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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19854 LG5 14185300 14186148 PREDICTED: ethylene-responsive transcription factor ERF034
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 14185394 missense_variant p.Ser252Asn
A/G 14185463 missense_variant p.Leu229Ser
A/G 14185704 synonymous_variant p.Leu149Leu
T/G 14186026 synonymous_variant p.Ala41Ala
G/T 14186135 missense_variant p.Ala5Asp
G/A 14186137 synonymous_variant p.Asp4Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19854.1
MESDAGENLFTTFFSSSSTSMTISTTTTTITSSSSSPSSSASSTSSSNSCTKQDSQTSPPDDSTTAQNQNTPNKECKKRQRNGDDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQDLPRPITTSPKDIQAAAAKAATTFFDDGKRCEAEKDEQNHTEQASSSTLCMENTEVEQVQAEEASPSTLSMDTTQGSLTSHSTADDDTLFDLPDLFPDGNSGLFFSYSSSWHLCAADSGFRLEEQFLWENY*


CDS Sequence:
>Vu_19854.1
ATGGAAAGTGACGCTGGGGAAAACTTGTTCACCACATTCTTCTCCTCCTCCTCCACATCCATGACCATCTCCACCACCACCACCACCATCACATCATCATCATCATCACCATCATCATCGGCATCTTCTACCTCAAGCTCAAACTCATGCACCAAGCAGGACTCCCAAACAAGTCCTCCAGATGATTCAACAACAGCTCAGAATCAAAACACCCCAAATAAGGAATGCAAGAAAAGACAAAGAAATGGTGATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCGAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCCAGAGCACACGATGTGGCAGCTTTAGCCATAAAGGGTCACTCGGCTTACCTCAATTTCCCCAATTTAGCTCAAGATCTTCCAAGGCCAATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTTTCTTTGATGATGGCAAGCGTTGTGAAGCAGAAAAGGATGAACAAAACCATACAGAACAAGCTTCGTCTTCAACTCTATGCATGGAGAATACTGAGGTTGAGCAAGTTCAAGCAGAAGAAGCTTCACCTTCAACTCTATCCATGGACACTACTCAAGGGTCTTTAACTTCTCACTCTACTGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAGTGGACTTTTTTTCTCCTATTCTTCTTCTTGGCATTTATGTGCTGCTGATAGTGGATTCAGGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG


Promoter Sequence:
>Vu_19854::LG5:14186148-14188148(-)
ACAGTAAATATAATATAACATCCATATGTAAGTTATTCTACAAATATAACTTTTATAAAGTTCAGGAATTAAATAATTTATAACTTACTTTAGAAATATAGAACAATGTTTTAATAGTTTAGAAAAGAAAAAGTTGTTTAATCCTAACAAATTTTATGTTTTAGGAGTGTTCAACACAGAATGTTGACCAAGAAATATATATATATATATATATATATTATCTTTGATGTCTATATATATGTTTGGTTATACACATGTTGCAACATCCTGTATACTTCATTTAATATAGTTATTTGTAGATCGAAACAAAAATTATGGTTATGAAATTAATTACTTTGAAAACTTTTTTTTCCACTATGATCTAAATATTTCTTCATTCTATATCTCTCAAAGACTATTTTGTAAAAGATTTACATTTATAAGGTTAGTTAGTATATGTTAATAACTTGAATTAATTTATCCTCATAGGAAAAGGTAATTAATGCAATTGATATTTCTGTTTAGCATTTATTGGTAGAAATTTAGGCAGATTTTATCTTAATTTTTTTTTAGCATTGGAATATATCACTTTCTGTAATCTCAGAGTTGCTCTGTTTTTATTGATAAAAAATCTACGAGAATCTTTCAGAGAAAAAAAAATCTTAAACAAGCCGAAAATGAGAATAGCTCGCTTTCTTTTGCAATCAATTCACATGGGCATCGTTTATGCATTATTTCTTTTGTTTCTCTGTCAATCTTTGTACACGCTCCGCATACATGCATCAAGGCTAACAAAAAAACATGCAGAGTGAAAGTGAACTGAGAATTGAAGAGGAGAAAAACGTGGCTGCATAATTTGACTCCTCAACCACAAAAAATAAAACTGCACCACACTTGGAGCCAATAAGCACATGCATCGCAGAGTACGTTAATCATGTTTATCTTTAAGTAAATATCCAAGATTCCACCAAAATTTACTGTGTCAACTTTAGATCTCACCAAAACACTTCCAATGAATACAAATACTCAAGTCAACCATTTATGCATTAGGTGACTGCGTTTATTCATCACAGAAATTTGACCAAAAATTATGACAATAGTCCTCATTTCATTGGCTCTGCTTTCGTCACATCTGTGTATAAAAATAATTAACACATTTTTCTACTTAGAAAGACCTTTCATAGGAGGCCGTATATAATTGAGTCAGCAAGCTGATTAATTATATAATTAAATTCTGATTTTCAAGAAACATTGACACCTTATGTTTTAACCAACTTATTATAAAGTTTATAATTATGATTCGCTCACATCATCGCTTTCTCTCTTTTATATTCATTTATATCATCACTCGTTTTCTATCTTTCTCTTGTTTTTAATAAACCACTCATCGCATTTTCCATTTTCTTTTCCTTCTTTCTTTTCTCTCTCTCTCCTACGCCAACTTTACATATACTTGACCAACACAGAAATCGTACGTGTAAATAATGTCTAAATAGAGAGATTAAAATATTGTACGTATGATATCTGTGGACCCAAGTGTCCCTCGAAAATATTAGGACATAATAATGTTAAATAAGAAGGAGATGAAGAATTCATGTGAATATCATGCTACAGAAAACATGTCATATCAAACGAACCCAAGCAGAAGCTGCTCTCCAATGTAGGACAAACGTTACTGGAACAAAAATGTACGCAACCATATAATATATATGTGTGTGTGTATAAATATCAGTACCTAAAGGCATGTTATTCAATTTCAACATGGGAAACCAAGTAGCTGAACTGTAGCCTTCTTCTGGAGCCCATGCTGGTTTATATTCCTTTTTCTTTTTTTCTCCTTTGGCTTTCTTTTTCTTTTCTTTAAATTTGTTTCTTCTTTTTCTTTCTCTTTATATAAATCCAATTCCTTTTGGGGGAATCATAAAAGACAAACAGCTCTATTTTTATGTGCCCTTCACTCATTCTCTGTGCCTCTCCAATCAAACCCCACCCACCCTTTCTTCCTTGGGAAACATATCAAC


Gene Sequence:
>Vu_19854(-)
ATGGAAAGTGACGCTGGGGAAAACTTGTTCACCACATTCTTCTCCTCCTCCTCCACATCCATGACCATCTCCACCACCACCACCACCATCACATCATCATCATCATCACCATCATCATCGGCATCTTCTACCTCAAGCTCAAACTCATGCACCAAGCAGGACTCCCAAACAAGTCCTCCAGATGATTCAACAACAGCTCAGAATCAAAACACCCCAAATAAGGAATGCAAGAAAAGACAAAGAAATGGTGATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCGAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCCAGAGCACACGATGTGGCAGCTTTAGCCATAAAGGGTCACTCGGCTTACCTCAATTTCCCCAATTTAGCTCAAGATCTTCCAAGGCCAATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAACCACTTTCTTTGATGATGGCAAGCGTTGTGAAGCAGAAAAGGATGAACAAAACCATACAGAACAAGCTTCGTCTTCAACTCTATGCATGGAGAATACTGAGGTTGAGCAAGTTCAAGCAGAAGAAGCTTCACCTTCAACTCTATCCATGGACACTACTCAAGGGTCTTTAACTTCTCACTCTACTGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAGTGGACTTTTTTTCTCCTATTCTTCTTCTTGGCATTTATGTGCTGCTGATAGTGGATTCAGGCTTGAAGAGCAATTTTTGTGGGAGAATTACTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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