Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20269 LG5 20555726 20557266 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 20555905 missense_variant p.Ser356Leu
G/A 20555946 splice_region_variant&synonymous_variant p.Gly342Gly
T/A 20556109 stop_gained p.Arg325*
A/T 20556112 missense_variant p.Ser324Thr
A/C 20556187 splice_region_variant&intron_variant
C/T 20556189 downstream_gene_variant
A/T 20556192 downstream_gene_variant
G/T 20556222 downstream_gene_variant
T/A 20556285 downstream_gene_variant
C/G 20556289 downstream_gene_variant
G/T 20556354 downstream_gene_variant
T/G 20556467 missense_variant p.Gln267Pro
A/T 20556563 missense_variant p.Leu235Gln
G/T 20556570 missense_variant p.Gln233Lys
G/A 20556901 synonymous_variant p.Phe122Phe
G/A 20556940 synonymous_variant p.Arg109Arg
G/A 20556997 synonymous_variant p.Asp90Asp
T/A 20557253 missense_variant p.Asp5Val
C/T 20557254 missense_variant p.Asp5Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20269.1
MREEDSNWFSRWEEELPPPEELMPLSQTLITPDLAMAFDIRNPHTSTNPNTAQQHQHQQQPPQQQQQQQQPSNPSSLPNPQQPTSNDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQLAAAAQYHRQVSHFGSPPNGHFENPFISRPNLQRMGGGGGGGGPVHNHHPVSGYVEDMESANAASGGLNWYFCVRVIVNEFGVANWGYWSLEFKSADSKAPAVMILLVAAIVMQLPVILGDNQWFPGVEASSDSLGIGLWLDEIWRITEWMDLCWYSWKDWQKMPIWYLCLQVVVNTGYTL*


CDS Sequence:
>Vu_20269.1
ATGAGGGAAGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAGCTTCCTCCGCCAGAGGAACTCATGCCCCTATCCCAAACCCTAATCACGCCCGATCTAGCCATGGCTTTCGACATCAGAAACCCCCACACCTCCACCAACCCCAACACCGCCCAACAGCATCAACACCAACAGCAGCCACCGCAACAACAACAACAACAGCAACAACCTTCCAACCCTTCATCGCTCCCCAACCCCCAGCAACCCACCTCCAACGACTTTGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCTCGAACCCTCAAGCGCCCCCGCCTTGTGTGGACCCCGCAGCTCCATAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCCGAGAAAACGTGGCCAGCCACTTGCAGAAGTACCGTCTCTATCTCAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGACCCGGAGGCGGTGCCTCCGGCGCCGTCGCGGACCCCGCCACTGACCACCTCTTCGCCAGCTCCCCGGTGCCGGCGCATTTCCTGCACCCCGCGACGAGGCCTAATTCGGATCATTTCCTTCCGTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGCTGGCCGCGGCGGCCCAGTACCATAGGCAGGTGAGCCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCCTTCATTTCTAGGCCGAATCTTCAGAGGATGGGTGGGGGTGGAGGTGGAGGTGGTCCTGTGCATAACCACCACCCTGTGAGTGGCTATGTGGAGGATATGGAATCTGCTAATGCTGCCTCAGGAGGTCTTAATTGGTATTTTTGTGTTAGGGTTATTGTTAATGAGTTTGGTGTTGCTAATTGGGGGTATTGGAGTCTAGAGTTTAAGTCTGCAGATTCAAAAGCTCCAGCAGTCATGATACTTCTGGTGGCGGCAATAGTAATGCAACTGCCAGTAATTCTGGGAGACAATCAGTGGTTTCCTGGTGTTGAGGCTTCCTCTGATTCTCTGGGAATTGGTCTCTGGCTGGATGAAATCTGGAGGATCACTGAATGGATGGATTTGTGTTGGTATTCATGGAAAGATTGGCAAAAGATGCCAATTTGGTATTTGTGTCTGCAGGTGGTAGTAAACACGGGTTACACTTTGTAG


Promoter Sequence:
>Vu_20269::LG5:20557266-20559266(-)
AATTTAAGATTCTTTACCATTTGGTAGTTTCTTAGGCTGTCAAATTTTCATGTGAATACTAAACAGTCTAGCAATAACACGACGCCACAAACTTTTGTCAGCTCGTTACTTTTCTGTCCTACTGTAAAATACTATTTAACTAACAAAAGTTATACTTTTATTTGTCACATATCTGTAAGTAAAAAAATCCGCCGTAAAGTTGTTCCGTTTTTTTTCATTTTACATCATTGTAATATTTTATTTTTACAAACCCAGAAATCACCATAAAAAGGATATATAAATAAATATATATATATAACAGTATGTGAAAATGTTCGTTTTTGTATTTTGTTGGATTTGATCTCCGAGGTCCAATAATATTGTTCCAATAAAATAGGATGCGTATTTTTTATTTAAATGTTAAAGATTGAGAAATTTAGGTATTGTTGAGACGAAGTTATTGAAGTGGGAAATTTTATATTAGGGAAAGACGAAGAGGAGATATGAAGACAGGGTGTTCGATATTTCTAATTGTAGACATGTAAATAGTTTTGGATTGGTGGGTATTTTTGATGAATATTCCTGGTAGAGAAAAGAGGGAGAAACAAGTGTAGCACCAGAAGAGAAGAATAGTATAGGAGGGCATTGTGTGATAAATGCCAAAACATTAATGATAGAAGAGATACACCTGTCATGATATTGGTATTTTGTTGAAACATCAAACATGGGTATCACATGGGGGTACCCTTATCATATTACTTTGATTCAATTGGTCAGTCAGTACTGTTGGCAATACTGCACGAGGAAACATGCCTTTCTAGGGACAATAATTGCACCATACCCTTTTACTAAGAATAGGTAGACAAAACCCCCCAACCCTTCATGCCTCTTGTGTTTCCCCCTCACCTTCTTTTGTGTAGTGCTGCAAATGCAATGCAACACACTACAATCTATGACTCACTCAGTGACTCATCATGAGTGATTAGGGTATAAATCCATTTCTGCAACAACACAGGTATCCCACTTCCAACAGTTCCCTTCTGGGCATTTCATGCTTTCTGTTCCAACTCCAAACTAAACATACTTTCTCACTTTTCTTTCATTATTAATTTCCTCCAGGGCCCTAGCACTAACCTTTTCCAATTATTTTATATACCTCATCCTCTTTTTCTAATCCATCTAAATAAATAAATAAATAAATAATTAATTAATTAATTAAATAACCTCACCCGTCAATTTCCCTAACCTTGTGTTGTTTCTGCATATATCCCTATTCCCTAATTCATTCACGTTCAGTCAAATCGAATTTTAACTTTGAAAGCGGAGACATCGTGAGAGGCAAACCAACACCAGCTCAACTTATTCCCTATCTACCAAACAGGAAAGAAATTCCGAAAAACCCAACAATCTTAATCTTTGCATCTCTCTCTCTCTCTCCACATTCCTTCCCAGATCAAAAATCTTTCCCATACCATACCCGTACATTTCATTCCCACTTCTCCCCCACCTCTCTCCCCACTCCCTGCATTCCACGCGCCACTCTCTCCCGCCCCAACCTTCAAACCCCTCATTTCTTTTTAAAACCTTTCACACCTGCCAAATAAAGGACACTTTTTTTAAAATATCACATTTAAGAATTGCACCGTGGACAAGGGAGGCGCGTTTGCCCCACGCCCCGGTGGCGAAAAAAAAGTAAGAAAAATACTGGAGCGATCTTGTAACACTCACTCTCAAGTAAGAAGACCCCCAAATCCCGGAAAAATAAAAATCATAAGGAAAAGCATCAACAACAGTGCCCACAATAAAAAGCTGAAAAGAGAGAGAGAAAAACAAGATCCACCTCGAACCTCTCTCCACACTCCACCCTTCGTCACCACCACCACCACTCTCACACCCTCTAATCGAATTCTTCTCCCAAAACGAATCAAATCCCAATCTTCGCCATCCCATCCACACCCTTTCCTTAAACCGTTAAATTTCCAAACAACAAACAAGAACAAGAATTTCCTCCAATTCGAGAA


Gene Sequence:
>Vu_20269(-)
ATGAGGGAAGAGGATTCCAATTGGTTTTCGCGATGGGAAGAGGAGCTTCCTCCGCCAGAGGAACTCATGCCCCTATCCCAAACCCTAATCACGCCCGATCTAGCCATGGCTTTCGACATCAGAAACCCCCACACCTCCACCAACCCCAACACCGCCCAACAGCATCAACACCAACAGCAGCCACCGCAACAACAACAACAACAGCAACAACCTTCCAACCCTTCATCGCTCCCCAACCCCCAGCAACCCACCTCCAACGACTTTGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCTCGAACCCTCAAGCGCCCCCGCCTTGTGTGGACCCCGCAGCTCCATAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCCGAGAAAACGTGGCCAGCCACTTGCAGAAGTACCGTCTCTATCTCAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGACCCGGAGGCGGTGCCTCCGGCGCCGTCGCGGACCCCGCCACTGACCACCTCTTCGCCAGCTCCCCGGTGCCGGCGCATTTCCTGCACCCCGCGACGAGGCCTAATTCGGATCATTTCCTTCCGTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGCTGGCCGCGGCGGCCCAGTACCATAGGCAGGTGAGCCATTTCGGGTCGCCGCCGAACGGGCACTTCGAGAACCCCTTCATTTCTAGGCCGAATCTTCAGAGGATGGGTGGGGGTGGAGGTGGAGGTGGTCCTGTGCATAACCACCACCCTGTGAGTGGCTATGTGGAGGATATGGAATCTGCTAATGCTGCCTCAGGAGGTAGAAAGGTTCTTACTCTGTTTCCAACTGGGGATGATTGATTGAATGAATATTCATCATATATGATGACGATGATGATCATGATGACGATGGTGATGGTAATAGTACGGTACTCTTTGGTCTTTTGGTATGTGTCACTGTGTCCTTGTTGTATTCTGAATGTGAAGTTTATGTTTGGTTAAGGTCTTAATTGGTATTTTTGTGTTAGGGTTATTGTTAATGAGTTTGGTGTTGCTAATTGGGGGTATTGGAGTCTAGAGTTTAAGTCTGCAGATTCAAAAGCTCCAGCAGTCATGATACTTCTGGTGGGTATGGTGTAATTAATTAATAACCTTGTGGGTACCAATATCCGCCGCTGCTTGGGTTAACTTCTCCGTCAGCTTCAGGTGACTGACATTCATCATGATGTCACTGTTGAGCGGCAATAGTAATGCAACTGCCAGTAATTCTGGGAGACAATCAGTGGTTTCCTGGTGTTGAGGCTTCCTCTGATTCTCTGGGAATTGGTCTCTGGCTGGATGAAATCTGGAGGATCACTGAATGGATGGATTTGTGTTGGTATTCATGGAAAGATTGGCAAAAGATGCCAATTTGGTATTTGTGTCTGCAGGTGGTAGTAAACACGGGTTACACTTTGTAG