Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20414 LG5 22690408 22694467 PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase PXC3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   chemical homeostasis, developmental growth involved in morphogenesis, cell differentiation, cell wall organization or biogenesis, regulation of biological quality, developmental cell growth, plant epidermis development, developmental cell growth, regionalization, developmental growth involved in morphogenesis, developmental cell growth, developmental cell growth, phloem or xylem histogenesis, shoot system morphogenesis, shoot system development, shoot system morphogenesis, cell morphogenesis, meristem structural organization, developmental cell growth, shoot system development
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein binding, transmembrane receptor protein tyrosine kinase activity
SNP Position Effect Amino acid change
G/A 22690603 5_prime_UTR_variant
A/C 22690604 5_prime_UTR_variant
C/T 22690618 5_prime_UTR_variant
A/T 22690673 splice_region_variant
C/A 22690793 intron_variant
G/C 22690814 intron_variant
A/C 22690818 intron_variant
G/T 22690960 5_prime_UTR_premature_start_codon_gain_variant
T/C 22691495 synonymous_variant p.Phe98Phe
G/T 22691546 missense_variant p.Leu115Phe
G/T 22691547 missense_variant p.Asp116Tyr
G/T 22691945 missense_variant p.Glu248Asp
C/T 22692159 stop_gained p.Gln320*
G/C 22692188 missense_variant p.Gln329His
G/T 22692204 stop_gained p.Gly335*
A/T 22692206 synonymous_variant p.Gly335Gly
G/T 22692222 missense_variant p.Asp341Tyr
A/T 22692233 synonymous_variant p.Ile344Ile
T/C 22692234 missense_variant p.Ser345Pro
A/T 22692236 synonymous_variant p.Ser345Ser
G/A 22692313 missense_variant p.Cys371Tyr
G/A 22692325 missense_variant p.Arg375Gln
G/C 22692344 missense_variant p.Leu381Phe
G/A 22692421 missense_variant p.Ser407Asn
G/A 22692614 synonymous_variant p.Leu471Leu
T/A 22692758 synonymous_variant p.Leu519Leu
T/A 22692776 synonymous_variant p.Ala525Ala
G/C 22692987 missense_variant p.Val596Leu
A/G 22692989 synonymous_variant p.Val596Val
T/A 22693127 synonymous_variant p.Thr642Thr
T/A 22693130 synonymous_variant p.Ile643Ile
T/C 22693217 synonymous_variant p.Val672Val
G/T 22693263 stop_gained p.Gly688*
G/C 22693302 missense_variant p.Ala701Pro
C/G 22693377 missense_variant p.His726Asp
C/T 22693388 synonymous_variant p.Ile729Ile
T/C 22693517 synonymous_variant p.Gly772Gly
C/T 22693864 synonymous_variant p.Thr806Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20414.1
MEALCLLHILLAWCMSCFELVGAELQEQAILQAINQELRVPGWGDANNSDYCTWQGVNCGNHSMVESLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGFIPPAFGNLSDLEVLDLSSNKIQGSIPPQLGGLRNLKSLNLSNNVLEGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGSISELQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGELPEEIGNCKALSSVRIGNNHLVGTIPKTIGNLSSLTYFEADNNNLSGEVVAEFSQCSNLTLLNLASNGFTGTIPQDFGQLMNLQELILSGNSLFGDIPISILSCKNLNKLDISNNRFNGTIPNEICNITRLQYLLLDQNFIRGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRISGNIPPELKGMLSLIEVNFSNNLLAGLVPTFVPFQKSPSSSFLGNKGLCGEPINPSCGTLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAEIVDESINDNPTIIAGTVFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKAEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFSWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN*


CDS Sequence:
>Vu_20414.1
ATGGAAGCTCTATGCTTGTTACACATTCTGCTAGCTTGGTGCATGTCATGTTTTGAGCTTGTTGGTGCTGAGCTTCAGGAGCAAGCTATATTACAGGCCATCAACCAAGAGCTTAGGGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCACTTGGCAGGGTGTCAACTGTGGTAACCACTCAATGGTGGAGAGCTTGGATCTGTCTCATCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATTCATTCCTCCTGCTTTTGGAAATTTATCTGATCTTGAAGTTTTGGATTTGTCTTCAAATAAGATCCAAGGTTCAATTCCACCTCAGTTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGAGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAATCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAATTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTCAATTTCTGAGCTTCAAATACTTAACTTGCACTCTAACCAGCTTGAAGGTCCAATACCAGCTAGCATTTTTGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGCGAACTTCCTGAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGAAACAACCATCTAGTAGGTACCATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATAATCTTTCTGGTGAGGTGGTGGCAGAATTTTCTCAGTGTTCTAATCTTACTCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAATCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTCATAAGAGGAGAGATCCCCCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATCAGGAACTTACAAATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGAATATCGGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGCAGGCCTGGTACCAACATTTGTACCATTCCAGAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGACTTTGTGGAGAGCCTATAAATCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCATCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGAGATTGTTGATGAGAGCATCAACGACAACCCAACTATAATTGCAGGGACTGTTTTTGTTGATAATCTCAAGCAAGCAGTAGACCTTGATGCTGTTGTTAAAGCAACTCTGAAAGACTCTAATAAGCTCAGCAGCGGGACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTTTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACTATTATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTCGTGCGTCCCATTGGCTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAACGGAACACTGGCTCAACTTCTCCATGAATCTACCCGGAAAGCTGAATATCAACCTGACTGGCCCTCTAGATTGTCCATTGCCATTGGCGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGATATTTCTTCTGGCAATGTTCTCTTGGATGCAAATTTCAAACCATTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTCGGTTACATACCTCCAGAATATGCATATACCATGCAAGTGACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACCAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGAGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCCTTTAGCTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCATTGCTGTGCACCGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTACGGGAAATAAAGCAAAACTGA


Promoter Sequence:
>Vu_20414::LG5:22688408-22690408(+)
TAGATAAAGATGTTATACTTTCTTAATACTTCCACATCATTATTTACATGGGTTAACTCTTTTATTAATTTAAATAGAAAAATTCAATTAAAAAATATATGAATTTTACATATTCAATATATCTGAACAAATTTAATGGAAAGTCACTTAAAGATAATCAAATTTTACCATACAATTAAAACTTAATTAAACTTGTATAAAATAACCTTTTATATAAAGTATACAATGCTAACCTGTGTAGTAATTAACGATGGTAATGATGACAGAGAGAACAATTAAAGGACAAAATATGCTTTCTAAAGTAATATGCTTTTTGACACCAGTGAATTTTTTAAACACGAATAGTAATTAATGGTGTACCTAGTTAATGTGATGTATTATCTGCCATTTAAAAATGACACACAGAGAATTAAGGTAAAACATAGAATTTTGCCACTTGTTAGCAAGCATATGGTTTGTCTCACTGCTTTGCGCAACCATGTCATTTTATTCACTCCATTCAAGAGATTTCGCTTTCCAATGGCAATATTGCATTGATTTCAATAACTGTTTGAGTTGTGTTGAGTGTTGTCTTCAAGAAGAAAGATAAGATTCTGATATCAGCATTAAGGTGAAGGTAGAGATTTAAAGCACCATAAGAAAGACTGACTGACCAGTTTGATTGCTCAATCATGCTTGAAATAAAGTTTAGGTGAATTGTAGGTAGCAAATGAATTTAAATACCTTATAATTGACATTCTAGAGTATATGTAAACTTCCAAGTTTGAATGCTTTGAATTCATAGGATTAGAAGTTTCACATATAAGTGAGGGAAGTTCAAAACACATCCAAGTACCTTATAATTGACACTGTAACTTGGTGAATGGTGATGGAATCACTGGCTCCATTGGTGTACTATAACTGAGATATAAACAGAATGTTACTAATTATCTTTCTGATTTAACATGCACCGAAACCCTTTTATCATGCATGCTTGTTAATGTTTCCCTTTCATGATTGAAGAAACTGGATTCATGAATGCTAGAAATGTAGGCTAAGTTTATAGGGAAGAAGAAAGTTTTGATCATTTAGGTGAAAATAAGATGCATGAATGGGAGCAGTAGATAGGGGCCCAGAAATACAGAACCTCTGTGAAAATTGTTTAGATATATTTATTGAACAAAAAATGAAATATATTCTGAAAAAGGGAAGTCTCATTCCCTATATAAAATAAGCCTACATTGAGGGAATCCTAGGATTAGATAATGTGATATTTGCAGCACAACTTTATTGTCTTCTCAAATCCATGATAATTTTGGGAAGAAACAATAGGCACAGCAAATTAATTTCCCATCCGGGCCCTTATTCCCCTCCTTCTATGACCAAGAAAATATTTGCTAGCTTCTGACATCCCTCCACCATCTCTGCTATGCATTTTCTCAATTACTTTAAATATGTAACAACAAATTAAACACTACACAGATTCACAACACTGAAAACACAGAAACTGTCTATCATTTTCTGCATTTGGTTAATATCTACATTTTCTTACCTATAACAAGTTTAAAAATTTAGTTACAAAAACTCGTAAGGACCATTGAGGACTTTATGACTCAAACTACACTTTTATGGATTACAAAAACTACTGAAATGTCAGTGACAATCAAGCACACGTTTTTTTTTTTTCAAAGAATGTATGTTCAATTTTCTACTGCTACCGAGCCAACTTTTGTTCGCTATTTGGCATCAATATCATGCAGAGTGAAGGGAGGGCTAAAGTTTAGTTTATCAATGAAAAATGCATTTTCCTATTTAGATTTTCATTTGGGGTATTTTTTTTTATTTGCTTTTCATTTTTCACCAATAGAAAGTAGAACATTAGAAAATAAAGATTTGATTTTTGAGGATGAGAATTGATGGCGCCCAATTATGCTCCGTCCCAAACAGAGAACGCTGTGTTAAAGTGTGCCCCACATGCAATGAGACAGGAGTTTTATGCAGCTTTCATTCAGTGATGACTG


Gene Sequence:
>Vu_20414(+)
GCCCATTTCTCGTGATGCCTACATCTACATGGCAAAGAATTTCATTCCCGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAGACATTAGAAAACACCTGGTCCGTGAACCCTGCGATAAAGCATTGAACTCTTTCTCTCTTAGCTCCTTCACCCATTTCATCACTCACTGTTCACTCAAGATTGAAGGAGTTTTCCTCTGCACCGCTGTAGTCACTTTCTCTGTTACCTCTGCAGTTCATGTTTTCTTCTGCTACCAAGTATGGCAATGTTTCATATGCAACCCACGGTTCATAATGCTTCCCCTTTTGTCTCTTTTATTTATCCTTCTTGGTTTCTTTCAACTGAAAGTGAAAGCTTTCTCTCTTTTTTTTTTCTCCAATTTTTTTTTTCTGGAACTGGGTAATAGCAGGACTTTAATGGCAGCACTGTTTTTCATTATTCTCAAATCTCAAATGGGTTTTCTCCTAGATGTTGATATGTTTATGGGGTTATTTACTTCATTTCAGGGTTGGTGAAAGCTTATAAAGGTTTTTCCCTTGAAGCGGTGCAAGCAAGCAGCAGCTGAGGGGATACTAGATTCCAAATCCTCACGTTCAAGAAAAGGGAAAATTCATCGTGAAGGAAAGGTGGACTTTTATGGTGAAAAGAACAAGAGACAAGAGTTGTTAATGCTGTGGTACAGTGTTTGGTAGAGTTTTGATAACGATTTTGCCTCTTGGAGAAAAGCACTGTTGAGTGGAGTGGGAGCACTTACACTTCACTTCAGCAGAGAACGGTGTACAGTGATGGAAGCTCTATGCTTGTTACACATTCTGCTAGCTTGGTGCATGTCATGTTTTGAGCTTGTTGGTGCTGAGCTTCAGGAGCAAGCTATATTACAGGCCATCAACCAAGAGCTTAGGGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCACTTGGCAGGGTGTCAACTGTGGTAACCACTCAATGGTGGAGAGCTTGGATCTGTCTCATCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATTCATTCCTCCTGCTTTTGGAAATTTATCTGATCTTGAAGTTTTGGATTTGTCTTCAAATAAGATCCAAGGTTCAATTCCACCTCAGTTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGAGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAATCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAATTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTCAATTTCTGAGCTTCAAATACTTAACTTGCACTCTAACCAGCTTGAAGGTCCAATACCAGCTAGCATTTTTGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGCGAACTTCCTGAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGAAACAACCATCTAGTAGGTACCATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATAATCTTTCTGGTGAGGTGGTGGCAGAATTTTCTCAGTGTTCTAATCTTACTCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCACAAGACTTTGGACAACTTATGAATCTTCAGGAATTAATTCTTTCTGGAAATAGCCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTCATAAGAGGAGAGATCCCCCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATCAGGAACTTACAAATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGAATATCGGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGCAGGCCTGGTACCAACATTTGTACCATTCCAGAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGACTTTGTGGAGAGCCTATAAATCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCATCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGAGATTGTTGATGAGAGCATCAACGACAACCCAACTATAATTGCAGGGACTGTTTTTGTTGATAATCTCAAGCAAGCAGTAGACCTTGATGCTGTTGTTAAAGCAACTCTGAAAGACTCTAATAAGCTCAGCAGCGGGACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTTTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACTATTATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTCGTGCGTCCCATTGGCTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAACGGAACACTGGCTCAACTTCTCCATGAATCTACCCGGAAAGCTGAATATCAACCTGACTGGCCCTCTAGATTGTCCATTGCCATTGGCGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATCATCCATCTTGATATTTCTTCTGGCAATGTTCTCTTGGATGCAAATTTCAAACCATTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTCGGTTACATACCTCCAGGTATGCTACTTTCTGACATGCAATTCTCCCATCTATTCACCCTATTAACTTTTACAGTATATAGTCTTTGCATTATCATCTCTTTACACATAGTTAATTATTTTGACAATATTACATTAAAATTCATGTGAATGTAATGATGATTTATAATTGGTTTGTGAGGTTAATTAAATTACATACAAATTAAATTCTACTACTTTTGTTGTGTTTAGCATGCTTCATGTTACATTTCATCTGCAATGCAGAATATGCATATACCATGCAAGTGACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACCAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGAGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCCTTTAGCTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCATTGCTGTGCACCGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTACGGGAAATAAAGCAAAACTGAGAACAGCAAGCTACTCAAGTATTCTATTCTGTGCTGTAGTCTATGTCGTTGAAGATTTGATGTATGCAAAATCTCATGGATACAGAGGAACTGATGAGTAATACAACAACATTAAATAGTAGACTTGTATGAGGAGTTACTTCAGATGGTGAAGGTGGTGTGAAAGTAAATTCAGGCATTGATAGAACTTCACCTTTCTAGGTTGTCCAAAGGGTTAGTTGTAAAATGGCAGCTAGCTTATCTATTTGAGTTGGACAGTATGGTTAGGTTGAGGGAGGATAAATGCAAGGACTTTGAAACAAGATATATCAGTTCCTCTTGCATATAATCTAATCACAGTTTTCATATTGTATTTAC