Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20377 LG5 22120784 22123387 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 22120789 synonymous_variant p.Ala2Ala
A/C 22120799 missense_variant p.Ile6Leu
T/C 22120809 missense_variant p.Ile9Thr
T/A,C 22120810 synonymous_variant p.Ile9Ile
A/G 22120844 missense_variant p.Thr21Ala
C/T 22120862 stop_gained p.Arg27*
A/G 22120901 missense_variant p.Asn40Asp
C/G 22120940 missense_variant p.Gln53Glu
C/T 22121038 synonymous_variant p.Cys85Cys
C/T,G 22121047 synonymous_variant p.Leu88Leu
A/G 22121082 missense_variant p.Lys100Arg
C/T 22121101 synonymous_variant p.Phe106Phe
G/C 22121109 missense_variant p.Ser109Thr
T/C 22121110 synonymous_variant p.Ser109Ser
C/T 22121171 synonymous_variant p.Leu130Leu
A/G,* 22121255 missense_variant p.Thr158Ala
T/A 22121266 synonymous_variant p.Arg161Arg
G/C 22121271 missense_variant p.Ser163Thr
A/T 22121280 missense_variant p.Asp166Val
T/C 22121324 synonymous_variant p.Leu181Leu
C/T 22121443 synonymous_variant p.Ile220Ile
T/C 22121460 missense_variant p.Leu226Ser
T/C 22121533 synonymous_variant p.Asn250Asn
T/G 22121543 missense_variant p.Ser254Ala
A/T,* 22121558 missense_variant p.Ile259Phe
A/G 22121567 missense_variant p.Met262Val
C/G 22121611 downstream_gene_variant
T/C 22121648 downstream_gene_variant
T/A 22121684 downstream_gene_variant
G/A 22121696 downstream_gene_variant
T/C 22121698 downstream_gene_variant
C/T 22121786 downstream_gene_variant
T/A 22121821 downstream_gene_variant
G/C 22122122 downstream_gene_variant
A/C 22122128 downstream_gene_variant
T/A 22122129 downstream_gene_variant
A/G 22122142 downstream_gene_variant
G/T 22122147 downstream_gene_variant
G/T 22122148 downstream_gene_variant
A/G 22122208 downstream_gene_variant
G/A 22122223 downstream_gene_variant
G/A 22122227 downstream_gene_variant
A/G 22122229 downstream_gene_variant
T/C 22122232 downstream_gene_variant
C/T 22122233 downstream_gene_variant
T/A 22122234 downstream_gene_variant
T/C 22122276 downstream_gene_variant
A/T 22122283 splice_region_variant&intron_variant
T/C 22122299 synonymous_variant p.Ile269Ile
A/C 22122343 missense_variant p.Tyr284Ser
C/T 22122344 synonymous_variant p.Tyr284Tyr
A/G 22122345 missense_variant p.Ile285Val
A/G 22122440 synonymous_variant p.Gln316Gln
C/G 22122457 missense_variant p.Ser322Cys
C/T 22122464 synonymous_variant p.Phe324Phe
C/A 22122483 missense_variant p.Pro331Thr
A/G 22122485 synonymous_variant p.Pro331Pro
C/T 22122529 missense_variant p.Ala346Val
T/C 22122531 missense_variant p.Cys347Arg
G/T,A 22122532 missense_variant p.Cys347Tyr
G/A 22122547 stop_retained_variant p.Ter352Ter
G/C 22122551 synonymous_variant p.Val353Val
A/C 22122580 missense_variant p.Lys363Thr
A/G,T 22122584 missense_variant p.Leu364Phe
G/C,A 22122585 missense_variant p.Ala365Thr
G/C 22122592 stop_lost p.Ter367Serext*?
G/T 22122610 missense_variant p.Trp373Leu
A/G 22122620 synonymous_variant p.Ala376Ala
A/G 22122621 missense_variant p.Lys377Glu
T/C 22122628 missense_variant p.Leu379Pro
C/T 22122643 missense_variant p.Ser384Phe
C/G 22122646 missense_variant p.Pro385Arg
G/A 22122647 synonymous_variant p.Pro385Pro
T/C 22122655 missense_variant p.Phe388Ser
T/A 22122668 missense_variant p.Asn392Lys
G/C 22122674 missense_variant p.Trp394Cys
T/C 22122678 missense_variant p.Cys396Arg
A/G,T 22122684 missense_variant p.Thr398Ala
C/G 22122685 missense_variant p.Thr398Ser
G/A 22122690 missense_variant p.Glu400Lys
A/C 22122691 missense_variant p.Glu400Ala
G/A 22122698 synonymous_variant p.Ala402Ala
T/C 22122699 missense_variant p.Trp403Arg
T/C 22122704 synonymous_variant p.Ser404Ser
T/G 22122736 stop_gained p.Leu415*
T/C 22122745 missense_variant p.Phe418Ser
A/T 22122747 missense_variant p.Ile419Phe
T/C 22122765 stop_lost p.Ter425Glnext*?
T/A 22122785 synonymous_variant p.Leu431Leu
C/T 22122796 missense_variant p.Ser435Leu
A/G 22122801 missense_variant p.Thr437Ala
G/A 22122815 synonymous_variant p.Leu441Leu
G/A,* 22122854 synonymous_variant p.Pro454Pro
T/C 22122859 missense_variant p.Leu456Ser
C/T 22122875 synonymous_variant p.Phe461Phe
C/G 22122879 missense_variant p.Leu463Val
T/A 22122889 missense_variant p.Leu466His
A/T 22122893 stop_lost p.Ter467Cysext*?
T/A 22122894 stop_lost p.Ter468Lysext*?
A/C 22122895 stop_lost p.Ter468Serext*?
C/T 22122899 synonymous_variant p.Phe469Phe
A/T 22122901 missense_variant p.Lys470Met
G/T 22122902 missense_variant p.Lys470Asn
T/C 22122913 missense_variant p.Val474Ala
T/C 22122921 missense_variant p.Phe477Leu
T/G,A 22122935 missense_variant p.Ser481Arg
G/T 22122936 missense_variant p.Val482Leu
C/T 22122947 synonymous_variant p.Phe485Phe
A/G 22122955 stop_lost p.Ter488Trpext*?
A/T,* 22122966 missense_variant p.Met492Leu
G/C 22122971 missense_variant p.Leu493Phe
T/A 22122972 stop_lost p.Ter494Lysext*?
A/G 22122975 missense_variant p.Ser495Gly
G/C 22122976 missense_variant p.Ser495Thr
G/A 22122981 missense_variant p.Val497Ile
G/T 22123000 missense_variant p.Cys503Phe
G/A 22123036 stop_retained_variant p.Ter515Ter
T/G,C 22123047 missense_variant p.Leu519Val
A/C,G 22123052 missense_variant p.Leu520Phe
T/A,C 22123053 missense_variant p.Tyr521Asn
C/G 22123070 missense_variant p.His526Gln
A/G 22123075 stop_lost p.Ter528Trpext*?
G/C 22123097 missense_variant p.Leu535Phe
G/A 22123099 missense_variant p.Arg536Lys
T/C 22123104 synonymous_variant p.Leu538Leu
T/C 22123107 missense_variant p.Ser539Pro
T/C 22123128 synonymous_variant p.Leu546Leu
T/G 22123129 missense_variant p.Leu546Trp
G/A,T 22123133 missense_variant p.Leu547Phe
T/C 22123134 missense_variant p.Trp548Arg
G/A 22123135 stop_gained p.Trp548*
T/A 22123147 missense_variant p.Ile552Asn
G/C 22123163 missense_variant p.Gln557His
A/T 22123187 synonymous_variant p.Ile565Ile
G/A,C 22123199 missense_variant p.Leu569Phe
C/A 22123200 missense_variant p.Leu570Ile
T/A 22123201 missense_variant p.Leu570Gln
A/C 22123206 missense_variant p.Lys572Gln
T/A 22123225 stop_gained p.Leu578*
G/T 22123228 missense_variant p.Arg579Leu
C/T 22123233 missense_variant p.Arg581Trp
G/A 22123235 synonymous_variant p.Arg581Arg
T/C 22123243 missense_variant p.Phe584Ser
C/G 22123254 missense_variant p.Pro588Ala
A/G 22123256 synonymous_variant p.Pro588Pro
C/T 22123258 missense_variant p.Pro589Leu
T/A 22123265 missense_variant p.Asn591Lys
A/G 22123271 stop_lost p.Ter593Trpext*?
C/T 22123298 synonymous_variant p.Tyr602Tyr
A/G,T 22123299 missense_variant p.Ile603Val
A/G 22123302 missense_variant p.Lys604Glu
G/A 22123315 missense_variant p.Arg608His
G/A 22123323 missense_variant p.Glu611Lys
A/T 22123326 missense_variant p.Ser612Cys
G/A,* 22123354 missense_variant p.Arg621Gln
G/T,* 22123363 stop_lost p.Ter624Leuext*?
A/T,* 22123364 stop_lost p.Ter624Cysext*?
G/T,* 22123368 stop_gained p.Gly626*
A/G,* 22123377 missense_variant p.Arg629Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20377.1
MAESFIFSIAESLIANLTSRTFQEASRLVGLYDDLQDLTNTLSLVKDVLLDAQQKQEHNHELRRWLSQLKTVFSDAEDVLDEFECQTLRKKVVKAHGSTKDKVSHFFSSSNPLVFRYKMAQQIKDINNRLDKVAANKRKFSLQMSDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPDDDDDTSLSVIPIVGIGGLGKTTLAKFVFNDKKIQECFPLKMWVCVSDDFDIKQLIIKIINSVNDSESDHAPIHQMNLNIIHDLVHDLALFVAMDECLHINSNIQNIPDNIRHLSFAERGLFSNLVTKKSTAVRTVLFPNEVAAANGKAILKTCLEKFKCLRVLDLSGATFETLPRKISKLKHLRYLDISKNPNIKRLPDSICKLQCLEVLNLGGCVELEALPKGLRKLISLYCFEFSIKQTVLPLNEIANLGSLELLTVGSCHNVESVFGGMKFPTLKTLIVQDCQSLKFLLLECKNFPQLETLYVVECSNLDLELWKGDHEEQSPKLKLKFVIFSTLSQLVTLPKWFEEVVNSLQCLIVVDCHNFESFPDWLPVLTDMKTLAIKNCPKLVALPDNIHLFTTLEYLTIVDCAADLHKKYEPHVGEFWPKISHISTILTWMNQKI*


CDS Sequence:
>Vu_20377.1
ATGGCCGAATCATTTATCTTCAGCATTGCAGAGTCACTCATAGCAAATCTTACTTCTCGTACTTTTCAAGAAGCTTCTCGATTGGTGGGTTTATACGACGATCTTCAAGACCTTACCAACACTCTCTCTTTAGTCAAGGACGTTTTGTTAGATGCTCAGCAAAAGCAGGAACACAACCATGAGCTCCGTCGATGGCTCTCTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTCCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTCAGTCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTACAAAATGGCTCAACAAATTAAAGATATCAACAACAGACTAGACAAGGTTGCAGCTAATAAGCGTAAGTTTAGTCTTCAAATGAGTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCTCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTGATGATGATGATGATACAAGTCTCTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACACTTGCAAAGTTTGTGTTCAATGATAAGAAGATCCAGGAGTGCTTTCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCCGTGAATGATTCAGAATCTGATCATGCTCCTATTCACCAAATGAATTTGAACATAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCTATGGATGAGTGTCTACATATCAATTCCAACATTCAAAATATTCCTGATAATATTCGGCATCTGTCTTTTGCCGAAAGGGGTTTGTTTAGCAATTTAGTCACCAAAAAATCAACAGCTGTGAGAACCGTCCTGTTTCCAAATGAGGTAGCAGCTGCCAACGGTAAAGCTATACTAAAGACTTGTCTGGAAAAGTTCAAATGCTTGCGTGTTTTGGATTTGAGTGGTGCAACATTTGAGACTTTGCCTCGTAAAATTAGCAAGTTGAAACATCTGAGATATCTGGACATTAGCAAAAATCCTAACATTAAGAGACTCCCCGACTCTATTTGCAAGCTCCAATGTTTGGAAGTGTTGAACCTTGGAGGATGCGTGGAGTTGGAAGCATTGCCCAAAGGATTAAGAAAACTTATCAGTCTTTATTGTTTTGAGTTTTCCATAAAGCAAACTGTTTTGCCTTTGAATGAAATCGCCAACTTGGGGTCGCTTGAATTATTGACTGTTGGATCATGCCATAATGTGGAATCCGTATTTGGAGGGATGAAATTTCCTACTCTTAAAACTTTGATAGTTCAAGACTGTCAGAGTCTTAAGTTTCTGCTGCTGGAGTGTAAAAATTTTCCTCAATTAGAAACATTGTATGTTGTAGAGTGCAGTAATTTGGATTTGGAACTGTGGAAGGGAGATCATGAAGAACAAAGCCCCAAGCTGAAGTTAAAATTTGTTATATTTTCAACTTTATCACAACTAGTGACCTTACCTAAATGGTTTGAGGAAGTTGTCAACTCCTTACAGTGTTTGATTGTTGTGGATTGCCACAATTTTGAATCATTTCCAGACTGGCTGCCAGTTCTGACTGATATGAAAACTCTTGCTATAAAAAATTGTCCAAAGTTGGTTGCGCTCCCGGATAACATTCATCTCTTCACCACCCTTGAATATTTGACGATTGTAGATTGTGCAGCTGACTTACATAAAAAGTATGAGCCGCATGTTGGAGAGTTTTGGCCCAAAATATCACACATATCGACAATATTGACATGGATGAACCAGAAGATTTAG


Promoter Sequence:
>Vu_20377::LG5:22118784-22120784(+)
TATTAGATTGTCTAATAATATTTAATACATCATTTATACATAAAACTATATATTAAATTAACGTACATACACTACTGAATTGAAATCAAGTTTCTACTAACACTTAAAATAAAAAAAATTAAGTTTTTTTCTAATGTCTTCCATATCTGCAACTTTCATGAAAGATAAATCATTAAAGATCTACGAATAAAATAATAATAATACCTTTGATAAACATTTATGAAGAACGTTTTCGAAATCATATATAGACCAAATAAATTATAATACCTTTGATAAACATACTCTACATCATTCGCGCTTAATTCTAGTAAAGGTTTGTATTAAGAACCTCTGTCAATCCTATGGAGAATGAATAACTCCTAACACTCTGCAGATAAATAAAATATAAAAAAAAATTCTAAAACAGATGACACCATAATAAATAAAAACAAAATCTTATTCGATTCAGGTCAGCCTGTGATGAAGAAAAAAGATTCTTCAAATTTTCAACAATTATAAGAAAAATACATACAAAGTTTCAATAAAAATATTGGATGATAAACAATGTGATTTGAAATTATTAGAAATGAACTGAAACTAGCTCAATTCAAGAAGCTAACTTAAGCGAACCGGAAATCCCAAATAAATACATGGTCGGTCAGGTTTGGTGTTAGAGTTATTAAAAGTCATCCATGAGTCTTTGACAAATTAAGATTTTGGGTAAATGGTCCCCATAGAGGAAGGAAAGACAAGCATACACCAATAAATGAAATTAATACAGTTGCAAAATAGAAGTGAAAAGAAAATGACTAAAACGAAACCAAAAAGCAAGATAAGAATAAAAGTTGAAGAAGAAAAAAAAAATAGTTACAGTACCAACCTCCCGAAAATTCCACAATTGATTATGCAAGCAGGTCCAAAAGGGCTTTGTTGCATTCAACATTAAGCAGACAGATTGTATTATTAGTTTATTTGACAGAAGAAGAAAATTCAGGTCAGAAGGCAAAGGTGATAGGTAAAGGTCCAAGGATATTGCTCAACAAATACACAACAATAGGATTTAATCCCAGAGCATGGAAGGGATCTGCCAATCCCAAAACTGAAATGACAGAACAGTCACTATTTTAATTATATTATAAATGAAATAAAATTTTATATTCTTTCAGCTGATTACTACATATTTCATTTCAACTAAAACAACTTATGGTAAATGAACATTAAAGATTACAAAACTAAACCAAAAATCAACATATTTTGCAGCTAGTTGAGTATAAATATTGCAATATCAGTGAAATTAAAATTGCACAATCAAATTGCTCAAAAATCACTGTTGAAGTATGAATAAGAAAATGGAGCAGAAACTATCTTTGGTTTTCTACTTTGGGTGCTTGCTACGCCATTTTGTCCAATGCCAGCCACTTGTTTGGGTATGTTGTCATCATATAATATATTTTACTTTTTTTTTTTTGAAAAATTACAAAATAATTTTTTAATTCTAATCATATTTTATATGCATAATTTCAGTAGTGGCTTGGTCGTCTAAGCAAGACACCCCTTCCCACAACAAGAACTTGAACAAGTGGAGAAAATGACACCGCATGGTCGAGAACGCGAGAGATGCGGAATGCGAAACAAAGGACAAATGGTGAAATGGAAGAAACTGCGAAACCCTTCTTTCTTCCGAAATTGTCCTCTACGTCATATTTCAATTTTTTTAAATTTATTTGAAATGCACCAATGAAACGCTGTTGTTAAAATGTTATCACCAATTGGTTGGTTGTTAAAGAAGCCTTATCGTATTTTGCCTCTGTCTAACTGTGGAAGACGTTCGTGTCGTTTCGTAGAAGAAAAATAGTTAATACTTCATAGTCTTCCTCCTCTTTCAATACTATATGCTAAAAGATAGTAGCAAGTGGCATTCGTTATTTAGTTGTTGTCGAATCCATTCATCAACACAGTTGACTTCGAAACACTGTTTTGCCTTCCCATCTCATCTCCGCCGTTTGCATTTCAGACAACTA


Gene Sequence:
>Vu_20377(+)
ATGGCCGAATCATTTATCTTCAGCATTGCAGAGTCACTCATAGCAAATCTTACTTCTCGTACTTTTCAAGAAGCTTCTCGATTGGTGGGTTTATACGACGATCTTCAAGACCTTACCAACACTCTCTCTTTAGTCAAGGACGTTTTGTTAGATGCTCAGCAAAAGCAGGAACACAACCATGAGCTCCGTCGATGGCTCTCTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTCCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTCAGTCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTACAAAATGGCTCAACAAATTAAAGATATCAACAACAGACTAGACAAGGTTGCAGCTAATAAGCGTAAGTTTAGTCTTCAAATGAGTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCTCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTGATGATGATGATGATACAAGTCTCTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACACTTGCAAAGTTTGTGTTCAATGATAAGAAGATCCAGGAGTGCTTTCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCCGTGAATGATTCAGAATCTGATCATGCTCCTATTCACCAAATGAATTTGAACATGTTAGATCTGGAACAACTGCAAAATCAACTCAAAAACAAACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGTATGAGTTGAGGGATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAATCCTTGTGACTACACGAAGTCGTTCAATTGCTTCCATGATGGGCACAATTCCCTCTCATATTTTAGAAGGTCTTTCTGAGGAGGATTCAATTTCTGTGTTAGTCAAATGGGCATTTAAAGAAGGAGAAGAGGAAAAATATCCTCACTTAGTAAATATTGGGAGAGAAATTGTGAAAAAATGCGGAGGGGTTCCTTTGGCAGTGAGAACATTAGGCAGTTTACTATTCTCAAAATTTGAGGCCAATGAATGGGAATATGTGAGTCAAAATGAAATCTGGATTTTGCCTCAGAAAAAGGATGACATTTTACCTGCCCTTAAATTGAGTTATGATCTCATGCCCTCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAAGATTATGAATATATTAGTTATGAAATAATTTGGCTTTGGGGGGCACTTGGACTCATCGCATTACCAAAAACGGATAGAAAACGTGAAGATGTAGCCAATCAATATTTGCATGAACTTCTGTCAAGATCCTTTCTTCAAGATTTTCAAAACTTCGGCACTGTGTATAAATTCAGAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCTATGGATGAGTGTCTACATATCAATTCCAACATTCAAAATATTCCTGATAATATTCGGCATCTGTCTTTTGCCGAAAGGGGTTTGTTTAGCAATTTAGTCACCAAAAAATCAACAGCTGTGAGAACCGTCCTGTTTCCAAATGAGGTAGCAGCTGCCAACGGTAAAGCTATACTAAAGACTTGTCTGGAAAAGTTCAAATGCTTGCGTGTTTTGGATTTGAGTGGTGCAACATTTGAGACTTTGCCTCGTAAAATTAGCAAGTTGAAACATCTGAGATATCTGGACATTAGCAAAAATCCTAACATTAAGAGACTCCCCGACTCTATTTGCAAGCTCCAATGTTTGGAAGTGTTGAACCTTGGAGGATGCGTGGAGTTGGAAGCATTGCCCAAAGGATTAAGAAAACTTATCAGTCTTTATTGTTTTGAGTTTTCCATAAAGCAAACTGTTTTGCCTTTGAATGAAATCGCCAACTTGGGGTCGCTTGAATTATTGACTGTTGGATCATGCCATAATGTGGAATCCGTATTTGGAGGGATGAAATTTCCTACTCTTAAAACTTTGATAGTTCAAGACTGTCAGAGTCTTAAGTTTCTGCTGCTGGAGTGTAAAAATTTTCCTCAATTAGAAACATTGTATGTTGTAGAGTGCAGTAATTTGGATTTGGAACTGTGGAAGGGAGATCATGAAGAACAAAGCCCCAAGCTGAAGTTAAAATTTGTTATATTTTCAACTTTATCACAACTAGTGACCTTACCTAAATGGTTTGAGGAAGTTGTCAACTCCTTACAGTGTTTGATTGTTGTGGATTGCCACAATTTTGAATCATTTCCAGACTGGCTGCCAGTTCTGACTGATATGAAAACTCTTGCTATAAAAAATTGTCCAAAGTTGGTTGCGCTCCCGGATAACATTCATCTCTTCACCACCCTTGAATATTTGACGATTGTAGATTGTGCAGCTGACTTACATAAAAAGTATGAGCCGCATGTTGGAGAGTTTTGGCCCAAAATATCACACATATCGACAATATTGACATGGATGAACCAGAAGATTTAG