Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20393	LG5	22436500	22439814	PREDICTED: AP2-like ethylene-responsive transcription factor At2g41710 isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway	B 09182 Protein families: genetic information processing	C 03000 Transcription factors [BR:ko03000]

SNP	Position	Effect	Amino acid change
C/T	22436697	intron_variant
C/T	22436739	intron_variant
A/C	22436799	intron_variant
A/T	22436800	intron_variant
C/A	22436847	intron_variant
G/A	22436900	intron_variant
G/T	22436905	intron_variant
G/A	22437044	intron_variant
G/C	22437066	intron_variant
C/G	22437215	intron_variant
C/T	22437276	intron_variant
T/C	22437621	missense_variant	p.Ile285Val
T/A	22437670	stop_lost	p.Ter268Cysext*?
A/G	22437940	intron_variant
A/T	22437970	intron_variant
A/T	22438007	intron_variant
G/A	22438287	intron_variant
G/C	22438290	intron_variant
T/C	22438342	intron_variant
G/C	22438377	intron_variant
A/T	22438462	intron_variant
T/C	22438492	intron_variant
A/C	22438763	intron_variant
A/G	22438825	splice_region_variant&intron_variant
C/T	22438920	splice_acceptor_variant&intron_variant
A/G	22438929	intron_variant
C/A	22438959	intron_variant
A/G	22439037	intron_variant
G/A	22439064	intron_variant
T/A	22439127	intron_variant
A/G	22439130	intron_variant
C/T	22439172	intron_variant
C/G	22439233	intron_variant
G/A	22439292	intron_variant
A/T	22439304	intron_variant
G/T	22439385	intron_variant
C/T	22439402	splice_region_variant&intron_variant
G/A	22439469	missense_variant	p.Thr72Met
A/C	22439510	intron_variant
G/C	22439516	intron_variant
T/C	22439517	intron_variant
G/A	22439520	intron_variant
A/T	22439525	intron_variant
A/G	22439574	intron_variant
A/T	22439575	intron_variant
A/T	22439576	intron_variant
C/T	22439581	intron_variant
C/A,*	22439718	missense_variant	p.Ala33Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20393.1

MASSSSDPGKSAETSEAAVPTDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSRWESSYGRISGSDYFNSMHYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALRILSQSAAYKSLQEKASKRQENSIDNDENENKNTVNKLDHGKAVEKPSNHDGGSDRLDIAMGMSGTMPLQRNIYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVLPAGLSRTDEVTKTETSSTYTMFQPEE*

CDS Sequence:
>Vu_20393.1

Promoter Sequence:
>Vu_20393::LG5:22439814-22441814(-)

CCGTCTCAAAACCAATTTTAAATAAAAAGATTAAATATGGTTTTTGCTCTTTCACTTGGTGAAAATTGGAAATTATTTTTCTTTAAAAAAATTAGTTTTCAACTTTAAAATGGTGTGAATTTAATTCTTTAACTAAATTTTTAAAATTTAAAATTTTATTAATTTTATAAATACATAAATTACAAAACATTTAAAACGTTAAATAAATTTAACAAAATTTAATTAAAAATTTTCAATTAACATTTTCTAAAAATAAAAACAAACTCAATTAAAAAAATTTTAAAAATCAATTTTATAAGACTTAAAATATATTTAATTCTAAATAAAATTAAAATACTCCGTTATTATTTTTTATAGTTATTTTTTTTACATTTTTTATGAGATTTTCGGCTTCTTTCAACCTATGCACTCTGAATTTATTTTAATCTTGGATTCGTTTGTCTCTAAATTTATTGGGAGCGTGCTCTATTTTGTTCTTTCTTTTTGTAATTTTCAAACATGTTACTTCTTACCTATCAAAGTATTATTATTATCTTTTTCTTTTTCATAAGGAAGCTTCCTAAGAGATTTTCCATTTTTTGGAAATTGAGATATTCCAATTTTTGAAAAGAGAATTTCCAAAGATTTTGAATTGTATTTATAGTTTTACATGCTTTATTTAAAATAGAAAATATTTTTCTTATTCGTTTATCTCAAACAAATTTTCAGTTAGCCCCCGTTGAAATTGAAATCTTAAACATTTAAACACCCACATTTGATTGATGTGACTTGATGCATTTGTTTGACATTTCAATTTAACTTAATTTGATTACACAATAGAGAATAAAGATAAAAAAACTTGTTGCGAACACTAACAAATTGTTAAAGTAGATTGAGTGAAAATCTAGCAACAAAAAGTTACTACTAAACAAATATGTAAAGAGGTGGTTTGAATTAGGTGAGAAAATAAAAAGAATGAAAAAAAAAAAGTGGTTTGAATTAGGTGGAAAAAATAGAATTAACTATATTTTTTTCTATTAATAGTTTAATTTAATTTATTATTTTAGTATTAATTTTTAATTAATTAATTATTCGTTTAATATTATTATTATTATTACAAAATAGAAATATTAATAAACTATTTAGGACATGATTATGTAACATAAATATTTTACTATATTTATTATATACTTAGCTACGATAATTTTCACATTTTTTCTGTGTTTATATACGAAAAGACTTTATTCTTATCTTCATAAATTGTACTTTTTACATCTTTGATAAAAAAAAATAATTAATTTTACATTCTTCCCCATCTATAGTTTGAAACAAATTATACAGAAATATAGCCAAACTAGAAAATTTTAAATATCCAAATAAGATAATTGTTTGATGATCATTTGATTAAAAATAATTATTATGAAATTGTCATATAATTACGCACTATTACAAACATGAATTTAGGGCATGATAGATAGGTTTAAAGGAATTAACTATAATTATTTTTTCTTACAAACAGATTTCATGAGATTAATTTATTTATGCGACTAAATACTTACTTTAATAACAATAAAACCTACCACAAAAGAATTGGTCTAATTTCATTTTCTATTTTTTATTAAAGATAAAAAATAATTAAAAAAATTATTGGTGGAAAGTAAGTAAGTAAGATGGTGAGTTTAGAAAATAGAATGAGGAGCAGACAACAAGTGGCACCTAACATGCACAATGGTCATACTAATCAAAATCGGCATGAAATGACAGGAGTACCCTCAGGGGGTCCTAGCCGTTACATCGCCTCACAGTACCACTTTACACATTGGTCATTTCAAAACCTGGAAAGGGCATTTCAGTAACTAACTCCACTCATCACTCATTCCTCCTTCTTCCTTTGTAGTTTTCCCCCTCACTCACTCCCACTTCCATTTCACTTCATTTCCATTCCCAAATTCCAATCGCTATCACTCAAACGAACGTACGAACTTCTCTCTCTCAGTTTAGGGTTAGGGTTTTCTCCAATC

Gene Sequence:

>Vu_20393(-)

ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCTGCGGAGACGTCGGAAGCGGCGGTGCCAACTGATCAGCTCTTGCTCTACCGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACCGCCAAAGAGCGAATCAGCAAAATGCCTCCCTGCGCAGCTGGAAAACGTAGCTCTATATACCGCGGCGTCACCAGGTAGTTACTTAGTAAGGTTCGGTTTGGAGGAAATGAATGGAGTTTTTTCTTGGAAGTTAAGCCGATCGACTAATGAAATGAATATATATCTTGATTGTTGCTGACGGAATTTTGTGGATTGATTGACTAGGCATAGGTGGACTGGTCGTTACGAAGCTCATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGGTTTGGTTTGGTTTGGTTTGTTCTTCGTTTCGGGTTTGGACTTGTGTCAGACTGAAATAGCTTACCTGTTTTTGTTTCCCCTGTTGTTTCGGAATTGGTTCGTTGGACAATGGTTCGTTCGTGGTGGGGCCAGTTTACTTGGGTGAGTTTGCAATGCGGTGCTCAGTTCAGTTCGCATTTATTAGATCATGTTTGGATAAACTTCGAAATAAAGAAACGTGTAGGAGAAGAAATGGCAAAATGGATTAAACTTATTCTGTATGTTGAAATCAACTTATGCACACCTCTTGGGGAAATTAGATGAAAGAGCTTGTGTGTGGGATGAGTTTAATTTAGTAACTTTCTTATCTTGCTCTCTTCTCTAAATGTATAAGTAGAAGTTTATCCAAATATGGTCTTATTCTTTTGCTTATCATCATTATTGAAATTTCTCGCTCTACACCCTTTTGTAAGGTAATGATGTTAGTTGCTGATGGATTTTGGATAGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTAAGATAATGAAAATTGTGTCCTATTAATAATGTATGATAACTATGGACTATTAGTACAATATCTACTATGCCTTCTTTGCCCAAGTTATTACGTAGCATAAGATTGAACTGTTTTGTTGGTGAGTAAGTTTTGACCGTGGAGACTATAGATCCGGTGCCCTTTGATTGGAAAAGGATGTTTGTTATTCTCTCTGGTGAATGTAGTTTTTTGTATCACTTATGATGTGTGTGCTGCAGGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGTGTGTGTATACTTAAAAAATGTTTTATATCATGTATCCGTGCTGCTTCTTACACGTGATGCTTTCTGCAGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGGTGTGTTAATCTATCAACTCTCTTTTACTGAAGCTGTCTGGAAATTAACTTCTTATCTATATCCACATCTCCTTGGGTTTGGCTAGCTATATATGTGGAGCTAGTTCTTCTCTGCTTTGCTCACAGCTACAGATTTTTATGATCTGGTATAGCTGTCATCCATCCAGTGTATAAAATCTGATGTGGATTTGACCGCTAACTTAAACGTTCATCTTGCATGTGGTGCTAACAAAATTAGTCGGTGGGAGTCGTCATATGGCCGCATATCTGGATCTGATTACTTCAATAGCATGCATTATGGTATGTTATAATCAAATTTAAAGTTCAGTTAATCTTCTAGCGAACAGAGTTATATGAACCATGTTCATTTCTGCTCCACATGTGGCTATTGGAAAAATAATAATATTTTCAACTTATGTTCACCTGTTTTTCTGGTTGGTAATATCATCTCACTGGTTTACAACGTTAAAGGTGCAGGGGATGATTCAGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACAAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCATCGGAAGAAAAAAAGCTTGGTTCTGCTGGAGATATTTGCAGTGAGCTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGAAGGCCACACAATGAGAAAAAGCAAAGAAGTTCTTCAGTCTCTGCCTTAAGGATTCTTTCTCAATCTGCTGCTTACAAGAGCTTGCAGGAGAAAGCGTCAAAGAGACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAGTTGAGAAACCATCAAATCATGATGGAGGCAGTGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATATCTACCCTTTGACGCCATTCTTGTCAGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCCGTACTTCCTGCCGGCCTTTCTCGTACAGATGAGGTTGGTGTAATGACCAAGTGTTTTACTTTATTGAAATTACATGAGAAGTTATTTAACAGAGCTAAAATAGTAGAGAGCGTAATTTTATAATAGATTGTCAACTGATATTCAAAACAAATAATTCATCAAATTCCGAAGAAAACAGTATTTAAAACAAAAATAATCTGCCCGAGTTTGTGTGAGCGTAGCAATTAAAATTTGTTCTCAGTAAAATATGATTTCAATTATCATCTATAACAATCTCTTTTATGTCTGGTATTAAGTGTTTAAGACGAACTGATTTCCTATGCTATTAAGCCAGAAAGGTGGTATCAACAAATTTAATTTGTTATCTCTTGAATATGATGATTGTAAAGCTGAACATTATTACGAGTGCTTCTCTCACTTCTTCTGAGCCTTAACACCAAAAGGTCCCTTTCTCTTCGTGTTGACACAATGTGGAGGCAAAAGGTCCCTATGGATGAAATTTGAATTACAGAGGCCGAAGTTGTAATTTTATATACATGGCAATTATTTCTAGCCTTCTATTACTTCCTGGAGATTTGATTGCCCAGAATTCCCTAATTATCATTTAACACTTTAAAGAGGAAGCAGTTTCCTGATTAGTGAGGGGACAGTTGTTCAATTCGAAATCGTCAGTTACACGAAACAATTGATTGTATATGGTAAGATAAGAATTGCTTGTAACATTCTTGTAAACTCACGTTACCAAGAACACTTGGTTTGATGTGCAGGTTACCAAGACAGAGACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA