Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20096 LG5 18185220 18186281 PREDICTED: GATA transcription factor 9-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 18185496 synonymous_variant p.Ile179Ile
T/G 18185587 missense_variant p.Gln149Pro
A/G 18185661 synonymous_variant p.Pro124Pro
C/T 18185673 synonymous_variant p.Arg120Arg
G/A 18185706 synonymous_variant p.Ala109Ala
C/A 18185879 stop_gained p.Glu52*
T/C 18185968 intron_variant
T/A 18186011 intron_variant
T/C 18186034 intron_variant
T/C 18186108 intron_variant
A/T 18186146 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20096.1
MNMNMCQSVSVTTECHQEQVFAPSCSSSLDDLFSAQNTEVDVELEWLSEFVEDCFSSPPSFVLGGGGAKSNTSIISISTGGSSSSSSKGCSSGTLKRAQENECPLQNFAVPGKARSKRKRLSAPRTKDPLSIWSQHLNPQNEALSSDPQLLKQAYWLADSELMMMPKPKEEQEVRKVVIGECEVEGSSGQQAMARRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSVYSSISSDL*


CDS Sequence:
>Vu_20096.1
ATGAACATGAATATGTGCCAAAGTGTATCAGTTACCACTGAATGCCACCAAGAGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGAAGTGGATGTCGAGTTGGAGTGGCTTTCGGAGTTTGTGGAGGACTGCTTTTCGAGTCCCCCAAGTTTTGTGTTGGGAGGCGGTGGGGCTAAGAGTAATACAAGCATAATAAGCATAAGCACAGGCGGCAGCAGCAGCAGCAGCAGCAAGGGTTGTTCTTCAGGCACATTGAAGAGAGCCCAAGAGAATGAGTGTCCTTTGCAGAATTTTGCCGTGCCTGGGAAGGCGAGGAGCAAAAGGAAAAGGCTTTCGGCCCCTAGAACGAAGGACCCTTTGAGCATATGGTCACAGCATTTGAACCCCCAAAACGAAGCCTTGAGTTCTGACCCTCAACTCCTGAAACAGGCTTATTGGTTGGCCGACAGTGAACTGATGATGATGCCAAAGCCAAAGGAGGAGCAAGAAGTGAGGAAAGTGGTGATTGGGGAGTGTGAGGTTGAAGGTAGCAGTGGTCAACAAGCAATGGCAAGGAGATGCAGCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTACTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGCGGATGTCTGTTTACTCTTCCATTTCTTCTGACCTTTAG


Promoter Sequence:
>Vu_20096::LG5:18186281-18188281(-)
CAAATATTCACTATAGTTTGTGTGTGAAGCCATGACCTTTCTTTCTTTTATTTACTTCTCTAAGTTACTTTTTAGTTATATATATACATTATTGACAATAATATGTAGTAGAGAAAAGTGTGAAAGTATAGTTTCATGAAATTATAAATTAAAGTGAAATTAAATATATAGTTGTTGTATATTGAAATTGAAAAGCTTAAACCTAAAAGTTACAAGTAGAAAATTGTAAAAAGAGATGAACTGTTCAAATATTGATGGATGGGTAGTTATATAAAGTTGGACACATGTACATGTAAAATAAGAGTGACAAGTGGAACAAGCACCGCTTGTAGGTTTTCAAATATTGAAACTTTGACAGCTAAATCTAACATCTTTTTAAACAAATATATTAAAAATTTATATAACAATAATTATAAAAATCAAAATGTTTTCTTGATATGGTACAACAAATAAATTATTATAACATGACATGTTTTATTGATGTGATCTTCGGAACTCATTCATAAGCATCTAACATATTTAGATAAAAAAGTCATTAGTAATGTTAATCAAGATAAAAAAAATTCACACACTTTAATTTTTTATTTATCAAATTTCTTTCTATAAAAAACAATATTATACATTTCTTTCAATAAGCCAACATTATTGTGAATCAAAGAACTTATAATTAGATAACCTTTTTTTTTTAAATAAAACATTTAGCATTTATTTTTAAAAATACCCCAAATACAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACAACCACTTATATGAACTGAGCATTTAAATTATTCTCCTTGATGACTTTTTCTCAAAACTTTTAAGTTATGTGCGCTCCTAAACCCTTAAAGTCAAAATAATCAGTTATTTTGAATTTGAATTTGAAATTCTTGACATAAATAACTTTCTCAAAAAAAGAGTAAAGAGAAAATGGTTATATAAAAAAAAACTTCCACCAATTAATTTACACACTTTACAAGATACTTTTTTTTTTACAATATTACGTATCAATTTTTATCCAAATATAATGTTGTACATTCACTGTACTGAGTCACATTAACAAAATTTCATAAAGTGGATAAATCATTAGATTCTTAGTAACACTATAATCTAAGATTTAATTTGTAATACATGTAGAAAACTTTTTTTAATGGATTTGAACCAGAAGAGTAAAATAATAAATTTGAAGTTTTAATGTGTAATTTTACTGTAAGAGCAGTGATTTGAACTTAAATGTTGTTGGTTAGATTATAATATTTGCATTGAGAAAGCTTACCTTCCCTGGGTGTGATAGGACCACAAAATTGAAGGCAGGAAAACTTGGGAAAAGTTAAAAGATTTTGGAAGAATCTGAATGTTAAAACATTTAAAATGAATCTGAAAGTGGCAGAAGCAGTCTGTGCCCTGCTCTCTTGGACTCTTCCAATGCATCTTTTGAGATGTTTAGCAAAGCAAAAGGGAAAGCAGAGCATCTAATACTTACTTCTCTCTGCAAACCTAACCGCACTCTTAATATTTTTACCCCAAAAACAAATTACCAACTTTATTTTCCTTCATGCAGAAAAAAAAAACATGGCGGTTTATTCTATTTGCACGCCATAGGAAGAAAAAAACACAAGAGGAAAATAAGAAAGGTAAGCAACGAATATACAGATAACTAAATGATGTTTTGGGGTAAACAAGGTTAATGTGAGATGAGAGATGGTGATTGGTGTTTTTGTCTGCATGAGATAGTGATGTGAGCTTTCACAGTGATAATTTTGATTTGTTTTCTTTTTGCTTTTAACCTTTTATCTGCCGACAAAAAACCAAGGCCCATATTGATAAAGGGTACCCTCAGACAAACGTTCAGTTCTAACTTGGAACACCAATTTTGGCTCTCTCTCTCTCTCTCTCTCTCTATTTCTTCTCTTTCACTCCCCTCTCTCATTGCTTCAAAAATTACACACTCTTGAGTTTTAGCCTCTG


Gene Sequence:
>Vu_20096(-)
ATGAACATGAATATGTGCCAAAGTGTATCAGTTACCACTGAATGCCACCAAGAGCAGGTTTTTGCCCCTTCTTGCTCAAGCAGCCTTGATGACCTCTTCTCTGCTCAGAACACGGTCAGTCGGTCACTTTAATGTTGTCTTTTTTTTTTATCCATTTCTTTTTCTGCTTTTCGAACTGTTCTACCTTAATTTACCTTGCAAGTTCTACTGTCATGGTTTCTTTCTTGGTTTGAGAAAGTGTTTGACTAATTCTTTACCAGGTTTGTAGCTATAGTGCTATACCACTGGAGCCATGCTTTGTGGTGTATATAGTAATTTCTGATATGTTGTTATATTTTGGATTGTTCCACGAAACGTGTGTAGGAAGTGGATGTCGAGTTGGAGTGGCTTTCGGAGTTTGTGGAGGACTGCTTTTCGAGTCCCCCAAGTTTTGTGTTGGGAGGCGGTGGGGCTAAGAGTAATACAAGCATAATAAGCATAAGCACAGGCGGCAGCAGCAGCAGCAGCAGCAAGGGTTGTTCTTCAGGCACATTGAAGAGAGCCCAAGAGAATGAGTGTCCTTTGCAGAATTTTGCCGTGCCTGGGAAGGCGAGGAGCAAAAGGAAAAGGCTTTCGGCCCCTAGAACGAAGGACCCTTTGAGCATATGGTCACAGCATTTGAACCCCCAAAACGAAGCCTTGAGTTCTGACCCTCAACTCCTGAAACAGGCTTATTGGTTGGCCGACAGTGAACTGATGATGATGCCAAAGCCAAAGGAGGAGCAAGAAGTGAGGAAAGTGGTGATTGGGGAGTGTGAGGTTGAAGGTAGCAGTGGTCAACAAGCAATGGCAAGGAGATGCAGCCATTGCTTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTAGGTCCAAAGACACTTTGCAATGCATGTGGAGTTAGGTACAAGTCTGGTAGGTTACTACCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTTAGCTACTTGCACTCCAATTCCCACAAGAAAGTCATGGAGATGCGGATGTCTGTTTACTCTTCCATTTCTTCTGACCTTTAG