Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20267 LG5 20531365 20534803 PREDICTED: bZIP transcription factor 17-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   hyperosmotic salinity response, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, regulation of transcription, DNA-templated, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, regulation of transcription, DNA-templated, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, positive regulation of transcription, DNA-templated, hyperosmotic salinity response, positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   endoplasmic reticulum membrane, endoplasmic reticulum membrane, endoplasmic reticulum membrane, nucleus
Cellular Component   located in   nucleus, nucleus, endoplasmic reticulum
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/A 20531552 3_prime_UTR_variant
T/A 20531645 3_prime_UTR_variant
T/A 20531674 3_prime_UTR_variant
A/G 20531819 synonymous_variant p.Asp755Asp
T/G 20532003 missense_variant p.Asn694Thr
T/A 20532684 downstream_gene_variant
A/T 20532685 downstream_gene_variant
C/A 20532700 downstream_gene_variant
A/T 20532823 missense_variant p.Phe628Ile
C/T 20532824 stop_gained p.Trp627*
C/T 20532992 synonymous_variant p.Leu571Leu
C/G 20533007 missense_variant p.Lys566Asn
C/A 20533012 stop_gained p.Glu565*
G/T 20533135 missense_variant p.Pro524Thr
C/T 20533136 synonymous_variant p.Glu523Glu
C/T 20533259 synonymous_variant p.Gly482Gly
A/T 20533424 synonymous_variant p.Gly427Gly
C/T 20533474 missense_variant p.Val411Ile
A/T 20533679 synonymous_variant p.Pro342Pro
A/C 20534007 missense_variant p.Leu233Arg
T/C 20534064 missense_variant p.His214Arg
T/A 20534083 missense_variant p.Arg208Trp
C/T 20534410 missense_variant p.Val99Ile
A/G 20534624 synonymous_variant p.Phe27Phe
T/G 20534753 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20267.1
MTESMHAVEPSPEAAVLPVSDPLFDEFSTEFGSLPLLSMDSLFNSDTLPFTSDLEFGMDFDDNNGEFEITFDDLDEICIPSDVEDFLLPDACDPNNTSVLPPIDESSAKNSDSPRSDTSVVSGDRSFGVSRFFNSQASDSVSEGNSCKEGSHDAADVRVSNISSPESEFCDREESSGGPVSSQGSGNGGSGVYEAVNSPSPDSGSFERDITSSHEHAVMDKGVKLEEISGCDLKRKKVSCEGSATKHRRFSSSSVDTKTEKQTPSDVNAIDDDDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMNSIIADLSSKISYMVAENATLRQQVGAGVMCAPPPPAPGIYPHPPMAHMTYPWMPCAPYVVKPQGSHVPLVPIPRLKPQQPTSAPKGKKSDSKKSEGKTKKVASISFLGLFFFIMLFGGLVPLVDFKFGGLVDNVPDTGMSSFVSDRVYGQGGGKVWSVNGPRNGSERDEEVGFSNDRFSVKDKMNHERGRHLGEERGEREGPDNFGRQGNASEPLVASLYVPRNDKMVKIDGNLIIHSIMASEKAMASQTADAKEKRETGLAIPKDWDSALAIPEVGRHPNVYRVPAEQRKALASGSTKALKDHMKSSATDGKMQQWFREGLAGPMLSSGMCTEVFQFDVSPSPGAIVPATSVSNVSTEKRQNATSVKKTRNRRTLRGLPDSLNGSSLNITEELVKNMDKNHLHGNESSMVVSVLVDPKEAGDGDVDGMMRPKSLSRIFVVVLIDSVKYVTYSCGLPRASPHLVTAYV*


CDS Sequence:
>Vu_20267.1
ATGACCGAGTCAATGCACGCCGTGGAACCGTCGCCGGAGGCGGCGGTGCTGCCGGTCTCCGATCCCTTGTTCGACGAGTTTTCCACCGAGTTTGGATCCCTCCCCCTCCTGTCCATGGACTCGCTCTTCAACTCCGACACGCTTCCCTTCACCTCAGATCTCGAATTCGGCATGGATTTTGATGACAACAATGGAGAGTTCGAAATCACCTTCGACGATCTTGACGAAATCTGCATTCCTTCCGACGTCGAGGATTTCCTTCTCCCTGACGCATGTGACCCCAATAATACCTCCGTTTTGCCGCCGATTGACGAGTCTTCCGCGAAGAATTCCGATTCTCCGCGTTCAGACACGTCTGTAGTTTCTGGAGATCGGAGCTTCGGCGTTTCAAGGTTTTTCAATTCGCAAGCGTCGGATTCTGTTTCTGAGGGTAATTCGTGCAAAGAGGGTTCGCATGACGCGGCTGATGTTAGGGTTTCGAATATTTCATCGCCGGAGTCTGAATTTTGCGACCGGGAGGAGTCTTCTGGTGGACCGGTTTCCTCTCAGGGTTCAGGGAACGGTGGATCGGGTGTATATGAGGCTGTGAACTCGCCCTCGCCTGATTCTGGATCTTTCGAGAGGGACATAACATCGTCTCATGAGCATGCTGTTATGGACAAGGGTGTGAAATTGGAGGAAATTTCTGGGTGTGATCTGAAGAGGAAGAAAGTGAGTTGTGAAGGAAGTGCTACCAAGCACAGAAGGTTCTCTTCCTCCTCGGTGGACACTAAGACAGAGAAACAGACTCCATCTGATGTGAATGCAATTGATGACGATGATGAGAAAAGGAAGGCAAGGTTGATGAGGAATAGGGAAAGTGCACAGCTTTCTAGGCAGAGGAAGAAGCATTACGTGGAGGAGCTTGAGGAGAAAGTGAGATCAATGAATTCCATCATTGCTGATCTGAGTAGCAAGATTTCATACATGGTGGCTGAGAATGCTACACTTAGACAGCAAGTGGGTGCTGGTGTGATGTGTGCTCCTCCACCACCTGCTCCTGGGATTTACCCTCATCCTCCAATGGCACACATGACTTATCCTTGGATGCCTTGTGCTCCGTATGTTGTCAAGCCTCAGGGATCTCATGTTCCTTTGGTACCCATTCCCAGGTTGAAGCCTCAGCAACCCACTTCAGCACCCAAAGGTAAAAAGTCCGACAGTAAGAAGAGTGAGGGGAAAACTAAGAAGGTTGCTAGTATTAGTTTCTTGGGTTTGTTTTTCTTTATCATGCTTTTTGGTGGGCTTGTTCCGCTTGTGGATTTTAAGTTTGGCGGTTTAGTGGACAATGTTCCTGATACTGGTATGTCTAGCTTTGTTAGTGATAGGGTATATGGTCAAGGTGGGGGTAAGGTTTGGTCTGTGAACGGTCCTAGGAATGGGTCTGAAAGAGATGAAGAAGTAGGGTTTTCTAATGATAGGTTTAGTGTTAAAGACAAAATGAATCATGAGAGAGGCCGGCATTTAGGAGAAGAAAGGGGTGAACGGGAGGGCCCTGATAATTTTGGTCGCCAGGGAAATGCCAGCGAGCCTCTTGTTGCTTCTTTGTATGTTCCTAGGAATGATAAGATGGTGAAGATTGATGGAAACTTAATTATCCATTCCATAATGGCTAGTGAAAAAGCTATGGCATCTCAAACTGCCGATGCAAAGGAGAAGAGAGAAACAGGTTTGGCCATTCCTAAGGATTGGGATTCTGCATTGGCTATACCTGAAGTTGGAAGACATCCAAATGTATATAGGGTTCCTGCTGAACAGAGGAAGGCTCTTGCCTCTGGTTCAACCAAAGCTTTAAAGGACCATATGAAGTCCTCTGCAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTTGCAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTTCTCCAAGTCCTGGAGCTATAGTTCCTGCAACATCAGTATCTAATGTGTCTACCGAAAAGCGTCAGAATGCTACCTCGGTGAAAAAGACCAGGAATAGAAGAACCCTTCGTGGGCTTCCAGATTCTCTTAATGGATCGAGTCTGAACATAACTGAAGAGCTTGTAAAAAACATGGATAAAAACCACCTCCATGGTAATGAATCTTCCATGGTGGTTTCAGTTCTTGTTGATCCTAAAGAGGCTGGCGATGGTGATGTCGATGGCATGATGAGACCGAAGTCACTCTCTCGGATCTTCGTGGTTGTGCTAATTGATAGTGTCAAGTATGTCACTTACTCTTGCGGTCTGCCTCGTGCTTCTCCCCATTTGGTGACTGCTTATGTATGA


Promoter Sequence:
>Vu_20267::LG5:20534803-20536803(-)
TTCTGGAGGAATGCTTACAAAACATATAATATAACAATATGTAAAAAGATGATTTTTTTAAGGTTAATGCTTGATGTGCTTCATTAAAACTTTGCTCAACAAAACTATACTTAGGGATAAAATTTAAACTATGAAAAAAGAGCACACATATCCTCATATGTAACATCGAATAGTACATCTTTAAATGAGTAACATTTCATGTCCTCAATATTAGTTTACCACTAAGGTATTCAAGGTTGTATGCTCCATTTTGGATCCATCATTTATACAACAAAGACCATTTCAACCAGGTGATAACTTTCCTTCAAGTTCATCTTCTCACTTCTCTGAGCTTCTACCATATAAGGTTGTCTTTGTGAAAAACTTGTTTCTTTACTCACGTGTTGTACCTCCATGCAACTCTTTGTTTTGTTGCTTCAATTTGATCATTGATTTATGAAGAGACTTGACGTTTTATAGAGTTACTCCAAAAATTGTTCAAAGTCTTTTTTAATGAATGGTCAATCATATTTGGTGACAACATAGTTGGGTAAACTGTGTCTGTATACAACATTTTCCAAATAAACTTTTGAACTTGTTATATAGTGTTAGTTGATAAAGGTTCTACCTTTATCCATTTAGTAAAATAATCGATTACCACTTTTTCGAGGGATGTTGGATGGTGACATTGAGTAGTTGCAAAACTATTCACCTTCAGCCTTTAAACCAGAGTGCTAATAAGCTTATTACCATCATTGGAACTTGCAACATTTATTTAGGCATGTGTTATAAAAGGAAAAGGAAAAAAACTATTTTAACACTATTATTCACAAAATTTGAATAAAATGTTATATAATAATAAAATTTTAACGTAAAAAAAAGATAGAGTGTTAAGATAACACTCCTTAAAGACATTGCAAATTTTTGACCATTAATTCAAGATAGCACGAGTGAGACGATTGTTAACAATGATGGATTCTCTTTGTCATCCATCTATAATGAGTCATCACATCACTTAAGGATTATATAAATATGGAGATAAGATAAAATTTTGATTATCTAAATCTCACTTTGAATGTCAAATATTCTTACTGGAATTGGACGAATAATCTTCGAGGTGAAGTATGAGACTTTTAAAAGTCAAACTATTACTTTTTGGTGAAAAAACTTTGAGTTTTTTCTCAAAATAAAAAGAAAAATCTACTACAAATTAAGAAAGTTTAAATATGAAAAATGAGAAATATTGAATGTGAGACTTTATATAAGAATTCTATGTAAAAATTCAATCATTCCTTGTAATAAATATTGTATTTATAAACTTTCTACGTAAAAAATAAACACATATATTAAACAAATTCGTTACTTAATTATTATTAAAATATTATATAATCAATCATTACATTAAAATATCTTAAAAATATAACATGATAATTAGTTATTCTATCATAAAATATTAAATAGTAAATTATTTCATTATAATCTATTAGAGATATAACAAAATTAAATTATACTATCATAAAATATTAAATAATAAGTTATTATATAAACATATTTTAGAAATAAATAATATATTATTATACTATAAGATATCATCAACAGGCTTTATCATCTAAAATAAATTTCCTTCACTAAAAGCCAAATCCTTAATTAAAAATGCCTCCATCAACTTGATTAATAGTATGAATGTAAATTAATTAAAGAATCAGATATGTACATGAGTAGTGAGTTGCTGACATTATAATTTTAGGTTCAACTTTCGAAAAGAAAAGTCGTTTAAAACATGACACCTTCCGTCGTGGTCGTTGAAAGCAACAGAACGTAGCGGAAACGCAATTCTTGCTCACAGGATTTTGTGTCCTACTACTTTCTTCCCATTATCCCTTCTCAGATTTCTGGACACGCTTTCTTGTCCTTTTTTCTCCCTCATAATAATAAACTCAAAAAAATTAATGCGTGGCACATAGAGTGACTGACACACAAGAATTCTGTAGAACTATTTATCGTATTCGGTAGACAGTTTC


Gene Sequence:
>Vu_20267(-)
ATAGCGCGTGACTCACGCTCTCGTCTTCTAATAAGGAGCGAAACCCCAACATTTCTTAAAACCCAAACTTTCCTTCTTCCTTCTCGGAAACCCTCACCCATGACCGAGTCAATGCACGCCGTGGAACCGTCGCCGGAGGCGGCGGTGCTGCCGGTCTCCGATCCCTTGTTCGACGAGTTTTCCACCGAGTTTGGATCCCTCCCCCTCCTGTCCATGGACTCGCTCTTCAACTCCGACACGCTTCCCTTCACCTCAGATCTCGAATTCGGCATGGATTTTGATGACAACAATGGAGAGTTCGAAATCACCTTCGACGATCTTGACGAAATCTGCATTCCTTCCGACGTCGAGGATTTCCTTCTCCCTGACGCATGTGACCCCAATAATACCTCCGTTTTGCCGCCGATTGACGAGTCTTCCGCGAAGAATTCCGATTCTCCGCGTTCAGACACGTCTGTAGTTTCTGGAGATCGGAGCTTCGGCGTTTCAAGGTTTTTCAATTCGCAAGCGTCGGATTCTGTTTCTGAGGGTAATTCGTGCAAAGAGGGTTCGCATGACGCGGCTGATGTTAGGGTTTCGAATATTTCATCGCCGGAGTCTGAATTTTGCGACCGGGAGGAGTCTTCTGGTGGACCGGTTTCCTCTCAGGGTTCAGGGAACGGTGGATCGGGTGTATATGAGGCTGTGAACTCGCCCTCGCCTGATTCTGGATCTTTCGAGAGGGACATAACATCGTCTCATGAGCATGCTGTTATGGACAAGGGTGTGAAATTGGAGGAAATTTCTGGGTGTGATCTGAAGAGGAAGAAAGTGAGTTGTGAAGGAAGTGCTACCAAGCACAGAAGGTTCTCTTCCTCCTCGGTGGACACTAAGACAGAGAAACAGACTCCATCTGATGTGAATGCAATTGATGACGATGATGAGAAAAGGAAGGCAAGGTTGATGAGGAATAGGGAAAGTGCACAGCTTTCTAGGCAGAGGAAGAAGCATTACGTGGAGGAGCTTGAGGAGAAAGTGAGATCAATGAATTCCATCATTGCTGATCTGAGTAGCAAGATTTCATACATGGTGGCTGAGAATGCTACACTTAGACAGCAAGTGGGTGCTGGTGTGATGTGTGCTCCTCCACCACCTGCTCCTGGGATTTACCCTCATCCTCCAATGGCACACATGACTTATCCTTGGATGCCTTGTGCTCCGTATGTTGTCAAGCCTCAGGGATCTCATGTTCCTTTGGTACCCATTCCCAGGTTGAAGCCTCAGCAACCCACTTCAGCACCCAAAGGTAAAAAGTCCGACAGTAAGAAGAGTGAGGGGAAAACTAAGAAGGTTGCTAGTATTAGTTTCTTGGGTTTGTTTTTCTTTATCATGCTTTTTGGTGGGCTTGTTCCGCTTGTGGATTTTAAGTTTGGCGGTTTAGTGGACAATGTTCCTGATACTGGTATGTCTAGCTTTGTTAGTGATAGGGTATATGGTCAAGGTGGGGGTAAGGTTTGGTCTGTGAACGGTCCTAGGAATGGGTCTGAAAGAGATGAAGAAGTAGGGTTTTCTAATGATAGGTTTAGTGTTAAAGACAAAATGAATCATGAGAGAGGCCGGCATTTAGGAGAAGAAAGGGGTGAACGGGAGGGCCCTGATAATTTTGGTCGCCAGGGAAATGCCAGCGAGCCTCTTGTTGCTTCTTTGTATGTTCCTAGGAATGATAAGATGGTGAAGATTGATGGAAACTTAATTATCCATTCCATAATGGCTAGTGAAAAAGCTATGGCATCTCAAACTGCCGATGCAAAGGAGAAGAGAGAAACAGGTTTGGCCATTCCTAAGGATTGGGATTCTGCATTGGCTATACCTGAAGTTGGAAGACATCCAAATGTATATAGGGTTCCTGCTGAACAGAGGAAGGCTCTTGCCTCTGGTTCAACCAAAGCTTTAAAGGACCATATGAAGTCCTCTGCAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTTGCAGGTGATTATCCAATATTGTGGCTTTCATTGTTAATTTTATTATGTATAGGCTGCTTGATAGGAAATAATATGATACATCACTCTTCTAATTTATGTCATGTCTTGGTTATTTTCTAATCTTATTCTGTGAATATTCAAGCACATTAGGCTTAAGGTTTCTAATTTTGGTGATGATTAAGTCTTGAGGATGCTATCTTTGCTTACATAACATGTTTTTCTTTTCTCTGGTTGTTCCTTGGTTTTCCCTGATAAGAAATCATGATACTGTTTTGTTACTATAAATTAATGATGAAATATTGTTGCAACAAATTCTGATGCCTTTCCGAATTGATTAGGTGTTTTCTCCTTTGTTTCCTTCGGAGTCTCAAACTAGTGTGATGAGATTGGTTTTAAAAATATTTTTCCAGTACGTTTCGCATGTTTATTGTTGTAGCTGTAGAATAGGTGTTCTTAGGCCATGATTTACACTCATTATCAACGGCATCTCGGCTAAATATAAGAGCTGAAAACAGTGTCTTCGAGATTTCCACCTTTCAATCATTGCAAATTAAAGGATCTGTCGACCTATTTTGTTTCTTCATAACATGGAAAGTATGCTGAGTTTTCTGGTTTTCTGATACAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTTCTCCAAGTCCTGGAGCTATAGTTCCTGCAACATCAGTATCTAATGTGTCTACCGAAAAGCGTCAGAATGCTACCTCGGTGAAAAAGACCAGGAATAGAAGAACCCTTCGTGGGCTTCCAGATTCTCTTAATGGATCGAGTCTGAACATAACTGAAGAGCTTGTAAAAAACATGGATAAAAACCACCTCCATGGTAATGAATCTTCCATGGTGGTTTCAGTTCTTGTTGATCCTAAAGAGGCTGGCGATGGTGATGTCGATGGCATGATGAGACCGAAGTCACTCTCTCGGATCTTCGTGGTTGTGCTAATTGATAGTGTCAAGTATGTCACTTACTCTTGCGGTCTGCCTCGTGCTTCTCCCCATTTGGTGACTGCTTATGTATGAGAATCCATCTTTCCTTCGGTGAAGTGTTCCGATAGAGCTGAACCATCTAACCTGAGTTCTAGTTTTATAACAAAGGATATGTGGGAACTGGGAGGGAAGGAAGGAAAGAAACTCTGCTCCAGTTTTGTACATAATAACATATTTAAAGTAGCAGGCTTAAAAATGTAGCTGAGAATACAGAGCTGGGCTTCAATGGGGGTTGTTCACCAGCCGTGTAAGGTTGAGACCTTTCTTAGAAACTGAATAATATATGCCCACTTTTTAATTTATGAGCGGATCCCTTGTCACGCATCACTGAATTTTTAGTTCGAATGTGTGTTTGAGACAAAGCATGTAAACTCGATTTTGGATAATGATAATTTTATGAAATTGTTTTTATGAT