Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20113 LG5 18377291 18380071 PREDICTED: zinc finger protein 3-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 18377307 missense_variant p.Ser6Asn
G/A 18377312 missense_variant p.Gly8Ser
T/A 18377315 missense_variant p.Tyr9Asn
T/G 18377365 synonymous_variant p.Gly25Gly
G/A 18377380 splice_region_variant&synonymous_variant p.Leu30Leu
C/T 18377387 splice_region_variant&intron_variant
A/G 18377395 intron_variant
A/T 18377397 intron_variant
C/T 18377398 intron_variant
G/A 18377461 intron_variant
A/C 18377477 intron_variant
T/C 18377528 intron_variant
G/A 18377530 intron_variant
A/G 18377533 intron_variant
G/A 18377551 intron_variant
G/A 18377562 intron_variant
C/T 18377571 intron_variant
A/G 18377573 intron_variant
G/T 18377583 intron_variant
A/T 18377590 intron_variant
T/C 18377591 intron_variant
G/T 18377594 intron_variant
A/T 18377597 intron_variant
T/A 18377600 intron_variant
A/G 18377610 intron_variant
A/G 18377694 intron_variant
G/A 18377827 intron_variant
C/G 18377902 intron_variant
T/*,A 18377971 intron_variant
T/G 18378074 intron_variant
T/C 18378082 intron_variant
C/A 18378087 intron_variant
A/T 18378095 intron_variant
T/C 18378107 intron_variant
A/G 18378109 intron_variant
A/G 18378112 intron_variant
T/A 18378382 intron_variant
G/T 18378423 intron_variant
G/*,A 18378430 intron_variant
T/A 18378435 intron_variant
T/C 18378440 intron_variant
A/C 18378447 intron_variant
C/A 18378501 intron_variant
A/T 18378798 intron_variant
A/C 18379018 intron_variant
G/A 18379114 intron_variant
A/G 18379195 intron_variant
A/T 18379297 stop_gained p.Lys50*
A/T 18379367 missense_variant p.Lys73Ile
A/G 18379750 missense_variant p.Ile201Val
T/A 18379771 missense_variant p.Leu208Ile
G/C,A 18379798 missense_variant p.Val217Ile
G/T 18379852 missense_variant p.Asp235Tyr
C/T 18379941 synonymous_variant p.Tyr264Tyr
G/A 18379981 missense_variant p.Glu278Lys
A/C 18379992 missense_variant p.Glu281Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20113.1
MMMSLSTGYVGHGGDRLMVHEEDDGGSAGLGSSISVPSQDILHKPSIEEQKNEELRTMKEKVDKSKQDQASNSKSHMRLDYVKLFGNEPVCESKVFDFFNLMDTGNSSSSRENYIKKRDEHNNEVKSSKTKTFSCNFCKKEFSSSQALGGHQNAHKQERALAKGNQRIEVGAFGHLHFLYYPYLTNSFYGSYSRTLGVRMESMIHKPSYRSSSLGFRFDHHSSLDGLRKKGLNEMMNMESDATVRKQGDNLTIRQNTHFLGKSSTEVEIKSNSAMSPLNIVNFDSQSKQEGTSNPNSSYGIDLSLKL*


CDS Sequence:
>Vu_20113.1
ATGATGATGAGCTTGAGCACTGGTTACGTTGGCCATGGTGGCGATAGGTTGATGGTGCACGAGGAAGATGATGGTGGTTCTGCAGGATTGGGTTCTAGTATCTCTGTCCCTTCACAAGATATTCTCCACAAACCAAGTATTGAAGAACAAAAGAATGAAGAACTAAGAACAATGAAGGAGAAGGTTGACAAATCTAAACAAGATCAAGCTTCCAATTCAAAATCCCATATGAGATTGGATTATGTTAAACTTTTCGGTAATGAACCAGTTTGTGAGTCGAAGGTGTTTGATTTTTTCAATCTGATGGACACAGGGAACTCATCTTCTTCTAGGGAGAATTACATCAAAAAGAGAGATGAGCACAACAATGAAGTGAAATCATCAAAGACTAAGACTTTTTCTTGCAATTTTTGTAAGAAGGAGTTTTCTTCTTCACAAGCTTTGGGAGGACATCAAAATGCCCATAAGCAAGAACGTGCTCTTGCAAAGGGTAATCAAAGGATTGAAGTTGGTGCTTTTGGACATCTTCATTTTCTCTATTATCCTTATCTCACAAACTCCTTTTATGGATCTTATAGTAGAACACTTGGGGTTCGAATGGAATCTATGATTCATAAGCCTTCTTACCGTTCATCCTCTCTAGGGTTTAGGTTTGATCATCATTCTTCTCTTGATGGATTGAGAAAGAAAGGTTTGAATGAAATGATGAATATGGAAAGTGACGCAACTGTGAGAAAACAAGGTGATAATCTTACTATTAGACAAAACACCCATTTTCTTGGTAAATCTTCTACAGAGGTTGAAATCAAATCAAACTCAGCTATGTCTCCATTGAATATTGTGAACTTTGATAGTCAATCCAAACAAGAAGGAACCTCTAATCCTAATTCTTCGTATGGGATTGATTTATCACTTAAGCTTTAG


Promoter Sequence:
>Vu_20113::LG5:18375291-18377291(+)
TATTTTAATAGATAATTAATTTCAAATATTGAAATAACTATATTAACATAACCATTTATGGTTAAATGATAGTGTAAAAACATTTAATCTGTCAATACATAGACTGTGTATTCTAAAATATATAATGTAAGAAAAACACTTTTGGTATGTCTATAAATCTAGTTAAAAATGAATTTCACACCCTCTCACTTATTTTCTCATAAGCTCTCATTATTTCTTAACACTTAATGTATAACAACATTCTTCAAGTTCAAGCATTATTCACAATCACAATCTAATTCATTCATTATTCAAGATTTTACAAACTCCTACCTTCGTAACTTTTCATTTTTTTCAATGTTACAAAATTATGTGTTTCGAAATATATAAACATCGACCAATATGACAAGAACGTTATTGAAATCAAAATACAAGAATGTTGATGGGTCGAAATAAAAAATTTAAAAGTTAGTCCTTGAAAATATTAAGTCCTTTATTGAAAATTAACTTCCACAAGTATGACAGTAATAATGTAATTAAAATAAATAAGATGAGTAAGTTTTGGGATCTAAAAATTATTTATTAGAGTAACTGAAATTTTGTATGAGAAGAATTTACTAATGTTAAAGAAGAAAGTGACTGAGTCTTTGTAATTAGAAGCTACAAATTAGAGTGGTAAGATTGTGAAACCATATATTAGTCATTAGAAGAATATATTATGGGTGAGAGTTGTTTAACTAATTAAAGCTAAATAAAAAAAAAAATTCAAAAAGAAAAGAATAATTTTATGATGAAGACCCATTTTAGTTTTAAGATATATAGTGTTAATGGTGAATAAAACACAGGGAACTATATATTAGATAATCAAGATGTTATTAGAAACGAAAATTTACTTCTAAAGATTCAAGAGAATAAGACATGTTCAACAAACTAGCAACATAAACAAATGAAAGCATAATGGTCTAATAGAACACGTTAAACACCTTTAGTTGTCCTTATTTATGTAGAGTTTTCCCAGTTTGATCCTCGTTCTTTTAAAATTTCCAATTGAGTCATAAATAGTACTAATTTGAATCAATTGGGCTCCTGCCGTTAATTTGGCTTAACGAGGTTAAGTTTTTGCTGAGATTGAAGGTTGATGTGTCAATTTTTTTACACGTGGCATACTGAAAAATAAATACGTGGAATTTGGTGATTAAAAAATATGAAAGGAATGTGCTTGTGAGATTGTGAACCTTGCACAGACTAGGTGGTGTTGTTCTTCTTCGTTGCGGTTGCACGAAGGTGGACATTGATGGAGAAAGGAGATCTTACAATTTGGATTTTCACTTGATGGTTGTGAGACGCAGCGATGAAGATGATTATGACTGCTGGTCCGATTTTGCCCAATGTTCATTAGGGTTTTTCAATCAACTAATCACTGTGCTGATTTTTAAAAGAAAGAAACATCCAATGTGTCTCCTCTGCTACAAATTGAAATCAACGTCTCTTTTTCTTAAAAGAAAATGAATGCTAGCCAAAAGAAATCAACGTTTTCTCTCCCGGCCAAATGAATAAACGCCTTTCTTCTTTCTAAAAGCAAAATGAAAATGAATGCCCCCTGTGCACCGCTTCTCTCCAACAAAGAGAATTGAAATGCTTTTCTCTTCCAAAATTAAAATCATCGTGCACCACTTTTCTTTTGAATTACCGCTTCATTCTCAAAAGAAAAGAAAAGATGTGCTTCTCCAATTTTTTTCCTTCGCCGTAACGTTGTGTGCATTTTTTTTAAATTGAAAATGATAATGTTGCTAAGTGGGTGAATCTAGAGAAGTTTCTTCTGCAATGGAGAAGTTTCTGCATCTTTGCGATTTCCAACTCTCTAGGTTTTTGGATTTGCAGGTGAATCTGGGCTTGATGATGAACGCAAGAATGAAGCTGCGCGATGAAGATGATTGTGGCTGCTGGTCCGATTTCGGCCAATCTTCATTAGGGTTTTTCTGTGATTGGGTTTTCCTTTGTAGGTTGAAGAAGAAAATAGA


Gene Sequence:
>Vu_20113(+)
ATGATGATGAGCTTGAGCACTGGTTACGTTGGCCATGGTGGCGATAGGTTGATGGTGCACGAGGAAGATGATGGTGGTTCTGCAGGATTGGGTTCTCTGGTTCTAGACGGGAAGATGATTTTTTTTTAATTTTTTAATCAAAATGTTAAAATGTTTTTAAATTCCACGTTGAGATCTCTGAATGCCAGGTTTAAAAAATTTGCCACGTCAACTTCAAACCCCAACAAAAACTTAACTTCGTTAAGCCAAATTTAACGGTAGGGGCCCAATTGATTCAAATCAACACTATTTAGGACTCAATTGGAAATTTTAAAAGAACAAGGATCGAACTGGGAAAACTCTACATAAATAGGGACAACTAAAGGTGTTTAACCAATAGAACAAGTAGCATATGAACTAAAATAAGAAGAAAAACAAAATAAAAGATAAAAGACTGACACACCATTTCAGAAGGTTTACCAAACTCAAGATAAGTTAATGATGCCACCACTTGACCTTTAGGCTCAAGATAAGACTAAGGAAAAAAAATCATAAGAGAACTCTCACGAAGCTAGTCAGATATAATTATTTTCAAGAAAAATATTCAATCTTTTTATAAGTCTAAGAGACCTCCTTTTATAGGTGATGAAATAAGTTGTCGTGCCACGACAACCTCCTCCTCCTCCTCCTCTTTTTCTTTCTCTTTCTTCTCTTCTTCATTTCATCCATCTTCATTTAGTTTATAATACACATTTCGTCAAATTTTATGAAAAAATCGATGTCTATTTTACTTATAAAAATACCTATAAATTTACTACATTTTTTAAAATATAATTATTAGTAGATTTTCAAAAAATTAAATAATTGTCGAAATTGTTGAATGATTTTATCACCACATGATCAAAGTTAAAGCAAAAACTTTGTCGTCCATTTTACCAATGAAATTTATTGACAAAAATATCTATTGATAATAAAAGCTAAATAAATTTTATCACGAATTCATTATCGGTAGAAATATTCATCGGTAATTACAATATTAAAATTTGGGATAAAATTTGTTGATAAATTCTATTTTACCAATAGATATTTTTCTATCAATAAATATTATTTTTTTTATAATATAATATTTTTTGGGTAGTGTAATAAACTATTGGTTAAAAGTTATTATAATTTTTAAACCCGTTAGGAAATTATGGAATTTGTTAGAACGATATCAAACATTAATGAAGCCCAAAATCACTTCGCATAATTACCTATAAACCTCTTGAATGTTCAAGTAATTTACTCCAACATAAGTAAGTAACTTTTAAGTTACCAGGTTTTGCTTTGAGATAAAATTTGAACAACATAGAAGTAGGATGGTATATTATTCAAGTGATTAACCATGTTCTTGCCCCCAGTAGGAATTGAATTATTTAACTAATTATTTTCCATGTTAGACTCTGTAATAAAAACAATTTAGAAAAATGTTGAGCATTCATGAACCACAATTAATTCCAGAATTCTTTTTTCTATAATTGATTTGTCCAAAAGAGAAACGTCCCACTAAGTACATTTGAACAAGTAATTTTCAAGTTACAAATTTGCTACTTGTTTGACTTTAAATTTGAGTTACATATAAGCTATTTATATAACTAGTATAGTGATTATGGAATTACTTGAAGTATTTGAGTATTAAGATACAATGGATAGTAAAGTCTTTTTAGGAATATTTGTATATGCATGAATTGGACAAAACTAGTTCATACATCTTCAAAAATTTTGGTAAAATAATAACACATGATATCTCATTTATCCTTCATTGAAGATTTTGTACTAACATTAATCTTTAAATACATTACACTGGTAGTATCTTCTCTTTATTCAATCACTACCACAAACTCAAAAGAGTTTTATCCTTCTATTAGTGTTATGGCATCATCATCATTATCATTATCACCACACAATTTGGAAGAATGTTCTTTTGAAGGTTCTAGTATCTCTGTCCCTTCACAAGATATTCTCCACAAACCAAGTATTGAAGAACAAAAGAATGAAGAACTAAGAACAATGAAGGAGAAGGTTGACAAATCTAAACAAGATCAAGCTTCCAATTCAAAATCCCATATGAGATTGGATTATGTTAAACTTTTCGGTAATGAACCAGTTTGTGAGTCGAAGGTGTTTGATTTTTTCAATCTGATGGACACAGGGAACTCATCTTCTTCTAGGGAGAATTACATCAAAAAGAGAGATGAGCACAACAATGAAGTGAAATCATCAAAGACTAAGACTTTTTCTTGCAATTTTTGTAAGAAGGAGTTTTCTTCTTCACAAGCTTTGGGAGGACATCAAAATGCCCATAAGCAAGAACGTGCTCTTGCAAAGGGTAATCAAAGGATTGAAGTTGGTGCTTTTGGACATCTTCATTTTCTCTATTATCCTTATCTCACAAACTCCTTTTATGGATCTTATAGTAGAACACTTGGGGTTCGAATGGAATCTATGATTCATAAGCCTTCTTACCGTTCATCCTCTCTAGGGTTTAGGTTTGATCATCATTCTTCTCTTGATGGATTGAGAAAGAAAGGTTTGAATGAAATGATGAATATGGAAAGTGACGCAACTGTGAGAAAACAAGGTGATAATCTTACTATTAGACAAAACACCCATTTTCTTGGTAAATCTTCTACAGAGGTTGAAATCAAATCAAACTCAGCTATGTCTCCATTGAATATTGTGAACTTTGATAGTCAATCCAAACAAGAAGGAACCTCTAATCCTAATTCTTCGTATGGGATTGATTTATCACTTAAGCTTTAG