Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20376 LG5 22102124 22104733 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/G 22102129 synonymous_variant p.Ala2Ala
C/A 22102139 missense_variant p.Leu6Ile
T/C,* 22102149 missense_variant p.Ile9Thr
T/A,C 22102150 synonymous_variant p.Ile9Ile
A/G 22102171 synonymous_variant p.Lys16Lys
A/G 22102184 missense_variant p.Thr21Ala
C/T 22102197 missense_variant p.Ala25Val
T/G 22102205 missense_variant p.Leu28Val
C/G 22102210 synonymous_variant p.Val29Val
G/A 22102212 missense_variant p.Gly30Asp
T/C 22102217 missense_variant p.Tyr32His
C/A 22102240 synonymous_variant p.Thr39Thr
C/T 22102258 synonymous_variant p.Val45Val
A/C 22102263 missense_variant p.Asp47Ala
C/T 22102268 synonymous_variant p.Leu49Leu
C/G 22102280 missense_variant p.Gln53Glu
G/A 22102288 synonymous_variant p.Lys55Lys
A/G 22102294 synonymous_variant p.Glu57Glu
C/A 22102301 missense_variant p.His60Asn
T/C 22102312 synonymous_variant p.Arg63Arg
G/A 22102314 missense_variant p.Arg64Gln
T/A 22102322 missense_variant p.Ser67Thr
C/T 22102323 missense_variant p.Ser67Phe
A/G 22102327 synonymous_variant p.Gln68Gln
C/A 22102345 synonymous_variant p.Ser74Ser
A/C 22102347 missense_variant p.Asp75Ala
C/T 22102378 synonymous_variant p.Cys85Cys
G/T 22102387 synonymous_variant p.Leu88Leu
A/G 22102422 missense_variant p.Lys100Arg
A/C 22102432 synonymous_variant p.Val103Val
C/T 22102441 synonymous_variant p.Phe106Phe
G/C 22102449 missense_variant p.Ser109Thr
T/C 22102450 synonymous_variant p.Ser109Ser
C/A 22102469 missense_variant p.Arg116Ser
G/T 22102481 missense_variant p.Ala120Ser
A/C 22102485 missense_variant p.Gln121Pro
C/G 22102516 missense_variant p.Asp131Glu
A/G 22102536 missense_variant p.His138Arg
G/T 22102557 missense_variant p.Ser145Ile
T/C 22102563 missense_variant p.Val147Ala
A/T 22102599 missense_variant p.His159Leu
A/C 22102610 missense_variant p.Ser163Arg
G/C 22102611 missense_variant p.Ser163Thr
C/T 22102664 synonymous_variant p.Leu181Leu
G/A 22102682 missense_variant p.Asp187Asn
A/C,G 22102702 synonymous_variant p.Leu193Leu
T/G 22102726 missense_variant p.Ile201Met
C/T 22102732 synonymous_variant p.Gly203Gly
T/C,* 22102870 synonymous_variant p.Asn249Asn
G/A 22102871 missense_variant p.Asp250Asn
G/A 22103020 intron_variant
T/C 22103035 intron_variant
T/G 22103086 intron_variant
T/C 22103311 intron_variant
A/C 22103332 intron_variant
T/C 22103335 intron_variant
C/T 22103341 intron_variant
G/A 22103356 intron_variant
C/A 22103376 intron_variant
C/G 22103380 intron_variant
G/A 22103389 intron_variant
T/C 22103395 intron_variant
C/G 22103407 intron_variant
A/G 22103412 intron_variant
G/C 22103459 intron_variant
A/C 22103465 intron_variant
C/A 22103466 intron_variant
A/G 22103479 intron_variant
G/T 22103484 intron_variant
A/G 22103492 intron_variant
G/A 22103539 intron_variant
G/T 22103543 intron_variant
C/T 22103552 intron_variant
T/G 22103563 intron_variant
A/C 22103609 intron_variant
G/C 22103619 splice_acceptor_variant&intron_variant
T/G,* 22103665 missense_variant p.Leu280Arg
C/T 22103671 missense_variant p.Thr282Met
A/C 22103680 missense_variant p.Tyr285Ser
C/T 22103681 synonymous_variant p.Tyr285Tyr
A/G 22103682 missense_variant p.Ile286Val
C/T 22103686 missense_variant p.Ser287Leu
T/C 22103713 missense_variant p.Ile296Thr
G/A 22103722 missense_variant p.Gly299Asp
C/A 22103737 missense_variant p.Pro304Gln
G/A 22103742 missense_variant p.Val306Met
T/G 22103743 missense_variant p.Val306Gly
G/A 22103744 synonymous_variant p.Val306Val
G/T 22103745 missense_variant p.Val307Phe
T/C 22103750 synonymous_variant p.Cys308Cys
A/G 22103753 synonymous_variant p.Leu309Leu
C/T 22103781 synonymous_variant p.Leu319Leu
C/A,G 22103794 missense_variant p.Ser323Tyr
C/A 22103795 synonymous_variant p.Ser323Ser
A/T 22103805 missense_variant p.Met327Leu
A/G 22103808 missense_variant p.Arg328Gly
G/T 22103809 missense_variant p.Arg328Met
T/C 22103811 stop_lost p.Ter329Glnext*?
A/G 22103812 stop_lost p.Ter329Trpext*?
C/A 22103814 missense_variant p.Gln330Lys
G/A 22103816 synonymous_variant p.Gln330Gln
C/T 22103817 synonymous_variant p.Leu331Leu
G/T 22103825 synonymous_variant p.Thr333Thr
A/G 22103828 synonymous_variant p.Val334Val
G/T 22103847 missense_variant p.Val341Phe
A/G 22103853 missense_variant p.Lys343Glu
T/C 22103866 missense_variant p.Val347Ala
A/G 22103869 missense_variant p.Tyr348Cys
A/G 22103884 stop_retained_variant p.Ter353Ter
G/C 22103888 synonymous_variant p.Val354Val
G/A 22103916 missense_variant p.Glu364Lys
G/A 22103921 synonymous_variant p.Leu365Leu
G/T 22103947 missense_variant p.Trp374Leu
A/G 22103957 synonymous_variant p.Ala377Ala
A/T,G 22103958 stop_gained p.Lys378*
C/T 22103965 missense_variant p.Pro380Leu
C/T 22103980 missense_variant p.Ser385Phe
G/A 22103984 synonymous_variant p.Pro386Pro
C/T 22103992 missense_variant p.Ser389Phe
T/A 22104012 stop_lost p.Ter396Lysext*?
T/C 22104015 missense_variant p.Cys397Arg
G/A 22104021 missense_variant p.Ala399Thr
A/C 22104027 missense_variant p.Lys401Gln
G/A 22104040 missense_variant p.Ser405Asn
G/A 22104059 synonymous_variant p.Lys411Lys
A/G 22104066 missense_variant p.Lys414Glu
A/G 22104067 missense_variant p.Lys414Arg
T/G 22104088 missense_variant p.Val421Gly
G/C 22104092 missense_variant p.Leu422Phe
G/T 22104094 missense_variant p.Ser423Ile
G/A 22104104 synonymous_variant p.Gln426Gln
G/A 22104106 missense_variant p.Ser427Asn
C/G 22104107 missense_variant p.Ser427Arg
T/C 22104112 missense_variant p.Leu429Pro
A/G 22104130 missense_variant p.Lys435Arg
T/C 22104133 missense_variant p.Leu436Ser
A/G 22104138 missense_variant p.Thr438Ala
G/T,A 22104144 missense_variant p.Gly440Ser
C/G 22104147 missense_variant p.Arg441Gly
G/A 22104152 synonymous_variant p.Leu442Leu
A/T,* 22104156 missense_variant p.Thr444Ser
C/A,* 22104157 missense_variant p.Thr444Asn
G/A 22104167 synonymous_variant p.Leu447Leu
G/A 22104168 missense_variant p.Asp448Asn
C/T 22104171 missense_variant p.His449Tyr
T/A,G 22104231 missense_variant p.Ser469Thr
A/G 22104237 missense_variant p.Met471Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20376.1
MAESFLFSIAESLIAKLASRTFQEASRLVGLYDDLQDLTNTLSLVKDVLLDAQQKQEHNHELRRWLSQLKTVFSDAEDVLDEFECQTLRKKVVKAHGSTKDKVSHFFSSSNPLVFRYKMAQQIKDINNRLDKVAANKHKFSLQTSDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPDDDDTSLSVIPIVGIGGLGKTTLAKFVFNDKKIQECFPLKMWVCVSDDFDIKQLIIKIINSVNDSESDHAPFHQMNLNIFRIHDLVHDLALFVAMDECLHINSNIQNIPDNIRHLSFAESGLFSNLVTKKSAAVRTVLFPNEVAAANGKAILKTCLEKFKCLRVLDLSGATFETLPRRIGKLKHLRYLDISKNPNIKRLPDSICKLQSLLVLSLEGCVELEALPKGLKKLISLYCFEFSTEQTVLPMNEIANLGSLEYLSIGSCHNVESIFGGMKFPTLKTLFVYDCQSLKSLLLEGKNFPQLKTLIIDGCSNLDLELWKGDHEEQSPKLKLKFVLFSTLSQLVTLPKWFQEAANSLQCLLVYDCHNFESFPDWLPVLTDLKTLEIRNCPKLVSLPDNIHLFSALESLRIEGCAADLCRKYESHVGEFWPKISHISNIFIDEAEDLDEE*


CDS Sequence:
>Vu_20376.1
ATGGCCGAATCATTTCTCTTCAGCATTGCAGAGTCACTCATAGCAAAACTTGCTTCTCGTACTTTTCAAGAAGCTTCTCGATTGGTCGGTTTATACGACGATCTTCAAGACCTTACCAACACTCTCTCTTTAGTCAAGGATGTGCTGTTAGATGCTCAGCAAAAGCAGGAACACAACCATGAGCTCCGTCGATGGCTCTCTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTACAAAATGGCTCAACAAATTAAAGATATCAACAACAGACTAGACAAGGTTGCAGCTAATAAGCATAAGTTTAGTCTTCAAACGAGTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCTCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATCATAGAGCTTCTGATGCAGCAGAATCCTGATGATGATGATACAAGTCTATCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACACTTGCAAAGTTTGTGTTCAATGATAAGAAGATCCAGGAGTGCTTTCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCCGTGAATGATTCAGAATCTGATCATGCTCCTTTTCACCAAATGAATTTGAACATATTCAGAATACATGATCTGGTGCATGATCTCGCCCTATTTGTTGCTATGGACGAGTGTCTACATATCAATTCCAACATTCAAAATATTCCTGATAATATTCGGCATCTGTCTTTTGCCGAAAGTGGTTTGTTTAGCAATTTAGTCACCAAAAAATCAGCAGCTGTGAGAACCGTCCTGTTTCCAAATGAGGTAGCAGCTGCCAACGGTAAAGCTATACTAAAGACGTGTCTGGAAAAGTTCAAATGTTTACGTGTTTTGGATTTAAGTGGTGCAACATTTGAGACTTTGCCTCGTAGAATTGGCAAGTTGAAACATCTGAGATATCTGGACATTAGCAAAAATCCCAACATTAAGAGACTCCCCGACTCTATCTGCAAGCTCCAAAGTTTGCTAGTGTTGAGCCTTGAAGGATGCGTGGAGCTGGAAGCATTGCCCAAAGGATTAAAAAAACTTATCAGTCTCTATTGTTTTGAGTTTTCCACAGAGCAAACTGTTTTGCCTATGAATGAAATTGCCAACTTGGGGTCGCTTGAATACTTGAGTATTGGATCATGCCATAATGTGGAATCCATATTTGGAGGGATGAAATTCCCTACTCTTAAAACATTGTTCGTTTATGACTGTCAGAGTCTTAAGTCTCTGCTGCTGGAGGGTAAAAATTTTCCTCAATTGAAAACATTGATTATTGATGGATGCAGTAATTTGGATTTGGAACTGTGGAAGGGAGATCATGAAGAACAAAGCCCCAAGCTGAAGTTAAAATTTGTTCTATTTTCAACTTTGTCACAACTGGTGACCTTACCTAAATGGTTTCAGGAAGCTGCCAACTCCTTACAGTGTTTGCTTGTTTACGATTGCCACAATTTTGAATCATTTCCAGACTGGCTGCCAGTTCTGACTGATTTGAAAACTCTTGAAATAAGGAATTGTCCAAAGTTGGTATCGCTCCCGGATAACATCCATCTCTTCAGCGCCCTTGAAAGTTTGAGGATTGAAGGTTGTGCAGCTGACTTATGTAGAAAGTATGAGTCACATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAGCAATATTTTCATTGATGAAGCAGAAGATTTAGACGAAGAGTAA


Promoter Sequence:
>Vu_20376::LG5:22100124-22102124(+)
TTTTTTATAAAAAAAATTGATTATTAATTGACATCCAATGAAATTATAATCACGTATTATTCTCTCATCCAATTAATTTATCATCAATATAACTCCAAATGAACAAATTCAATTGAACTAATAAAATAGAATTCATGTCTAATAATATTTAATACATCATTTATACATAAAACTATATATTAAATTCAAATATTAAATTAATGTACATAATTGTGAAGTTTCTACTAACACATCCAGTTCTTTCTAATGTCTTTCATGTCTGCAACTTTCATGGAAGATAAATCATTAAAGATCTACAAATAAAATAATAATACCTTTGATAAACATTTAAGAAGAACGTTTTCGAAATCATATATAGACCAAGTAAATTATAATACCTTTGATAAACATACTCTACATCATTCGCGCTTAATTCTAGTACAAGGTTTGTATTAAGAACCTCTGTAATTCCTATGGAGAATGAATAACTCCCAACACTATGCAGATAAATAAAATATAAAAAAAAAATTCTAACAGATGACACCATAATAAATAAAAACAAAATTATTGCAACGTAACTGGATGTTGGTTTATCCTTTCAAACCTTCCTTCCAAACCATAGAGTGGCACTTGATTCCTATTTATTCGATTCAGGTCACCTGTTATGAAGAAAAAAGATTCTTCAAATTTTCAACAATTATAAGAAAAATGCATACAAAGTTTCAATAAAAATATTGGATGATAAACAATGTGATTTGAAATTATTAGAAATGAACTGAAACTAGCTCAATTCAAGAAGCTAACTTAAGCGAACCGGAAATCCCAAATAAATACATGGTCAGGTTTGGTGTTAGAGTTATTAAAAGTCATCCATGAGTCTTTAACAAATTAAGATTTTGGGTAAATGGTCCCCATAGAGGAAGGAAAGACAAGCATACACCAATAAATGAAATTAATACAGTTGCAAAATAGAAGTGAAAACAATAGGATTTAATCCCAGAGCATGGAAGGGATCTGCCAATCCCAAAACTGAAATGACAGAACAGTCACTATTTTAATTATATTATAAATGAAATAAAATTTTATATTCTTTCAGCTGATTACTACATATTTCATTTCAACTAAAACAACTTATGGTAAATAAACATTAAAGATAACAAAACTAAACCAAAAATCAACATATTTTGCAGCTAGTTGAGTATAAATATTGCAATATCAGTGAAATTAAAATGGCACAATCAAATTGCTCAAAAATCAGACAAACTAGCAAAGTCATCATGCAAAGCAAGTGAACATATTTCAAGCACCTGTCTTTCGTAATTAGTTTGAGCTGCCCGCCATTTTTGATGCTCCCTGTCCAGGTTTTCCTTTAACCCTGATAGCTGAATTTCCAAAAATTTGAGAACTACACAGAAAAGAAAAGTAATAATTTAAATTTTTATTGTTAAAGTAATCAAAGCTTATTATTTTAAACACACTGTCAATTTAAAAATACAAATTTTTAAGTTCTTGCATAAAAAAAAAGTTTCATCTTCAACATTACAAAATAGGTTGAAATTATAAAAAAATAATTTTAAAATATATAAACATATTTTAAATATATAAAAAAGTTTAATTTTTTATAAAACATATGAACAAAGATAATTAAAACTACTGAGAATGTACAAACACTGTTGAAGTATGAATAAGAAAATGGAGCAGAAACTATCTTTGGTTTTCTACTTTGGGTGCTTGCTACGCCATTTTGTCCAATGCCAGCCACTTGTTTGGGTATGTTGTCATCATATAATATATTTTACTTATTTTTTTCTTCAATGGTCGAGATGCGGAATGCGAAACAAAGGACAAATGGTGAAAGGGAGAGAGGGGATAAGAAGAGGTGAGAAGCGGTGGTTGGAAATTAATTTGGTGAAAGGGAGAGAGGGGATAGTTGTTGTCGAATCCATTCATCAACACAGTTGACTTCGAAACACTGTTTTGCCTTCCCATCTCATCTCCGCCGTTTGCATTTCAGACAACTA


Gene Sequence:
>Vu_20376(+)
ATGGCCGAATCATTTCTCTTCAGCATTGCAGAGTCACTCATAGCAAAACTTGCTTCTCGTACTTTTCAAGAAGCTTCTCGATTGGTCGGTTTATACGACGATCTTCAAGACCTTACCAACACTCTCTCTTTAGTCAAGGATGTGCTGTTAGATGCTCAGCAAAAGCAGGAACACAACCATGAGCTCCGTCGATGGCTCTCTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTACAAAATGGCTCAACAAATTAAAGATATCAACAACAGACTAGACAAGGTTGCAGCTAATAAGCATAAGTTTAGTCTTCAAACGAGTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCTCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATCATAGAGCTTCTGATGCAGCAGAATCCTGATGATGATGATACAAGTCTATCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACACTTGCAAAGTTTGTGTTCAATGATAAGAAGATCCAGGAGTGCTTTCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCCGTGAATGATTCAGAATCTGATCATGCTCCTTTTCACCAAATGAATTTGAACATGTTAGATCTGGAACAACTGCAAAATCAACTCAAAAAGAAACTTTCCGGTCAAAAGTTCTTGCTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGTATGAGTTGAGGAATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAATCCTTGTGACTACACGAAGTCATTCAATTGCTTCCATGATGGGCACAATTCCCTCTCATATTTTAGAAGGTCTTTCTGAGGAGGATTCAATATCTGTGTTAGTCAAATGGGCATTTAAAGAAGGAGAAGAGCAAAAATATCCTCATTTAGTAAATATTGGGAGAGAAATTGTGAAAAAATGCGGAGGGGTTCCTTTGGCAGTGAGAACATTAGGCAGTTTACTATTCTCAAAATTTGAGGCCAATGAATGGGAATATGTGAGTCAAAATGAAATCTGGAATTTGCCTCAGAAAAAGGATGACATTTTACCTGCCCTTAAATTGAGTTATGATCTCATGCCCTCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAAGATTATGAATATACTAGTTATGAAATAATTTGGCTTTGGAGGGCACTTGGACTCATCGCATTACCAAAAACGGATAGAACACGTGAGGATGTAGCCAATCAGTATTTGCATGAACTTCTGTCAAGATCCTTTCTTCAAGATTTTCAAAACTTCGGCACTGTGTATAGATTCAGAATACATGATCTGGTGCATGATCTCGCCCTATTTGTTGCTATGGACGAGTGTCTACATATCAATTCCAACATTCAAAATATTCCTGATAATATTCGGCATCTGTCTTTTGCCGAAAGTGGTTTGTTTAGCAATTTAGTCACCAAAAAATCAGCAGCTGTGAGAACCGTCCTGTTTCCAAATGAGGTAGCAGCTGCCAACGGTAAAGCTATACTAAAGACGTGTCTGGAAAAGTTCAAATGTTTACGTGTTTTGGATTTAAGTGGTGCAACATTTGAGACTTTGCCTCGTAGAATTGGCAAGTTGAAACATCTGAGATATCTGGACATTAGCAAAAATCCCAACATTAAGAGACTCCCCGACTCTATCTGCAAGCTCCAAAGTTTGCTAGTGTTGAGCCTTGAAGGATGCGTGGAGCTGGAAGCATTGCCCAAAGGATTAAAAAAACTTATCAGTCTCTATTGTTTTGAGTTTTCCACAGAGCAAACTGTTTTGCCTATGAATGAAATTGCCAACTTGGGGTCGCTTGAATACTTGAGTATTGGATCATGCCATAATGTGGAATCCATATTTGGAGGGATGAAATTCCCTACTCTTAAAACATTGTTCGTTTATGACTGTCAGAGTCTTAAGTCTCTGCTGCTGGAGGGTAAAAATTTTCCTCAATTGAAAACATTGATTATTGATGGATGCAGTAATTTGGATTTGGAACTGTGGAAGGGAGATCATGAAGAACAAAGCCCCAAGCTGAAGTTAAAATTTGTTCTATTTTCAACTTTGTCACAACTGGTGACCTTACCTAAATGGTTTCAGGAAGCTGCCAACTCCTTACAGTGTTTGCTTGTTTACGATTGCCACAATTTTGAATCATTTCCAGACTGGCTGCCAGTTCTGACTGATTTGAAAACTCTTGAAATAAGGAATTGTCCAAAGTTGGTATCGCTCCCGGATAACATCCATCTCTTCAGCGCCCTTGAAAGTTTGAGGATTGAAGGTTGTGCAGCTGACTTATGTAGAAAGTATGAGTCACATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAGCAATATTTTCATTGATGAAGCAGAAGATTTAGACGAAGAGTAA