Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20409 LG5 22614436 22617087 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 22614453 synonymous_variant p.Leu6Leu
C/A 22614488 missense_variant p.Ala18Asp
A/T 22614715 stop_gained p.Lys94*
T/G 22614891 synonymous_variant p.Val152Val
A/G 22614893 missense_variant p.His153Arg
C/T 22614912 synonymous_variant p.His159His
A/G 22614937 missense_variant p.Ile168Val
A/G 22614945 synonymous_variant p.Arg170Arg
A/T,* 22614966 synonymous_variant p.Ile177Ile
T/C 22614968 missense_variant p.Ile178Thr
A/G 22614972 synonymous_variant p.Glu179Glu
G/T 22615119 splice_region_variant&intron_variant
T/A 22615128 intron_variant
T/A 22615314 intron_variant
A/G 22615665 intron_variant
A/G 22615796 intron_variant
C/A 22615801 intron_variant
T/C 22616170 synonymous_variant p.Ala307Ala
G/A 22616172 missense_variant p.Cys308Tyr
T/C 22616345 missense_variant p.Trp366Arg
G/A 22616347 stop_gained p.Trp366*
A/T 22616349 missense_variant p.Lys367Met
T/A 22616384 missense_variant p.Ser379Thr
G/T 22616387 missense_variant p.Val380Phe
C/T 22616439 missense_variant p.Pro397Leu
G/T 22616505 missense_variant p.Gly419Val
G/A 22617008 missense_variant p.Val587Ile
T/A 22617020 missense_variant p.Tyr591Asn
T/A 22617029 missense_variant p.Tyr594Asn
G/A 22617049 synonymous_variant p.Arg600Arg
A/G 22617087 splice_region_variant&synonymous_variant p.???613???

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20409.1
MAESFLFSIAESLIEKLASHAFQEASRLVGLYHDLRDLTKTLSLVKAVLLDAQQKQDHNHQLREWLTQLKIVFSEAEDVLDEFECQTLRNKVVKAHDSTKDKVSHFLSTSNPLVFRCKMARQIKHINNRLDKVAADRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPNDDDTILSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPWKIIHDLVHDLALFVATDECLHVRFNIQNIPENVRHLSFAGNSLFDNLVIKKSAAVRTVLFPNGAVGANGEAILNTCLSKFKCLRVLDLRGLTLETLPRTIAKMKHLRYLDISKNLNIKRLPDSICKLQSLQVLIIRGCVELEVLPKGLRKLISLRYLFFSTKQIVLPVNEIAKLGSLEYLSIEWCHNVESIFGGVKFPSLKTLCVGDCQSLKSLSLDGQIFGGVKFPSLKTLCVGDCQSLKSLSLDGQNFPELETLLVKNCGNLDLGQSKGHHKEESPKLKLKLVLFFGLSQMVALPKWLQEASKSLQRLYVLNCDNIERLPYWLTTLTDLKALDLINCPNLVSLPDNIHHLTALESLRIRGCPNLHKIYEPMLEGFGPKYHTSKTL*


CDS Sequence:
>Vu_20409.1
ATGGCTGAATCATTTCTGTTCAGCATAGCAGAGTCACTCATAGAAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGATTGGTGGGTTTATACCACGATCTACGAGACCTTACAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCACCAACTCCGCGAATGGCTCACTCAACTTAAAATTGTCTTCTCCGAAGCTGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAACAAAGTGGTCAAAGCTCATGATAGCACCAAAGACAAGGTAAGTCACTTCCTCTCAACCTCTAATCCACTTGTTTTTCGTTGCAAGATGGCACGACAAATTAAACATATCAACAACAGACTAGACAAGGTTGCAGCGGATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGAAAACACGATAAAGAAAAGATAATAGAACTTTTGATGCAGCAGAATCCTAATGATGATGATACAATTCTATCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATGGAAGATAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCGACGGATGAGTGTCTACACGTGCGTTTCAACATTCAAAATATTCCAGAAAATGTTCGGCATCTGTCTTTTGCTGGAAACAGTTTGTTTGACAATTTAGTCATAAAAAAATCAGCAGCTGTGAGAACCGTACTGTTTCCAAATGGTGCAGTAGGTGCCAACGGAGAAGCTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACGTGGTTTGACATTAGAGACTTTGCCCCGTACCATTGCTAAGATGAAGCATTTGAGATATTTGGACATTAGCAAAAATCTCAACATTAAGAGACTCCCCGATTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGATAATTAGGGGATGCGTAGAGCTGGAAGTATTGCCCAAAGGATTAAGAAAATTAATCAGTCTCCGTTATTTGTTTTTTAGCACAAAGCAAATTGTTTTGCCTGTGAATGAGATCGCCAAATTGGGGTCGCTTGAATACTTGAGCATTGAATGGTGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAAAGTCTAAAATCATTGTCTCTGGATGGTCAAATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAAAGTCTAAAATCATTGTCTCTGGATGGTCAAAACTTTCCTGAATTAGAAACATTGCTTGTTAAGAACTGCGGTAACTTGGACTTGGGACAGAGTAAGGGCCACCATAAAGAAGAAAGCCCGAAGCTGAAGCTAAAACTTGTATTATTTTTCGGTTTATCACAGATGGTGGCCCTGCCTAAATGGCTTCAGGAAGCTAGCAAATCCTTGCAGCGCTTGTATGTTTTAAATTGTGACAATATTGAAAGACTTCCATATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGATTTAATAAATTGTCCAAATCTGGTATCTCTGCCAGATAACATTCATCACCTCACTGCACTTGAAAGTTTGAGAATTAGAGGTTGTCCTAACTTACATAAAATATATGAACCAATGTTGGAGGGTTTTGGCCCAAAATATCACACATCAAAGACATTGTGA


Promoter Sequence:
>Vu_20409::LG5:22612436-22614436(+)
ACATCGGTCTTATAAAATCATTCCACGTGATTATAACCTGCACATAAGTAATTAAAGAAGGCTAAACATTCTAATCCAATTTATCTTGGTCTGATCTAAAAACAGTTCATATTTATAAAAGAAAAGATGAAGTGAATCTCTTTCCATAAGAAACAATTCCTCAAATCTATGCAAGTCTGGAGAGTTGTAAATTCCTGTGCAGCACGATAATTTTTGTGGCACAAAACTCAAGTCTTTTTGTTTGCAGCATACTTTCTGAGAGTATCTTAGCTTTTGACACAACTTGGAAAATTCATCATTATGTGTGCTCAGATTACAAAAATAAAGGGTTAAAGAAAATAGTCTAAGCATGCACCTTGGATTAACTGACATGAACATTTTATCATAAAGCAAAACTAGAGCAAGTTTTATCACTTCTTTTGTTTTGTTCTTTGTCTGTGAAACTAATCAATCTCTTTTTAACAGAACAGAGTCATTAATGAATTTTTATTGTAGCATGTAGAGAAAAAATTATTTTCATCATTGCTTTTTATCTTAATTTTCTTATCATGTGTCTATTTTTCATCATTAATCTATTTATAGAAGAAAAAAAGTCATCATATTTTTCTTATTTTTGTAAGTATAAAAGTTGCTGAATGTAGGATCTGCATAGATGAGCTGACTGACAAAAACAGTAGATGCTTGATCCTCTCTCAGTGCTACTTACTAGGATGGCAAAGAAGTTTATTCAAATAATCTTGCAAACTTTCAATGACGTTTAACTCAAATTTAAAATAAAATTTCTACTCACGGTCAACAATAACTGGACAAGCAGTGTTCACAACATACATTTTATAGATACTTCAGAATTATAGATAGTAATCATTCAATCCAACTCACTATCAAAATCAGAAATCACATTCCGTTCGAACATATTCTACATCTTCATACTAACATATTACAACTTCAACATTTAAAAGCTAAGCTAAAAAAATATATATATACTTACCTTCAATGGAGGGTCTAATTCAAAAGGGGTTTTGATTGGTGGAGATTGTTCCAAGAAGTTGGGGTTTTTTACAGTGATTGCTTGATTGTAGAAGGCAACGATTGGTCATGCTTGTTCAAGATGTTGGGATCATGGGGGAGTGTTCTTTGCATTTGAGCTTGGGATTTTAGAGATTGAAGTAGGTTTGTGCTTGTAAGAGAATGATCAGGGAAGAAAGTTCGTGAGAGATGTGAAGGAAATGATGCCAGAAGAAGGAGTTGTGAGAGTGCACGAAAACTATTGTTTGGGGTGAAGGGGTTGACCCGGCCCTAACCCAATATCAATCTCTTTCATAGGGCTGTTGGGGCCGGGGGCTGTGAAAAAGCCCCCTGAAATGTGGGCCAAGAAAATGGGGCTTATTTTAAAGAAGGGTCAGGACTGGCCTTGGGGTTTCAAATTAAAATGACAGCTCTAGTCACCGCTAATGTAATCCAAAGAAAAATGTATAATATTGTAGTGGAAAGGGGAGAGAGAACATGTTTATTCGGCCAGATTAGTTGGTGTTGCAGTTTGTAAAGAAAAGTTTAGATAACATCCTGTGACTAATGGCAGCTAGTCCTACAAAATATTCTGTTCATCTTGTGACTTTTTCCACTGTAGAATTATATGGCCCAAAATATTGTTTAATCGCAATTGGGATATGAATTCTCAAAATTAATATTGTCTAAAGCTATAATTTTTCTATTTTTGTTTCGTTTTGAGTTGGATTAGAAAATACGTTCTGGATATAAATTTTTGTATTTTTTTAAAAGAAAAAATAAAAAAAATAAGAAAATAAGAAAATAAGAAAATAAGAAAATGTAATATTGAATGTAAAAATTCTGTGTGTGAAAGCAATATTTTTCATAAATTCATGGAAAAAGCAAGTGGCATTAATTATTGGCTAGTTGTAATCCATTCATCAGCAAAGATGACTTATAAACACGGTCTTCCCTTCCCATCTCATCTCTGCCATTCGTATTTCAAACAACTA


Gene Sequence:
>Vu_20409(+)
ATGGCTGAATCATTTCTGTTCAGCATAGCAGAGTCACTCATAGAAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGATTGGTGGGTTTATACCACGATCTACGAGACCTTACAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCACCAACTCCGCGAATGGCTCACTCAACTTAAAATTGTCTTCTCCGAAGCTGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAACAAAGTGGTCAAAGCTCATGATAGCACCAAAGACAAGGTAAGTCACTTCCTCTCAACCTCTAATCCACTTGTTTTTCGTTGCAAGATGGCACGACAAATTAAACATATCAACAACAGACTAGACAAGGTTGCAGCGGATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGAAAACACGATAAAGAAAAGATAATAGAACTTTTGATGCAGCAGAATCCTAATGATGATGATACAATTCTATCTGTTATCCCAATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATGGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAGGCAACTAGTTATCAAAATCATCAATTCTGCCAATGATGTAGATGTTCCTCCTCACCAACAGAATTTGAACAAGATGGATCTGGAGCAACTGCAAAACCAATTGAAAAGAAAACTTTCCGGTAAAAAATTTCTTCTTGTTTTGGATGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGTGGAGCAGGAAGTAAAGTTGTAGTGACCACACGTAGTCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACATTTTAGAAGGTCTTTCCAAAGAAGAGTCATTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCCAAATTTGAGGACAGTGAATGGGAATATGTGAGTGACAGTGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCAATAGTTATAAAATGACTGCGCTTTGGGAGGCACATGGGCTCATTACACTACCAAAAACGAATAAAACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGTAAACTTTGGCACTTCTTACAATTTTAGAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCGACGGATGAGTGTCTACACGTGCGTTTCAACATTCAAAATATTCCAGAAAATGTTCGGCATCTGTCTTTTGCTGGAAACAGTTTGTTTGACAATTTAGTCATAAAAAAATCAGCAGCTGTGAGAACCGTACTGTTTCCAAATGGTGCAGTAGGTGCCAACGGAGAAGCTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGATTTACGTGGTTTGACATTAGAGACTTTGCCCCGTACCATTGCTAAGATGAAGCATTTGAGATATTTGGACATTAGCAAAAATCTCAACATTAAGAGACTCCCCGATTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGATAATTAGGGGATGCGTAGAGCTGGAAGTATTGCCCAAAGGATTAAGAAAATTAATCAGTCTCCGTTATTTGTTTTTTAGCACAAAGCAAATTGTTTTGCCTGTGAATGAGATCGCCAAATTGGGGTCGCTTGAATACTTGAGCATTGAATGGTGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAAAGTCTAAAATCATTGTCTCTGGATGGTCAAATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAAAGTCTAAAATCATTGTCTCTGGATGGTCAAAACTTTCCTGAATTAGAAACATTGCTTGTTAAGAACTGCGGTAACTTGGACTTGGGACAGAGTAAGGGCCACCATAAAGAAGAAAGCCCGAAGCTGAAGCTAAAACTTGTATTATTTTTCGGTTTATCACAGATGGTGGCCCTGCCTAAATGGCTTCAGGAAGCTAGCAAATCCTTGCAGCGCTTGTATGTTTTAAATTGTGACAATATTGAAAGACTTCCATATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGATTTAATAAATTGTCCAAATCTGGTATCTCTGCCAGATAACATTCATCACCTCACTGCACTTGAAAGTTTGAGAATTAGAGGTTGTCCTAACTTACATAAAATATATGAACCAATGTTGGAGGGTTTTGGCCCAAAATATCACACATCAAAGACATTGTGA