Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20277	LG5	20711814	20712352	protein RADIALIS-like 3	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	20711874	upstream_gene_variant
G/C	20712020	upstream_gene_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20277.1

MASSSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTASSDQEEKRLRNLNLQ*

CDS Sequence:
>Vu_20277.1

Promoter Sequence:
>Vu_20277::LG5:20712352-20714352(-)

AACTTTATGTTATCCCCCACCCAACAAATAAGTGGGCCATATATCTGACGATTTTTTCCTCGTGTATCATGGCGTACAAATTAGCCTTTGGAGAACAAGGTTCTGGCTTGTCATCTTGAAATGCAGAGTTATAATCATTTATAGAAACTAGGTTAATGATGGCTTCTGTCACCTTATTGTCTTGCTCTTGCCCAAGTCCAACATATATGAGTTAAAAAGATATGATTGTGGATGTTCTTTACTTAACAATTGTAAAAGCCATACCAGTGAAAAGACCTGCAAGACTCAACCCACGTGCTAATCCAGAACGGGTAAAACTCCAAAGTGTTCTTTGATGAGCCTTGGCCTATAACCCAGAAGCTAAAGGTTTATTATCCCTACACTACAACTGGCCTTAAGGGTATGTGAGCAATTGCTGAAGCTATATAGTTTGCTTGATCGCATTGGCCTAAAGTAACAGCAAAAGACAAAGAACTGTATCGTGAAAGATATTTCGTATAAGAACAATGGAAGAATTATAAAATTATTTTGTTGGTATTTGATGCAGTGATATAATCTATGAAACTGTTTTTGACATAAGAATAGTGGAAGAATTATAAAATTATAGTTTATTTCCGGGTCAAACGGCTTCCCACTTGCCGGTTCCTCTTAATGTTAATAATTTGAATTATTTTACCTCTTGCACGTTACATGATTTTCAGACTGCTTATAATGGATGTTGCATATAATGACATGCTCATCTGTTTCCTACATGTGACAATGCCCCTTACCAAATCAAGAGACATAAATGCTTAAGCTGCAACTTATGCAATCGTTGTTTAGAAAATTACAGTTTTTAATTTCATAGCCGGCATTTAAATTTTGGCCATGTAACTGAAATCAAGCAAAATATTGGTCATAAACCATGAATCAAGTAAAGAAAAAGAGGGACCCCAGCAGCTAAAAAGAGTGAGTTATTTAATAAGTTTTCCTGGGAGTAAAAAAAAAGTAGGAAAAACAGCAATAATTGTAGAACACAAGTGGCCAAGCAGGAGTGTTGGAATGTTGTTCAGGACAAAGTACAGATACAAAAGATCATCACCAAGAAACATGAAAACACAAGAGCTTTTCATATGCAATCGAACTGTTCTGAACAAGATATTGTGGTTGTTTTGTTTGTGGCATGCGTGGAAGTTTTTACACCGATTAATTATCATGCACACAGACTTACATAGTCCTCACATACTCACATGCAAGCCGTTGGATAAGACTTGGCCCTACTTTAACTTTTTTTCAAGCGGTCCAAATTATGCACATATCTCACATAGTTTGTTTCCCTTTTGTACCCGTTTTGGATTCAGTGGATTTGAACCTGGACCCACCCAAGACCCTGCGAGTAAGAGAATAAAATAAAGATAGGCATTAGCTGACCTATCAGATAGAGTGTTCTTCTGCATACGTTCTTATGTTTTCAACCACAACCCAACTTTCTTGTCTAAAACAACCACCCTCCTTGTGTCCCTTTACTAAACTCTTCATATCTGCCAAACCAAAACTACTTACAAATCAGTTTTCATCGTTGGACTAATTTGTGATAAAGTTGCAGGAATATATAAATTTTTATAATATGTATTTCTTCTCTGAAGTAGGTGAAGGGTAAGAGGAAACATAAATTAAAAAAAAAAGTTATAAAAAGCTCTTGGCTAGTCTTATCAATACATCCACTGGTTTTTACTGTGTGAAGATACTGATTCTCCAATTTCTTGGGCCAGCTGAATTCCATGGTTACTAAGAAGACAAATCATAATAATTCTACTTCATTTCGGCAAGATTTTGATGCCAACTGGCACTACCCCACCTAATACCTTCCATTGTTCTTATAAAAGGAGCACACATTGCAACCTCTCAACATATCAGCTCTTCCTTGAGTCTGATCATTACACACACTCTTCAGCCTTCACAAAACTTTTGTTCTTCCTTAGACCATTTCACATCTTCGTTTCTTCTCCTTCGTGAAAGAA

Gene Sequence:

>Vu_20277(-)

ATGGCATCAAGTTCAATGTCAGCCTCAGGCTCATGGAGTGTCAAGGACAACAAGGCCTTTGAGAAGGCTCTAGCTGTTTACGACAAGGACACCCCTGACCGTTGGTACAATGTTGCCCATGCTGTTGGTGGCAAAACTCCAGAGGAAGTGAAGAGACACTATGAACTCCTTGTCCAGGATGTTAAACACATTGAGTCAGGACGAGTGCCATTCCCAAATTACAAGAAAACTGCATCCTCTGATCAGGAGGAGAAAAGGTACCATTCCCTTTCATTACAAATACTTTAATTACTGTGTGATTAGTTCATCATCTAATAAATCAACAAAAACTTCTTTTACTTACTTAATAAAAACTTGTGAGAAAAAGAAAACAGTGATTGCACAACAATAGAGGGCAAAGAATAATCTCTCAATCAAGAAAGAAGAAGTTTATATGCAATATTTAAAATGATATCCACCAACCAACAACTTTTTAGATCTTCTTGACTCTAATATTTTATTTTCCTTTTGACAGACTGAGGAATTTGAACCTCCAGTGA