTGCATGATCTAGCTCTATTTGTTGCAAAGGGTGAGTGTCTGTATGTAAGTTCCAACATTCAAAATATTCCAGAAAATGTTCGGCATCTGTCTTTTGCTGGAAGCAGTTTGGTATTGCCCAAAGGATTAAGAAAATTAATCAGTATCCGTCATTTGTTGTTTAGCACAAAGCAAATTGTTTTGCCTGTGAATGAGATCGCCAAATTGGGGTCGCTTGAATACTTGTACATTGAATCATGCCATAATGTGGAGTCCATCTTTGGAGGCGTGAAATTCCCTTCTCTTAAAATATTATGCGTTGAGGATTGTCGGAGTCTAAAGTCATTGTCTCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGCTTGTTGGGGTCTGCGGTAATTTGGACTTGGAACTGTGGAAGGGCGATCATGAAGAAGAAAGCCTCAAGCTGAAGTTAAAATTGATTGAATTTTCAAATTTATCACAGCTGGTGGCCATGCCTAAATGGGTTCAGGAAGCTGCCAACTCCTTAGGGTGCTTGGTTGTTTCATATTGTGAAAATATTGAAACACTTCCAGATTGGTTACCAACTCTGACTAATCTGAAATCACTTCAGTTAATAGGTTGCCCAAATTTGGTATCTATCTCAGATAACATTCATCACCTCACTGCACTTGAAAGTTTGAAGATTGAAGGTTGTGTTAACTTATATAAAAAATATGAACCCAATGTTGGAGAGTTTTGGCCCAAAATATCACACATAAAAAAGGTTGTGATTGATGAACCTAAGAAGAATTAAAGAAAGAGCCAGTCGAAAACTCCTTACTTTCTGTATGTGTTTTTCATAACGTTGATTTTTATTTTTAGGTTTAAATGCTTATTTCGTCACCATGTTAAGAGTTGAATTTCTGTTTAGTACCCGGTTTTAAAAATGTAGACATTGGGTCTCAAGATTGTCAAAATTGTATGAATTGAGTCTCTTCCGTTAAATGGACACAAAAGGAGTTAACTCCCAGCTGACGTGACGGAGAAATCTTCGTATTTTTCTTCTCTCTCCTCTGATTTTCCGAAATGCCCAGCTTTTTCTCTCTTTCCTATATATTTATTAAATATTTATTTATTTTCTCTCTCTTTCCTTCGCAACCTCTACCTCCAAACAACCACTTCTCCGGTGAGTTCCTTCGCTTGTCTCACTTGCCCTTGCTCGTCTCACTCGCTTTTGCTCGTCTCACTCGCTTTTGCTCGTCTCACTCGCTTGGATTATCCTCCAACAACTTCACCGGTCAAATTCCTTTTTTCGTCAACAACTTAACCCACCTCACTGGCCTCTTCTTGGAACACAACGCCAGCAGGAAATGTAGATCTCTGTGGCTCACCGTTGAAGGCTTACAACCCCTTCTTCCCGGCTCCGGCGCCGTCTCCCTCCTCCAATTCGACCCCGGCCATGAGAGAACTGGTGTTCCGTGGAAGTAG