Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20189 LG5 19380321 19382327 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/G 19380364 stop_lost p.Ter344Tyrext*?
C/A 19380369 missense_variant p.Asp343Tyr
C/G 19380376 missense_variant p.Glu340Asp
A/G 19380439 synonymous_variant p.Ser319Ser
A/G 19380484 synonymous_variant p.Gly304Gly
T/C 19380500 missense_variant p.Tyr299Cys
T/A 19380685 intron_variant
C/A 19380921 intron_variant
T/C 19380925 intron_variant
T/A 19380928 intron_variant
A/G 19380935 intron_variant
C/A 19380959 intron_variant
T/C 19381120 intron_variant
A/G 19381252 intron_variant
T/C 19381263 intron_variant
T/C 19381296 intron_variant
A/T 19381371 missense_variant p.Phe271Ile
A/G 19381379 missense_variant p.Val268Ala
T/C 19381839 intron_variant
A/G 19381882 intron_variant
T/C 19381983 synonymous_variant p.Lys115Lys
G/A 19382219 missense_variant p.His37Tyr
C/T 19382285 missense_variant p.Gly15Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20189.1
MDSSSWYFNNVAGEGFNGVMSFIPSFHVRSQAPPLGHGKGVLGPNLEMGLQMLSPSMVQQQESRGKKRTSGEGVTNKNLSLKREEEEEANGSISGKNGFTKLCARGHWRPAEDDKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPKINKKCFCEEEEERLLTAHKMYGSKWAMIARLFPGRTDNAVKNHWHVMMSRRQREREQSSGVYRRRKPLINEPLPKGLNLTLSNNATSDESTISNTIDESASTCTNLSLTPSSAKFTPFGLLHQPGESREDVWLKKYFGGWKGSEGMVGKRVMGVEQCSFSDANSEVSASESGVTNRSNLSISQEKESDKINNISFIDFLGVGAT*


CDS Sequence:
>Vu_20189.1
ATGGATTCTTCTTCATGGTACTTCAATAATGTTGCTGGTGAAGGTTTCAATGGAGTCATGAGTTTCATCCCTTCTTTTCACGTGCGTTCTCAAGCTCCGCCCTTGGGTCACGGCAAGGGGGTTTTGGGTCCAAACCTTGAGATGGGTCTTCAGATGTTGAGCCCTTCCATGGTTCAGCAGCAGGAGAGTAGGGGGAAAAAGAGAACCAGTGGTGAAGGGGTTACGAACAAGAACCTGTCTTTGAAACGTGAGGAAGAAGAAGAAGCTAACGGCTCCATTTCAGGGAAAAACGGGTTCACCAAGCTTTGTGCCAGAGGTCACTGGAGGCCAGCAGAAGATGACAAACTGAAGGAGCTGGTGGCCCAATATGGTCCCCAAAACTGGAACCTGATCGCTGAACATTTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGATGGTTTAACCAGTTGGATCCTAAGATCAACAAAAAGTGTTTCTGTGAGGAGGAAGAAGAAAGGCTTTTGACTGCTCATAAAATGTATGGCAGCAAATGGGCCATGATTGCAAGACTATTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATGATGTCTAGGAGGCAGAGGGAGAGGGAGCAGTCTAGTGGCGTGTATAGAAGGAGAAAACCTCTTATCAATGAACCTCTTCCAAAGGGTTTGAATCTGACACTGTCTAACAATGCAACCAGTGATGAGTCAACCATCTCAAACACCATTGATGAATCTGCCTCAACTTGCACCAACCTCTCCCTAACTCCCTCTTCAGCCAAGTTCACTCCTTTTGGTCTCTTACACCAACCAGGAGAATCAAGAGAGGATGTGTGGTTGAAGAAGTATTTTGGTGGTTGGAAAGGGTCAGAAGGTATGGTGGGAAAAAGGGTAATGGGAGTGGAGCAGTGTAGTTTTTCAGATGCAAACTCAGAAGTATCAGCATCTGAGTCAGGTGTCACCAATAGGTCTAATCTCTCAATTTCTCAAGAGAAAGAGAGTGATAAGATTAACAACATCTCATTCATTGATTTTCTTGGAGTAGGAGCTACTTAG


Promoter Sequence:
>Vu_20189::LG5:19382327-19384327(-)
TATTAGGAGAAACTATGAGATCATAAGATTCTACATGAAATTTTAGGCTTCTTACCTACTACACTACCTTGTGTTAGTTGAAAAGTAACCGAGACAGTGGTAAATAAAAAGGAATTAAAAAGTTTCAATTTCAAATGTGAGTGTTTTTCTTTATAACTAATTATCATATTAAAGAGAGAAATTTCAGTTTTACTTGCATCGTATACTTATTGCTTGACATGTGAGTGTTTGATAGACAAATATTATTGCCTGGCCTTCTCAGTGAAAAGTTTCCAACCCTACCAAAACTTTACACACGTATTAAATATAAATCACATCTTGGCATCTAATCTTTACTTTGGGTCATTCTAAGGCACCAAAATAGGGATTGACACCATATATTAATTATTATACTATTGAAACGCCATTCACAAACTAATGTAATGATCACTTTCTATTAAGTGCCGTAGATGGTGACCCTTTTATAGTTTCTAGCATTACATTTTGAAGGTTATTGAATCTAACTATTTCCATACTGACCCTATTTCTTGTGGTGAGAATAAATAATAAGCTTCACTACTTCTGTGATTCATGCATGGTTGCTCCCAGCATACTAGTTCGAATGTAGTTAGCATTCACTGTTAAATTAATAATGCATGCTCATGTAATATATAGTAGGAATAAATCATAGGTTTAAAATGGAACAGTGGCTGCAAGTTTTGTAAGGTATATATACTGATACATCATACATGCAACTGGGGAAGCGTTGATAAAGGAGTTTCAAAAGATGAAAAACAAAGTAAAAGGATACATGATTCATGAATGTGGCAATATATTAAGTTTTGAAAATCGTATTCTTTTGAATAAATTAAGCTTGGTTTGTACTATAACTGAGAAAAAAACACATAACAGAGGAAGAAGTAGTGAAAACCCTATTCATTTTAATAAACCAAGCCCTGTTTTGTATGACCGACAAAAACCTTGGTTTGAAGTTTGAACCCACAATTCATATTGGTTTCACGGGCTCCACTATAGCGATTAAATTATTATGATTTCAACCGGATGTGTTGAGAAAAAAAACTGCAATAACGTAATCATCGAATGAATCAGATTTTGCCATAATCAAAATCTTAAATACAGATAAGAGGTAACTACCATGATAACGATTGTAATTTGCAGTGAGCTAGCAACCTAGGCAATTAATTAGTAGAAAAATACGGAAACAACTAATTGGGGGAGATGGATGATTTTAATATGGTTGCTGTCTGAAATTTCTGTTCTTTTGAAAAAAAAAAAGAAACAAAGAAAAGCAAAAGGTATCAGAAAGAGACAAAAGAGAGTGTGGGGTTTATCTTTTTAGCCCAAAGTCCAAGAGTGTGTGCAGAGAGTGCAGAGGAAGGAAACAACATCACCCAAAACAAAACATTAAACATTGCGTTTTCCTTAGTTTATTGACAAGCCACACGAGCGGTTCTCGAACTGCATGCACTGCACACATCATGGACTTTTCTAGAGAGAGAAATTGAAAACCCCCACACACTAACTCGCTCACTCACCACACTATTTAGTTGTTGCTTTCTCACTGTGAGATCAGTCTCAAAATAAGAACCCTGATCTCATTTCACTTCCTCTCTTTCTTCACACAATGTAGAGAGAGAAACGTCAAAATATATTCACCAGAATCGCGTGGGCTCACACATTCTCAACCTTTTCTTATTTCTTCCTTCTCTCTCATGTTTCAAAAATTCTCTTCTTTAAAAACGATGTTGTTTTAGCTCTTTCTTCTCATTCTTGTAACCCAACCCCACTCTGTCTTCTCTCTCCATGTCCCTCTCTTTTTGTGGGACTTAGTCTCACCTCAGTCATGGATTTGGAACGATATTGTGTTAGTAACGGTTTTCCTTCCATATATTCTCGATGATTCTGGCATTGCGATAGTTCATAGGGGAGAGAGAAACCCGTTTTTGTGAACCCTTTTGCTTGTCTTTTGCTTTTGTTTTCTTTTTTCGGTTTTTGTCTCC


Gene Sequence:
>Vu_20189(-)
ATGGATTCTTCTTCATGGTACTTCAATAATGTTGCTGGTGAAGGTTTCAATGGAGTCATGAGTTTCATCCCTTCTTTTCACGTGCGTTCTCAAGCTCCGCCCTTGGGTCACGGCAAGGGGGTTTTGGGTCCAAACCTTGAGATGGGTCTTCAGATGTTGAGCCCTTCCATGGTTCAGCAGCAGGAGAGTAGGGGGAAAAAGAGAACCAGTGGTGAAGGGGTTACGAACAAGAACCTGTCTTTGAAACGTGAGGAAGAAGAAGAAGCTAACGGCTCCATTTCAGGGAAAAACGGGTTCACCAAGCTTTGTGCCAGAGGTCACTGGAGGCCAGCAGAAGATGACAAACTGAAGGAGCTGGTGGCCCAATATGGTCCCCAAAACTGGAACCTGATCGCTGAACATTTAGAAGGAAGATCAGGTGATATTATTAGCTAAAATCTACTCCTGATTCGTTTCAAAGTTTGTGTTTTTAGTCATGTTTCTGAGGTATGTGTCTTTGTATGGATTATGGAAGGAGTGTGATGAAACTTGCATGGATTTTCTTTTATCTTTGGGATTGCAGGAAAAAGTTGTAGATTGAGATGGTTTAACCAGTTGGATCCTAAGATCAACAAAAAGTGTTTCTGTGAGGAGGAAGAAGAAAGGCTTTTGACTGCTCATAAAATGTATGGCAGCAAATGGGCCATGATTGCAAGACTATTTCCTGGAAGAACAGATAATGCAGTGAAGAACCATTGGCATGTGATGATGTCTAGGAGGCAGAGGGAGAGGGAGCAGTCTAGTGGCGTGTATAGAAGGAGAAAACCTCTTATCAATGAACCTCTTCCAAAGGGTTTGAATCTGACACTGTCTAACAATGCAACCAGTGATGAGTCAACCATCTCAAACACCATTGATGAATCTGCCTCAACTTGCACCAACCTCTCCCTAACTCCCTCTTCAGCCAAGTTCACTCCTTTTGGTCTCTTACACCAACCAGGTACACCATAAAATAGTTTAAATATTTTATTTGTTAGAAAAAAAGAAATTTAACACTGACCTTTTTTACAACATTTCTAACATACAGCATATAACATATGTGTCCTTTTCTATTTAGTTCTTTGTTTCACTTGTTCATTATGCTGTGAAAAATTTTAAAAAAAATAACAAGGATGTTTGGAAAAAATCTTATAAAAAAAAATAATCTGTTCCCTTTATTGTATGGAAAATTTCCTTCCAGATAAACTATATTTCCACGTATTTATTGAGTTTTTTTGTGATTTCAAGACCATTAAGAAAGATGATCTTAGGTTAAATATCATTGTTTATTTTAAGAAACTCCTTGTACAATAGACACGTGATACAATCACATGTAAACGGAAAGATTATGAGAAACAAGGATAATAAAACAATTAAAAAGATTATTTGAAAAAAACAATATCGCCATCCCGTACACGACTTCCATCATAAATTATTTTGAATTTTTATTTATAAGTAAGCTGTGTATGTATGCAATAAGGAGTTTTACATTTTGTATTGAAATCATCCATGAAATCCTGAAATTGAATGGTGATTAGAGATATAATTTTCATGAAAACACGTGGTTCGAAACGCGCTTTATATATTTGATTATTTAATGAAAAGTGATCTATTTTGGAGAAAGAAGAGGAAAATAGAGAACAAACGTAAAGAGCCCTTTTTGGTGTAATGCATTTATGAATAGTTTTGTATGATGGGTGGTACAAGTTCCCTATTTACCTTATCTTTTATTACTATGTGATTTCAGGAGAATCAAGAGAGGATGTGTGGTTGAAGAAGTATTTTGGTGGTTGGAAAGGGTCAGAAGGTATGGTGGGAAAAAGGGTAATGGGAGTGGAGCAGTGTAGTTTTTCAGATGCAAACTCAGAAGTATCAGCATCTGAGTCAGGTGTCACCAATAGGTCTAATCTCTCAATTTCTCAAGAGAAAGAGAGTGATAAGATTAACAACATCTCATTCATTGATTTTCTTGGAGTAGGAGCTACTTAG