Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_19993	LG5	16344796	16346979	PREDICTED: protein LYK2	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, protein phosphorylation, phosphorylation, phosphorylation
Cellular Component	located in	chloroplast, plasma membrane
Molecular Function	enables	protein kinase activity, protein kinase activity, protein binding, protein kinase activity

SNP	Position	Effect	Amino acid change
T/A	16344903	synonymous_variant	p.Pro36Pro
A/C	16345047	synonymous_variant	p.Ala84Ala
G/A	16345050	synonymous_variant	p.Gln85Gln
A/T	16345120	missense_variant	p.Thr109Ser
A/G	16345200	synonymous_variant	p.Ser135Ser
T/G	16345323	synonymous_variant	p.Leu176Leu
G/T	16345369	missense_variant	p.Gly192Cys
A/G	16345405	missense_variant	p.Ile204Val
G/T	16345711	missense_variant	p.Gly306Trp
G/A	16345849	missense_variant	p.Ala352Thr
G/T	16345965	synonymous_variant	p.Gly390Gly
C/T	16345976	missense_variant	p.Ala394Val
G/A	16345985	missense_variant	p.Arg397Lys
G/T	16346094	missense_variant	p.Lys433Asn
G/A	16346349	synonymous_variant	p.Lys518Lys
G/T	16346550	missense_variant	p.Arg585Ser
C/G	16346703	synonymous_variant	p.Ala636Ala
A/G	16346857	missense_variant	p.Ser688Gly

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_19993.1

MATVEMIIAFHMKALVFFLCLFLPSLPKHLLSCETPSPDLSAYHCIENVSHNQCATFALFLTNSYYSSLSNLTTYLGLNKFVVAQANGFSPHTEFLSLDQPLLIPIHCTCKGRFFHAQLTKIAIKGENFYDIAASLEGLTTCKAITDNNPGVSPWNLHDKVRLIIPLTCSCPFSSLVRPQPKLLLSYPVRQGDTLSTLASKFNITQEAIVSANNISSSQGLSTRSSLPPFTSILIPLNGKPVIASFVKPKEPNSGFQATGIPVTSPHKKSPMWKTELFIGLAGVALGVCIALAAAFFFIRLKHKKGEESSCKNGDMELQHLNQSVRTNSTGDKKVSFEGSQDTLDEKIVDAASRKMLLETYTIENIRKATEDFSSSNHIEGSVYHGRLNGKNMAIRRTKAETVSKIDLGLFHDALHHHPNILRLLGTSMSEGKEQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDVASALQYMHHVMNPCYVHRNVKSRNIFLDEEFGAKLGNFGMAGCVENDTADPNFYSTNPASWSLGYLAPEYVHQGIIAPSIDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIKSILVSENVNELRGWIDSALGENYSFDAAVTIVNIARACVEEDSSLRPSAREIVEKLSRLVEELPEGEQHMLMSESSSKPLVKAVENSLE*STEGRNRSSSSDPSFWTSYKILLILLPTGNAYLKFL*

CDS Sequence:
>Vu_19993.1

ATGGCCACAGTAGAAATGATCATTGCATTCCACATGAAGGCTTTGGTCTTTTTCCTTTGCCTCTTTCTCCCCTCATTGCCCAAACACTTGCTAAGCTGTGAGACACCTTCACCTGATCTCTCTGCCTACCATTGCATCGAAAATGTCTCACACAACCAATGTGCAACATTTGCACTCTTTCTCACAAACTCCTACTACTCCTCTCTCTCCAACCTCACCACTTACTTGGGACTCAATAAGTTTGTGGTAGCACAGGCAAATGGATTCTCTCCACACACTGAGTTCCTCTCCCTAGATCAACCCCTTCTCATTCCAATTCATTGCACATGCAAAGGTCGCTTCTTTCATGCTCAGCTAACTAAAATTGCTATCAAAGGAGAGAACTTCTATGACATTGCTGCTTCACTTGAGGGCTTGACAACCTGCAAGGCTATTACTGACAACAACCCTGGTGTGTCACCTTGGAATCTTCATGACAAAGTCAGATTGATTATCCCATTGACCTGTTCTTGCCCCTTTTCATCACTTGTTAGACCTCAACCAAAGCTTCTGCTTTCTTATCCTGTAAGACAAGGTGATACACTTTCCACTTTGGCCTCCAAGTTTAATATTACTCAAGAAGCTATTGTCTCTGCCAATAACATATCATCATCACAAGGTCTCAGCACTAGAAGTTCTCTTCCACCCTTTACCTCTATTCTCATTCCTCTCAATGGTAAGCCTGTCATTGCTTCTTTTGTTAAACCCAAGGAACCCAATTCTGGCTTTCAAGCAACCGGCATCCCTGTAACCAGTCCACACAAGAAGTCACCAATGTGGAAGACTGAATTGTTCATTGGCCTTGCTGGGGTTGCTCTTGGAGTCTGCATTGCTCTTGCTGCAGCCTTTTTCTTCATCAGATTGAAGCACAAGAAGGGGGAAGAGAGTTCGTGCAAAAACGGAGATATGGAGCTTCAACATCTCAATCAAAGTGTGAGAACCAACTCCACCGGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATACCCTTGATGAGAAAATTGTTGATGCCGCTTCGCGTAAGATGTTGCTGGAGACATACACCATCGAGAACATCAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGATCGGTATATCACGGTCGTCTGAATGGGAAGAACATGGCAATCAGGAGAACAAAGGCAGAAACAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCACCACCCCAACATACTCAGGCTTCTTGGAACAAGCATGTCAGAGGGGAAGGAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACATGGAGGCAAAGGCTGAGGATCTGCCTTGATGTGGCCAGTGCCTTGCAGTATATGCACCATGTTATGAATCCCTGCTATGTGCATAGGAATGTAAAGAGCAGGAACATCTTTCTGGACGAAGAATTTGGTGCCAAGTTAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGCGGATCCAAACTTCTATTCCACCAACCCCGCCTCCTGGAGCCTTGGTTATTTGGCACCTGAATACGTTCACCAAGGTATAATTGCCCCAAGCATTGATATCTTTGCCTATGGGGTGGTTTTGTTAGAGGTTTTATCTGGTCAAACTCCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTCACAGATAAAATCAAGTCCATCTTGGTGTCTGAAAATGTGAATGAACTAAGGGGCTGGATAGACAGTGCATTAGGGGAGAACTATTCATTCGATGCAGCTGTGACCATTGTCAACATTGCCAGAGCTTGTGTGGAGGAAGATTCTTCATTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCGAGATTGGTGGAGGAATTACCAGAAGGAGAACAACACATGTTAATGAGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAGTCTTGAGTAATCCACTGAAGGAAGGAATCGAAGTAGTTCTAGTGATCCTAGTTTTTGGACATCATATAAAATCTTGTTGATTTTACTTCCTACAGGCAATGCCTACCTGAAATTTCTATAG

Promoter Sequence:
>Vu_19993::LG5:16342796-16344796(+)

TTACAATACTCAAATTTATAATATAGTTTAATATTTCTGATAAGACATTTTTTGTTTGTTTTGTAGTGCTCTCTAATATCGCTAATATATATAGATCACGTTATTTAATAAAAAAATATAATTTTGAAATGAATAATAAACTTCTAAAATATTTTTTAACCACAAACATATAATGTTGGTACGATAAAATGTATAATTTGACATTTTAAATTATATTTTAAGAAAGGTCTTAGAAAATGTAAGAGGCCGAGGGTCCTTTTTCCATCACTATATTTTCATTATCTTAAAAGTATAGGATGATGTATTTTTCACTTTGTTGGAAGTAACTTTTTTCTTATATTAACTAAACTCCCTTGATTTTACCAACATAACACTGTTAAAAAATGAGCTATTTGATAGTAGTTGTAGAAGCAGAAATGAGTGAAACATAGAGGGTATCACAGGAACCATGTGCTTCATGTCAAATGGCTTTTGAAACCATGGGGACCATTTTCCCCTTCTCCCAATCACAAGACTAATAAATATTAATCTGTGAAAAAGTAGTTACGAGAAGTCATGAACTTGGACAATTAAGTCTTTAATCCTATTAGTACTAGGTTCTCAACCTAACTAACATTGTTGCACTTAGATTTGTTCAAAAGGCTATGCATTATTTTAAAATTAATGATGGTCCATGGACTTAATACGTAAATTAGTCAATCTACTAATCTTTATCTTCTCTCTCTATTTTTTTTATTATTATTCTCTTTGTATGTAAACATTCCTTCCTCTAGTCATTCATATCTGTCTTTTATGGAAATATATTTAAAAAATATTATCTTCATTGATTAGGATAATTGATTTTCTCTCATGCCCAAAAAAAATGATTTGCTCAAATCTCCTTGAAATTAAATTGAGTTATTCTAACATTCCTTAAAGAATTACTTTTGACTTTTTAGTTAAAAACTTGAAAATGTCATTGAAGTAAATGAATTCCTCTATAATTTCTTTGTATAAACAACACAAGGTTGTTGAAGTATTTAAAAAGAAGATGAAAGGTTTTTTGAGAGTAAATAAATTAAAAAGTTAAATATACATTTTTTTTCTAAATTATTTTAAAAATTTTATTTCGTTTCTAAATTAAATTATATATCTATTTCATCTTATACCTTATGAAAATAATGTAAACTATTTCTATTGATAATTTGATTATTTTTCCGGTGACAAACATAGTTTTATAATTAACTATAATAAAATATTCACGTGCTCACTTTTAGAGTAGATATTCTAATTAAAATGCATTAAGAAATATGTATATAATTTAATTTAAAAACGAAATAAATTTTTTAAACATAGTTTGAGAAAGAAAAACGAAGTTAACCCAAAACTAAAAATGTATTCATTAAAAATAAGTTAAGAATTTAAAATTAAAAACGAAGAGAAAGTTTGACTTTTAAATCCCAAAAATTATATTTATTAATTTAAAAGTAAAAAGATTTTTCATATTAGCAAGAAGAAATTTATTGATACGTAAACAAAATTATTTAATTTTTTATGCATTTAAAAGAAAAAAAAACTTGTGGAAGGATATTTTATATAGAAGTTGTTAGTGGATTTTGTGAGTGACAAGGAGAAAGCACATAGAAAGTAAGAAATAATATGAAATAGAGATATTTGACAGGAGACAGAAGCATGAGTGTGAAATGTTAAATGAGTGAGGTTGGTCACATGCAGAAGAAGAAGATGCATATAAAGGGAGGTTTGAAGCCCGAGAAGTGTCTAAAAGCAGTGAGTTAAAAGAGTGTTGCTATAGTCACCTGAACAGCTGGAAGCAGTGACAAAATATACAAAATAAACTTCGTGATTCCCAAGACTTGTGTCTCCGAGCAGCTTTGAAAAATTCTGTTATCTTTCTCTGAGTTATTTTGTATAGATCCGAAATATTCAGTCCCAAGACACAAAAGAAAAGAGAGTGTTGTATTTTAATAGGCCACTCCATGTTAGAGCTTGGTGAGTGGTGA

Gene Sequence:

>Vu_19993(+)