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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20039 LG5 17248003 17248698 PREDICTED: ethylene-responsive transcription factor LEP-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 17248044 missense_variant p.Lys14Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20039.1
MNPRTTSSSSKTKKKQTAPEPHHTAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTADEAALAYDRAARAMRGSRARTNFVYADTTPGSSLTPIISPDQQPLPQPDPVLTLDPFSLLGFSSGSSSYDENASANVAASHFSQQPFFANNDNNNYYNNKNDNENSGSTVELPPLPPDITSSMGYVMEQQSDGFYWESSPMLGAMSTVSENVSAESEVFELGSSSYFFF*


CDS Sequence:
>Vu_20039.1
ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCATACGGCATGGGGCGGGAGATACCTCGGCGTGCGGCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCAACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGCGGATCACGTGCGCGCACCAACTTCGTCTACGCCGACACCACTCCCGGCTCATCCCTCACCCCCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTAACCCTGGACCCGTTTTCCCTGCTGGGGTTTTCCTCCGGTTCTTCCTCCTACGATGAAAATGCCTCGGCCAACGTGGCAGCCTCCCACTTCAGCCAACAACCGTTTTTCGCAAATAATGATAACAATAATTATTACAATAATAAGAATGATAATGAGAACAGTGGGAGCACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGTGATGGAACAGCAGAGTGATGGATTTTATTGGGAGAGTAGTCCAATGTTGGGTGCAATGTCAACAGTGTCAGAGAATGTTAGTGCAGAGTCTGAAGTTTTTGAGTTGGGGAGCTCCTCCTACTTCTTCTTCTGA


Promoter Sequence:
>Vu_20039::LG5:17246003-17248003(+)
TAATTTATATTTTAATCGTCTCAAGATTCTTAATCTTAAATATTTTACATTTTAAAGTTAATGATGCGTATATGATAACATCTAGTTTGTCCCATTCTGTAAAAATTTGTTTTTAAGAACTAAATATACTGGTACATTAATCTACAAAATTTCATTTTTAATATTTTTGTGATATATTTAATGTTATAATTTTATTAGTTTTTTTCAAATTTTTAAAGCAAAAACATATTTACTGTGTAAAAATAGCAAATTAATGTTTTTTTTTCTTTCGTAGAGTACATTTCTCATGAAAATAGTTTTTTGTTTTCTACTTTATAAGCATTAATTAATAACATGACCATAACTTTAATTATATTAGTATTTTATTGCGTTTTAAATCCCATGATTATAATTTATTTGTTGTTTAAAGCATTTCTTCCACTAAATCTAAACTAGATATAAAAATGTATACTTGTTAAATTTATTTAATTGTGTGCATTTACCTTCTAACTTAAAATGTATTTTTTGTTATATTCTATCTTTTGTTTAAATTTAAAAAAAAAAATTAACATACACAAATATTTGTTGATTAGTCCTTACTTGATTCTTGCTCATTTTTCCTTTACAAAAAAAGAAAAATATTGCATACATTAGTTGATCAAGATACTATTATATTTTTTTAAGAAAAAATAAGTTGCAATTTTTTTTCCTCAATTTTAAATTAATAAAAAAAAGGTAGAAGCAGCATGCTTCCTAATCTTGCAACCAAATGAAGAATGAATTGACTGAGCATAGCACACCCACATAATTACTAATGATAAATCTAAGTAATTTATTCTTAGAGATCTTAGCTTATAGGCTAATCATCAAAAAGGACATGGAGCTCCTCCCACCTGTAATCATCGTCCGAATGTGCAACTCATCACTTCATATGAACTTTGCCTTCATAAACAATAATCAGAAACACTAATAAATCAAATTTTATGTGGATTCTATATCTTAAATAGATTTTGTAGAGCCTCTATTTCTGATAACTTCCACGTTCATGTACTATCCCATAATTTCATTCAAACCCTCACATGCACCAACTTTGGACTATATGAAGTTTATTCCTACACAATATTAAATTTTATTTTCTCTATTTTAAACAATCCCAAACTAATTTGATTGGACGAATAATCATGTAATGGGGTATCTAGGAGAACATGCTTATCATTAGTCATTTCGATTTCTAATTATGCTACCCACTAATTATATAAACTCTCTTTTCTCACCTAAAAATAACATATTCATAATTATTATTTCGTCCTTGTTTTTCCTCCCATCATTTGAAACTCATTTCTGTAAAAATAGTTTTTTTTTTATCAAGTTTAAATGAAATGGCAATCATCATTTAAAAAAATATTTAGAATTGAATAATTAAAAAAAAATTACCAATGTTTAATTTAACCTGCATTTTACATAATTAAAAATGAACTTTTTTTGTGAACGTTTGATGCCCCCTTAAGAGTCAAATATGGATTCTGTCACCCATTGTGTCCTTTCATTGCTCCCTTTTCCCTTTCTGAGCGATACATTAGATTACTCAATTATGAGACCACAGTATGGCAAATTATGAAAGCTAATAAGTACTTATGAATAAAGCGATAAAGCTTCAAGAAGCTTAAAAAGTATAAGTTATTATTTTCCCTTCGATTTTATTTTTTATATTTTAATCAGATTAATTATTATTACACTACAACATATATATAAACTCGGTTAGGAATTTATAAATTAAAAGTCTCGTATGGATCATCTTCCATAAAGAAAAAAAAAAGGCACGTGCTCACAGAAGGAAGGGCAAGATGGGAAAACAGAAGAAAGCGAGGGCAGAAACGAGAATGCGCTCACCCCAAGTGTGTCTTATTTAAACCAGAGACTCGACCACAACAAAACAAACTCACCATTACCAAAAAGAGAAAAAACGAAACACTGAAACGCTTCGTTTCATTCATTCAGTTTCTTTCACCAACCTTCCACGA


Gene Sequence:
>Vu_20039(+)
ATGAACCCGCGAACGACGTCGTCATCGTCGAAGACGAAGAAGAAGCAAACGGCACCAGAGCCGCACCATACGGCATGGGGCGGGAGATACCTCGGCGTGCGGCGGAGGCCGTGGGGACGGTACGCGGCGGAGATTCGCGACCCTTCAACCAAGGAGCGGCACTGGCTGGGCACCTTCGACACCGCCGACGAGGCCGCACTCGCCTACGACCGAGCCGCACGTGCCATGCGCGGATCACGTGCGCGCACCAACTTCGTCTACGCCGACACCACTCCCGGCTCATCCCTCACCCCCATCATCTCCCCCGACCAACAACCCCTCCCTCAACCCGACCCGGTTCTAACCCTGGACCCGTTTTCCCTGCTGGGGTTTTCCTCCGGTTCTTCCTCCTACGATGAAAATGCCTCGGCCAACGTGGCAGCCTCCCACTTCAGCCAACAACCGTTTTTCGCAAATAATGATAACAATAATTATTACAATAATAAGAATGATAATGAGAACAGTGGGAGCACGGTGGAGCTTCCTCCATTGCCACCGGATATTACAAGTTCCATGGGTTACGTGATGGAACAGCAGAGTGATGGATTTTATTGGGAGAGTAGTCCAATGTTGGGTGCAATGTCAACAGTGTCAGAGAATGTTAGTGCAGAGTCTGAAGTTTTTGAGTTGGGGAGCTCCTCCTACTTCTTCTTCTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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