Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20375 LG5 22094474 22097089 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 22094487 missense_variant p.Tyr5Phe
C/T 22094508 missense_variant p.Ser12Leu
A/G 22094521 synonymous_variant p.Lys16Lys
C/A 22094529 missense_variant p.Ser19Tyr
G/A 22094562 missense_variant p.Gly30Asp
A/C 22094590 synonymous_variant p.Thr39Thr
C/G 22094630 missense_variant p.Gln53Glu
A/G 22094644 synonymous_variant p.Glu57Glu
T/C 22094671 synonymous_variant p.Leu66Leu
C/A 22094701 synonymous_variant p.Ala76Ala
A/G 22094704 synonymous_variant p.Glu77Glu
G/A 22094835 missense_variant p.Arg121Gln
T/C 22094904 missense_variant p.Met144Thr
G/A 22095168 missense_variant p.Cys232Tyr
C/G,A 22095304 intron_variant
T/A 22095309 intron_variant
T/C 22095341 intron_variant
C/T 22095349 intron_variant
T/G 22095377 intron_variant
A/T 22095378 intron_variant
T/C 22095391 intron_variant
T/C 22095418 intron_variant
T/C 22095433 intron_variant
C/G 22095466 intron_variant
A/G 22095470 intron_variant
G/A 22095489 intron_variant
T/A 22095496 intron_variant
G/A 22095502 intron_variant
T/C 22095508 intron_variant
A/G 22095511 intron_variant
G/C 22095518 intron_variant
A/T 22095523 intron_variant
C/A 22095526 intron_variant
G/C,* 22095554 intron_variant
A/G 22095571 intron_variant
A/T 22095622 intron_variant
A/G 22095718 intron_variant
T/G 22095788 intron_variant
T/A 22095789 intron_variant
A/C 22095797 intron_variant
C/G,* 22095815 intron_variant
A/C 22095817 intron_variant
G/C,A 22095821 intron_variant
G/A 22095825 intron_variant
A/G 22095828 intron_variant
A/G 22095835 intron_variant
T/C 22095837 intron_variant
G/T 22095840 intron_variant
G/T 22095841 intron_variant
G/A 22095848 intron_variant
A/G 22095859 intron_variant
G/C 22095891 intron_variant
A/G 22095895 intron_variant
T/G 22095919 intron_variant
C/A 22095953 intron_variant
C/A 22095961 intron_variant
C/T 22095964 intron_variant
T/A,G 22095968 intron_variant
G/T 22095970 intron_variant
A/G 22095975 splice_region_variant&intron_variant
C/T 22095976 splice_region_variant&intron_variant
A/G 22096038 missense_variant p.Ile286Val
A/G,C 22096093 missense_variant p.Gln304Pro
G/A,T 22096098 missense_variant p.Val306Met
A/T 22096106 stop_lost p.Ter308Cysext*?
C/T 22096111 missense_variant p.Ala310Val
G/A 22096161 missense_variant p.Val327Met
C/T 22096173 synonymous_variant p.Leu331Leu
G/C,T 22096176 missense_variant p.Ala332Pro
A/G 22096185 missense_variant p.Lys335Glu
T/G 22096201 missense_variant p.Leu340Arg
A/G 22096235 stop_lost p.Ter351Trpext*?
G/C 22096244 synonymous_variant p.Val354Val
G/T 22096303 stop_lost p.Ter374Leuext*?
A/G 22096304 stop_lost p.Ter374Trpext*?
G/A 22096310 synonymous_variant p.Leu376Leu
G/C 22096311 missense_variant p.Ala377Pro
A/G 22096313 synonymous_variant p.Ala377Ala
A/G 22096314 missense_variant p.Lys378Glu
A/C 22096315 missense_variant p.Lys378Thr
C/T 22096321 missense_variant p.Pro380Leu
A/C 22096376 stop_lost p.Ter398Cysext*?
A/C 22096384 missense_variant p.Gln401Pro
A/G 22096415 synonymous_variant p.Lys411Lys
A/G 22096422 missense_variant p.Lys414Glu
A/G 22096423 missense_variant p.Lys414Arg
G/C 22096448 missense_variant p.Leu422Phe
G/T 22096450 missense_variant p.Ser423Ile
G/A 22096460 synonymous_variant p.Gln426Gln
G/A 22096462 missense_variant p.Ser427Asn
T/C 22096468 missense_variant p.Leu429Pro
A/G 22096486 missense_variant p.Lys435Arg
T/C 22096489 missense_variant p.Leu436Ser
G/C 22096518 missense_variant p.Val446Leu
A/T 22096520 synonymous_variant p.Val446Val
G/A 22096524 missense_variant p.Asp448Asn
C/T 22096531 missense_variant p.Ala450Val
T/C 22096552 missense_variant p.Leu457Ser
C/T 22096567 missense_variant p.Ser462Phe
C/T 22096568 synonymous_variant p.Ser462Ser
C/G 22096572 missense_variant p.Leu464Val
A/T 22096582 missense_variant p.His467Leu
C/A 22096588 stop_gained p.Ser469*
T/C 22096592 synonymous_variant p.Phe470Phe
T/A 22096594 missense_variant p.Met471Lys
G/A 22096628 synonymous_variant p.Arg482Arg
G/T 22096629 missense_variant p.Val483Leu
C/T 22096640 synonymous_variant p.Phe486Phe
G/A 22096648 stop_retained_variant p.Ter489Ter
A/G 22096649 stop_lost p.Ter489Trpext*?
G/A 22096657 stop_retained_variant p.Ter492Ter
A/G 22096658 stop_lost p.Ter492Trpext*?
A/G 22096661 synonymous_variant p.Leu493Leu
T/A 22096666 missense_variant p.Met495Lys
G/A 22096668 missense_variant p.Asp496Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20375.1
MAESYLFSVAESLIAKLASRTFQEASRLVGLYDDLQDLTNTLSLVKDVLLDAQQKQEHNHELRRWLSQLKTVFSDAEDVLDEFECQTLRKKVVKAHGSTKDKVSHFFSSSNPLVFRYKMARQIKDINNRLDKVADNKRKFSLQMSDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPDDDDDDTSLSVIPIVGIGGLGKTTLAKFVFNDKKIQECFPLKMWVCVSDDFDIKQLIIKIINSVNDSESDHAPIYQMNLNIIHDLVHDLALFVAMDECLHINSNIQNIPDNIRHLSFAESGLISNLITKKSAAVRTVMFPSGVAAGNCKAILKTCLEKFKCLRVLNLSGATFETLPRKIGKLKHLRYLNIGKNPNIKRLPDSICKLQSLQVLSLAGCVELEALPKRLKKLISLYCFEFSTEQTVLPMNEIANLGWLEVLSIGSCHNVESIFGGMKFPTLKTLFVYDCQSLKSLLLEGKNFPQLKTLIIDGCSNLDLELWKGDHEEQSPKLKLKFVLFSTLSQLVTLPKWFQEAANSLQCLLVYDCHNFESFPDWLPVLTDLKTLEIRNCPKLVSLPDNIHLFSALESLRIEGCAADLCRKYESHVGEFWPKISHISNIFIDEAEDLDEE*


CDS Sequence:
>Vu_20375.1
ATGGCCGAATCATATCTCTTCAGCGTGGCAGAGTCACTCATAGCAAAACTTGCTTCTCGTACTTTTCAAGAAGCTTCTCGATTGGTCGGTTTATACGACGATCTTCAAGACCTTACAAACACTCTCTCTTTAGTCAAGGACGTTTTGTTAGATGCTCAGCAAAAGCAGGAACACAACCATGAGCTCCGTCGATGGCTTTCTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTACAAAATGGCTCGACAAATTAAAGATATCAACAACAGACTAGACAAGGTTGCAGATAATAAGCGTAAGTTTAGTCTTCAAATGAGTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCTCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTGATGATGATGATGATGATACAAGTCTCTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACACTTGCAAAGTTTGTGTTCAATGATAAGAAGATCCAGGAGTGCTTTCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCCGTGAATGATTCAGAATCTGATCATGCTCCTATTTACCAAATGAATTTGAACATAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCTATGGATGAGTGTCTACATATCAATTCCAACATTCAAAATATTCCTGATAATATTCGGCATCTGTCTTTTGCAGAAAGTGGTTTGATTAGCAATTTAATCACCAAAAAATCAGCGGCTGTGAGAACCGTCATGTTTCCAAGTGGGGTAGCAGCTGGCAACTGTAAAGCTATACTAAAGACTTGTCTGGAAAAGTTCAAATGCTTACGTGTTTTGAATTTAAGTGGTGCAACATTTGAGACTTTGCCTCGTAAAATTGGCAAGTTGAAACATCTGAGATATCTGAACATTGGCAAAAATCCCAACATTAAGAGACTCCCCGACTCTATCTGCAAGCTCCAAAGTTTGCAAGTGTTGAGCCTTGCAGGATGCGTGGAACTGGAAGCATTGCCCAAAAGATTAAAAAAACTTATCAGTCTCTATTGTTTTGAGTTTTCCACAGAGCAAACTGTTTTGCCTATGAATGAAATTGCCAACTTGGGGTGGCTTGAAGTCTTGAGTATTGGATCATGCCATAATGTGGAATCCATATTTGGAGGGATGAAATTCCCTACTCTTAAAACATTGTTCGTTTATGACTGTCAGAGTCTTAAGTCTCTGCTGCTGGAGGGTAAAAATTTTCCTCAATTGAAAACATTGATTATTGATGGATGCAGTAATTTGGATTTGGAACTGTGGAAGGGAGATCATGAAGAACAAAGCCCCAAGCTGAAGTTAAAATTTGTTCTATTTTCAACTTTGTCACAACTGGTGACCTTACCTAAATGGTTTCAGGAAGCTGCCAACTCCTTACAGTGTTTGCTTGTTTACGATTGCCACAATTTTGAATCATTTCCAGACTGGCTGCCAGTTCTGACTGATTTGAAAACTCTTGAAATAAGGAATTGTCCAAAGTTGGTATCGCTCCCGGATAACATCCATCTCTTCAGCGCCCTTGAAAGTTTGAGGATTGAAGGTTGTGCAGCTGACTTATGTAGAAAGTATGAGTCACATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAGCAATATTTTCATTGATGAAGCAGAAGATTTAGACGAAGAGTAA


Promoter Sequence:
>Vu_20375::LG5:22092474-22094474(+)
TAACAGAAAGAATCAAATTGAACTGTTTTAAATAATAGGAACACTAAATTGAAAAGAAAATAAAAAACAAAATTAAAACCAACATAAAAAAATTGCTTATCGAAAGAATTACAATTGTCAAACTTTTCAACTTTGGTTATTAAAAAAACTGATGTGGAATATCTTTTCTAATTAATTTTTCATAACAATCAGACTTTGAATCTAGTTATAACATAATTGCATTCCCTTTTCTGTTTATCTTTCTTCTTTGTATCAATCTCTTGCATAATATTTTGTCTGCCCACTATTATAATGTGGTTGATGCGCTATTAGGATTAAAAATAAACCTATCAACGTGAATATTATCCAAAATCCTTCCTATTTTGATGAAGCACTTGCATATATAGGATAGAAATATGCATATTGGTAATGCAACATTTTTTAAATTCAATGTGTGGATAAGCATATTTAAACATTCGTTCCATTTTCATACTCTTCTCAATACTCATCCAAATTAAAACTTTAAATTGTTAAAATATTTATAATTTATTAAATAACCTAAAAATTATATATATTATTTCTCTTGTTCTTTAATTTTGTAGTTTTTCTTTTTATTTTTTTCAATATACATTTTTTCTCTTCTATTTTAATAGTTTGGCTTATTTTACATACATAAAGTTCACTTAAGATATTTTTTCTATTATCACATTACATTATTTTCAAATGGGTACATTATCAATTTCATTAAATCAAAATAATTTGCATGAGCATTGACTGTTTATAGTACTTATATGGACCTAACTTTCATACGCCTAGGATTTATATGTCTGTCCCATTTTTAGGTTTCTTTAGATGATTAATTATCCTAATCTTTTATTATCTAAGTGATAATACTTCTTAAGGCAATATTGTCTGATGTGTCGTCTGATGTTGTGTCGTCCGATGTTGACATCTTTGGCCCCGATACAAGTATGGATTTTAATTAGTATCATGCATTCTTTAGAAATATAAATTTGAAATGTGTATTCATTTTGTAATAGAAATAATACGTATATTTAAATACAAAAATACGTGCAAATATGAAGCTAATTAAGTGTCTAAGAAATATAATATTTTGAGAAACATTTTTTTATTATTGGTTAAGTTATTTTTCAAACCATCTTTTCCAGTCAACCCAACTTTAGGGTCAACTTTCATGAGCATTACAAAAGAAATATGTTTCATCATCAGCATTACAAAATACGGTGAAATTATAAAAACATAGTTTTAAAATATATAAATATATTTTAAGGATATAAAAAGTTTAATTTTTTTCTAAAACATATGAACAAAGATAATTAAAACAAGTAAACAGTGGTGTAAAGTCTAGAAGCATGAATAAGAAAATGGAGCAGAAACTACGTACCTTTGGTGTTTCTGCTTAGGTTCTTGCTACACACCATTTTGTCCAATACCAGCCACTTGTTGGGTATGTTATCATCATAAGCATTAGTCAAACAAAAAATTTGTCACAACAACCATTTTAAAAAAGCCTGGTGAAGTGACAAGGTAGAAGAGTTCAAAATCCAGCTCATAATAAAAAGTATAATGATCAAGAAACATAATATACTAACAGATAAAGATTATATATATATGCAAGTGGTATAATATTGTTACCTAATAAAATTAATTTTTAACAAATTCGATAGATATGTGTATGGAAACCATTGTTTTAACTCCTGCAAAACTTATATGTTCTTGTGCTGTAAGAAAAACTATTTAACTCTTGCTTTTGTTTTTATTGAATCTACAAGTTTCGTTAGCAATTTTTTTTCCTTTGTCTAAAATGTGGAAGATGTCATGTGATGTGGAAGAAAAATATAGTTTTCTTCCTTTTTCAGTAATATATAGAAAAAGATGGTAGCAAGTGACATTGCTTATTGGGTAGATTAAGAAACCATTGGTCAAACACTCTGCCATCAACACAGTTTTGCCTTCGGATATCATCTCTTCATCTCTGCGGTTTGCATTTCAGACAACTA


Gene Sequence:
>Vu_20375(+)
ATGGCCGAATCATATCTCTTCAGCGTGGCAGAGTCACTCATAGCAAAACTTGCTTCTCGTACTTTTCAAGAAGCTTCTCGATTGGTCGGTTTATACGACGATCTTCAAGACCTTACAAACACTCTCTCTTTAGTCAAGGACGTTTTGTTAGATGCTCAGCAAAAGCAGGAACACAACCATGAGCTCCGTCGATGGCTTTCTCAACTCAAAACTGTCTTCTCCGATGCCGAAGATGTTTTGGATGAATTTGAGTGCCAAACACTGCGAAAGAAAGTGGTCAAAGCTCATGGTAGCACCAAAGACAAGGTAAGTCACTTCTTCTCAAGTTCTAATCCACTTGTTTTTCGTTACAAAATGGCTCGACAAATTAAAGATATCAACAACAGACTAGACAAGGTTGCAGATAATAAGCGTAAGTTTAGTCTTCAAATGAGTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCTCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTGATGATGATGATGATGATACAAGTCTCTCTGTTATCCCCATTGTGGGGATTGGAGGCTTGGGAAAAACTACACTTGCAAAGTTTGTGTTCAATGATAAGAAGATCCAGGAGTGCTTTCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAACAACTGATTATCAAAATCATCAATTCCGTGAATGATTCAGAATCTGATCATGCTCCTATTTACCAAATGAATTTGAACATGTTAGATCTGGAACAACTGCAAAATCAACTCAAAATCAAACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGTATGAGTTGAGGAATTTAATCCAAGTAAGTGCAGCAGGAAGTAAAATCCTTGTGACTACACGAAGTCATTCAATTGCTTCCATGATGGGCACAATTCCCTCTCATATTTTAGGAGGTCTTTCTGAGGAGGATTCATTGTCTGTGTTAGTCAAATGGGCATTTAAAGAAGGAGAAGAGGAAAAATATCCTCACTTAGTAAATATTGGGAGAGAAATTGTGAAAAAATGCGGAGGGGTTCCTTTGGCAGTGAGAACATTAGGCAGTTTACTATTCTCAAAATTTGAGGCCAATGAATGGGAATATGTGAGTCAAAATGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAATTGAGTTATGATCTCATGCCCTCCTATTTGAGGCAATGTTTTGCATTGTTTTCCATTTACCCAAAAGATTATCAATATGATAGTTATGAAATAATTTGGCTTTGGGGGGCACTTGGACTCATCGCATTACCAAAAACGGATAGAACACGTGAAGATGTAGCCAATCAGTATTTGCATGAACTTCTGTCAAGATCCTTTCTTCAAGATTTTCAAAACTTCGGCACTTTGTATAACTTCAGAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCTATGGATGAGTGTCTACATATCAATTCCAACATTCAAAATATTCCTGATAATATTCGGCATCTGTCTTTTGCAGAAAGTGGTTTGATTAGCAATTTAATCACCAAAAAATCAGCGGCTGTGAGAACCGTCATGTTTCCAAGTGGGGTAGCAGCTGGCAACTGTAAAGCTATACTAAAGACTTGTCTGGAAAAGTTCAAATGCTTACGTGTTTTGAATTTAAGTGGTGCAACATTTGAGACTTTGCCTCGTAAAATTGGCAAGTTGAAACATCTGAGATATCTGAACATTGGCAAAAATCCCAACATTAAGAGACTCCCCGACTCTATCTGCAAGCTCCAAAGTTTGCAAGTGTTGAGCCTTGCAGGATGCGTGGAACTGGAAGCATTGCCCAAAAGATTAAAAAAACTTATCAGTCTCTATTGTTTTGAGTTTTCCACAGAGCAAACTGTTTTGCCTATGAATGAAATTGCCAACTTGGGGTGGCTTGAAGTCTTGAGTATTGGATCATGCCATAATGTGGAATCCATATTTGGAGGGATGAAATTCCCTACTCTTAAAACATTGTTCGTTTATGACTGTCAGAGTCTTAAGTCTCTGCTGCTGGAGGGTAAAAATTTTCCTCAATTGAAAACATTGATTATTGATGGATGCAGTAATTTGGATTTGGAACTGTGGAAGGGAGATCATGAAGAACAAAGCCCCAAGCTGAAGTTAAAATTTGTTCTATTTTCAACTTTGTCACAACTGGTGACCTTACCTAAATGGTTTCAGGAAGCTGCCAACTCCTTACAGTGTTTGCTTGTTTACGATTGCCACAATTTTGAATCATTTCCAGACTGGCTGCCAGTTCTGACTGATTTGAAAACTCTTGAAATAAGGAATTGTCCAAAGTTGGTATCGCTCCCGGATAACATCCATCTCTTCAGCGCCCTTGAAAGTTTGAGGATTGAAGGTTGTGCAGCTGACTTATGTAGAAAGTATGAGTCACATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAGCAATATTTTCATTGATGAAGCAGAAGATTTAGACGAAGAGTAA