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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19751 LG5 12263838 12267819 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Pathway   B 09191 Unclassified: metabolism   C 99980 Enzymes with EC numbers
SNP Position Effect Amino acid change
G/A 12263923 3_prime_UTR_variant
G/A 12263978 3_prime_UTR_variant
A/C 12263984 3_prime_UTR_variant
A/C 12264085 synonymous_variant p.Leu615Leu
G/A 12264372 synonymous_variant p.Leu520Leu
T/C 12264823 synonymous_variant p.Gly369Gly
A/C 12264891 intron_variant
T/G 12264914 intron_variant
C/T 12264930 intron_variant
A/T 12264931 intron_variant
A/G 12264940 intron_variant
T/G 12264944 intron_variant
T/G 12265075 intron_variant
A/T 12265080 intron_variant
A/C 12265122 intron_variant
G/C 12265123 intron_variant
G/C 12265126 intron_variant
T/A 12265439 intron_variant
A/T 12265703 synonymous_variant p.Gly331Gly
T/G 12266334 missense_variant p.Gln121Pro
T/A 12266496 missense_variant p.Tyr67Phe
A/G 12266500 missense_variant p.Ser66Pro
C/T 12266562 missense_variant p.Arg45His
G/C 12266829 intron_variant
A/T 12266857 intron_variant
A/T 12266873 intron_variant
T/C 12266880 intron_variant
G/A 12266893 intron_variant
G/C 12266899 intron_variant
A/G 12266948 intron_variant
A/T 12266968 intron_variant
T/C 12266986 intron_variant
G/T 12267097 intron_variant
G/C 12267128 intron_variant
A/C 12267157 intron_variant
A/T 12267159 intron_variant
A/G 12267168 intron_variant
C/T 12267320 intron_variant
G/T 12267330 intron_variant
T/C 12267403 5_prime_UTR_premature_start_codon_gain_variant
A/T 12267404 5_prime_UTR_variant
T/A 12267415 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19751.1
MGSPVNGLDSLAEVQNSVSVADHDPPSTSGIPRPSRPPLSTSRNRGASSSQHNNYGMKTIHHQKHSYQEADSVERDEMQNMEKQHYNTNGKSEYVSLNKAVESCLGKNISKMETKLSIKQQLNASKNCDSSKGVVDGTKSNCQSEITFCPSPQNSFYSEAKESFGNTGVSECVSVDKSVESGEVTNSCEFNESRKTSICRGSTGSDVSDESSTSSLSSALYKPHKANDIRWEAIQAIRARDGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNSTLETKSSGYCMQPACIEPTCVIQPDCIQPSCFTPRFLSGKSKKEKKLKPKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGPANRATLFNVVGQPLKFPESPSVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRQAMKALAAEKLPGVKPSGNYLDIDFF*


CDS Sequence:
>Vu_19751.1
ATGGGTTCACCTGTTAATGGATTGGATTCTTTAGCAGAAGTTCAGAATTCAGTTTCTGTGGCAGATCATGATCCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCGCCGTTAAGCACATCCAGAAATCGTGGGGCTTCATCCAGTCAGCATAATAACTATGGAATGAAGACCATCCACCACCAAAAGCATTCATATCAGGAGGCTGACAGCGTAGAGCGAGATGAAATGCAGAATATGGAGAAGCAGCACTATAACACAAATGGGAAATCTGAGTATGTGAGCCTCAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAATTAAGTATCAAGCAACAGTTAAATGCTTCCAAGAATTGTGATTCGTCAAAAGGTGTTGTTGATGGAACAAAGAGCAACTGCCAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGGCAACACTGGAGTCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAACGAGAGCAGGAAGACCAGCATCTGTAGAGGAAGCACTGGAAGCGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTATACAAGCCCCACAAGGCAAATGACATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGGTGTTGGAAATGAGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAGTTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTTTACGTGGCAGAAGTTCTCCTTGCGTTGGAGTACTTGCACATGCTTGGAGTGATCTACAGAGATCTGAAACCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGTGCTGTGAGTCCAACACTGGTGAAATCATCAAACTCTACCTTGGAGACAAAAAGCTCTGGATACTGCATGCAGCCTGCGTGCATTGAGCCAACTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCACGATTTCTCTCGGGAAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAATCAGGTGACCCCTCTTCCCGAGCTCATTGCCGAGCCCACCAATGCTAGATCAATGTCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACACGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTGTATGAGCTCCTGTTCGGAAGAACGCCGTTCAAAGGTCCGGCGAACCGTGCAACGCTGTTTAATGTTGTTGGACAGCCCTTAAAATTTCCAGAATCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGCCTTGCTTACAGACGTGGAGCAACAGAAATAAAACAACATCCATTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCCCCAGAGGTTCCAAGACAAGCCATGAAAGCACTTGCAGCTGAAAAGCTTCCTGGAGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA


Promoter Sequence:
>Vu_19751::LG5:12267819-12269819(-)
ACTATAATGGTTATAGTAAGTAGTGAGCATGGGTGTTAACGAGTGGATAGACCAACGGTCTATGTGTGAGATGTTAGTGATGACATCAAGGGTAAGAGATCAAGGATCGATGATTGAAGTTCAAGGATCGAATATCGAGGATCGAGTAATTCAGTATGATTGAAAGTTTTTATGTTAGAGGATTAAGAATCCTATTGTTGTTACTACTATGTATATGGTGTTTGATTATGGTTGATATAATCAGAAGGTATGTATCTTGTTGTGTGTTTGATTATGGTTGATATAATCAGAAGGTATGTATCTTGTGTATTTGATTATGGTTGATAAATCAGTATTTATGTTTCTTTGTTATGATTGTTTTATCGGTAGCTAACCCCATACATGTTTGTATTTATGTGTTTGTGAATGAAATTATTGGCAATGATAGTATAATGCATTATACGTGAGCAAAAATGTTACCTATGTTCTAGAGGCGTGATTGACTCGAGAGAGGATGGGAATAACCTTGGGATTCATTCAAAGGTATTTTGTTTTACAAGTTAAGACAATATAATTGAAGTATTTCCTTCGTTATTTTATTATTCAAAATAATGTAATTGAATAAGGTTTTCTTTAAGTACGTTTTTATGTTATGATAAATTTTGAATTTTATGGATTTTTAATAACCTGTGACATCCCAGAAATCGATGTGTTACACATATAATGTAGTCTCAGTACACTTCCTAGAATCATAACCAAAAAAGAAAAGAAAATCCTTTCTCTTTTAAGAAAATTATTATTTAGTTAAATATTGTGCTTAGGCTTTTCAAAATGTGAGATACGAACAAGTACTTCGACACATTAATATTGATTTCGTTTATGGACAATATAGCATAAACCATCATTAAATACGTTTTAAAAGTTTGTATCTAGAGATGTTTGACTTGTATGATGACTACATGAAGTGGTCTGCCTGATTACTTGTTAATCTATCATAACAATAGTGTATTGACTATTGTATAATTTAATACACTATGATCAAACTGACTTATAAAATATAAATAGATCACTGAATTTAAGATTAAACTCGTCTAAGTAAGAATTCACAAATCACAAATGTAAAAATATCATATTATAAATAATATAATTATTAAAATATTTTATCCATATTTTCATTAAGTATACTTAATATTTTGTTGATAATACTGAGTTAAAGTGTAAGAATGTCCTAAGAAAGAAAAAAACAAGTATTTTAAAGAACAAAACTTAAATAAAGTTCTACAATTGAAGTATTTGCATATAGTTTTTTACTTTTTAACAACCCATACTATTAGCCTAATATCACAAGAATATTATGTAAAATATTATTCACTTCAAATTTAATCTATTTCACAAAATCGTTTAGTATAATAACTGAAGTGAAGGTATTTATTATTCATTAAAAATATTAGAAAACGATTTTATCCGAATTTATAATTAATATCCGTTGATAATAACACTACCTACCACTTTACAGAACACTCAAGCGAGAAAAAAAAAGCATGAAAAACATATACAGCAAACAAGAAAGAAAAACAACCTCAAAAAGTTGAGAGCAACAGAATATAGCGTTATGTATTTTTTATTACTTAATTTGAATAAATTATAATTTTTTAAGTTATTACCACTTATCAGTTATATAATATATTATATTGAAACAGTAATATAAAATGCATTTCCATTGATATCACATCAATAATTATTCTTATCATAGAACGTTATTAAATAAATGTAGCCAAAAAAAAGAATTGAACGCTTTGAAAATCTGTAACTTATACAAAAATTAAAGCCAATAACTTTTTAAAATTAAGAGATCTTAGTAAATCATAATATTTATAAAAATTAAAAGCATATCAGAACCAATGAAAAAATTGGGAAGAAGTGCCTCTTAAGTTGAGAATGAAAGTTTCTCATGCCAGTTCCAACCACAGTGTATGCTCAAAAAAATGCATTAAATATTGAGAAAACAAGAACAAGAAACT


Gene Sequence:
>Vu_19751(-)
AGACAAGGTTGGGTTTCTTTTAGAGGGAACACATACATAGCCATTAAGATAAGGAACTGCGCTCAATTATTTTAATTGGTTAGCTTTGCTTGTGAGGTTGGCTTCGTTTTCTGCAATTCCCACTCCACAAAGCCACGCCCTGCATCACCCCCAAAAAACTAACAGAAAAGCAAAAAAGAAAAGAAAAAGAAAAACCAAAAACTTAAAACAACATATTATTATTAATATCGCTGTAATTATTGTTACAGTTTTCATTTGTCTTGTCCCTTTATTTTTCGATTGGATCTGAGGCTCTTCAGAGTTGCAGAAAGGCACACCAAAGTTGCTTCACTTTCTTGGAGTGTAGTTTCGCTTTGTTCAGAGCAAACTCACACAGAGCTTGTGAAATCCACAGCCATGGAAGAAGGTTTCTTACTATGCAATTTCATTGCTGTTTTTCTGCTTTGATCAGGTATGCATGTTGTTGTCCATTATTTGTTTATTTATTTCCTCTACTCATGCCCTTTTGTTGCCTTCCTTTATTGGGTGGCTTTAAATCACTGTTCCTGTAGTGTAACAAAAGAAAAGGCTGAAGGTGGCTTCTAATGGATACAAAAACAAAAACTTTAACTTGGGTGCTGTTACAAGTTAATGCATTTTTGCAATCAAAAGTAAAGGGGTTGTTAGTTTTGCGAAGTTATGGTTTTGGTTTCTGTGGTGTTGATCAAGGAGGAACAAGATTTCTTGGTGATTTTGTGAAAGAAATTTTGATATCTGAAAGCCTTTGTGAGTTTCCTTGATGCTTTTCTTTCTTTTGGGTTGAAAGACTGAATTTGATTTGATGCTTTGCGTTTAGGTTCAGCCGTTTTCTTTCTAATGGATTCCGTTCAGTTGGGTGGTGTTCGAGTATGTGTATCTAAAACAGGCCTCTTGGAAAGTTTCTAATGCTTTTCTTTATCTAGTCGTTTGAATATCACTCTGCATCATTTTAATTTTCCTTCTATTTTCGACCTGTGTTATTTCTTTAAAGTAAGAAAGTGGTATAAGGAATTTTTGGTTGTTTATGTTTCTATGCCTTTTAAATGAGTAAATCTCAGTAATTCACTGCGTTGAGTTGGATTTTGCAGCTCATCAAGGATTTCTTAATGGGTTCACCTGTTAATGGATTGGATTCTTTAGCAGAAGTTCAGAATTCAGTTTCTGTGGCAGATCATGATCCTCCTTCAACATCAGGGATTCCCCGGCCATCTCGGCCGCCGTTAAGCACATCCAGAAATCGTGGGGCTTCATCCAGTCAGCATAATAACTATGGAATGAAGACCATCCACCACCAAAAGCATTCATATCAGGAGGCTGACAGCGTAGAGCGAGATGAAATGCAGAATATGGAGAAGCAGCACTATAACACAAATGGGAAATCTGAGTATGTGAGCCTCAATAAAGCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCAAAATGGAAACTAAATTAAGTATCAAGCAACAGTTAAATGCTTCCAAGAATTGTGATTCGTCAAAAGGTGTTGTTGATGGAACAAAGAGCAACTGCCAATCAGAGATTACCTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGAAAGTTTTGGCAACACTGGAGTCAGTGAATGTGTTAGTGTTGATAAGTCAGTTGAAAGTGGAGAAGTTACTAATTCCTGTGAATTTAACGAGAGCAGGAAGACCAGCATCTGTAGAGGAAGCACTGGAAGCGACGTTAGTGATGAGAGCAGCACTAGTAGTCTGAGCAGTGCTTTATACAAGCCCCACAAGGCAAATGACATAAGATGGGAAGCAATTCAAGCCATTCGAGCCCGTGATGGGGTGTTGGAAATGAGACATTTCAGGTTATTGAAGAAATTGGGATGTGGAGACATAGGAAGTGTATATCTAGCTGAACTAAGTGGCACTAGGACTTGTTTTGCAATGAAAGTAATGAACAAAACTGAGTTGGCAAGTCGCAAGAAGCTTGTTAGGTCTCAGACAGAGAGAGAGATACTGCAGTCTCTAGATCATCCATTTCTACCCACATTGTATACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCTGAGATTGCTGCCAGGTTAGCCATTTCATTTTTCCTTGCTTGCCCCATCAGTTCTATCGACATACAACATGCAGAGGCATTAGATAACTGTATTTTCCTTCCTTGGAGTCATGGAATCAAGTGTTCTATCTGTAGGGCCAGAATAGAAACTGTATCATTTTAGAAAATATCTGTCTTTCTCTACAAGAATAAGGGAACCTGACTGAGATTTTTATCATATAAAGCTGAACTGTCACAAAACACTGTAGTTACTATCCATTGCTGCTCAAGGACCATGAGAAAATCCTTATATTTACCAAAACATGGCCCAAGAATTCTAAGTAGCCAAGCTTTATTCTTTTCCACTCCCTTTATTGTTTTAAAACCTTCCAAGCTTTTTTCAAGTCTCTTATGGATGTCTGCCAAAAATGGTAAAAATACGCTTGCTCGCTGCACACTGGACCGTTTCTTTTTCTGCCTGCATAATTACCTTTCCTTTACTACTTCCACCTTTTCCCACAATCAAGTTTCAATCTCTATTTTCTTGACACTTCTAACTTCAATGGTTGTGATTATTACCTGACTTGCCTTTCTCTTATATATTTTTTAGAGTTATCTTTCTATGTCATAGAATGTAAAAATTCTGTTTTTCATTTTTCTTTGAGAATAACTAACATTGATTTTCTGTCATCGACATCAGATGGCAATTCATTTGGTCTCTCTGGTGTTATCAATTTCTCCAACCTGTGTCCTATTAGATGAAACGAATAAAGTTGTCATTTGATTAATATGTACCGTGCAGGTTTTACGTGGCAGAAGTTCTCCTTGCGTTGGAGTACTTGCACATGCTTGGAGTGATCTACAGAGATCTGAAACCTGAGAATGTGTTGGTGAGAGAAGATGGACATATAATGCTTTCAGATTTTGATCTCTCTCTAAGGTGTGCTGTGAGTCCAACACTGGTGAAATCATCAAACTCTACCTTGGAGACAAAAAGCTCTGGATACTGCATGCAGCCTGCGTGCATTGAGCCAACTTGTGTAATTCAGCCAGACTGCATTCAACCATCATGTTTCACACCACGATTTCTCTCGGGAAAATCCAAGAAAGAAAAAAAGTTGAAGCCAAAGAATGATGTGCAGAATCAGGTGACCCCTCTTCCCGAGCTCATTGCCGAGCCCACCAATGCTAGATCAATGTCCTTTGTGGGAACACACGAGTACCTGGCACCTGAAATCATCAAAGGTGAAGGACACGGCAGTGCTGTAGACTGGTGGACATTTGGGATATTCTTGTATGAGCTCCTGTTCGGAAGAACGCCGTTCAAAGGTCCGGCGAACCGTGCAACGCTGTTTAATGTTGTTGGACAGCCCTTAAAATTTCCAGAATCTCCCTCTGTGAGCTTTGCTGCCAGGGACTTGATCAGAGGTTTACTTGTGAAAGAACCTCAGAATCGCCTTGCTTACAGACGTGGAGCAACAGAAATAAAACAACATCCATTTTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCCCCAGAGGTTCCAAGACAAGCCATGAAAGCACTTGCAGCTGAAAAGCTTCCTGGAGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTTTGATCTTATTGTCTGTTTTCTCATTTGAACTAATTTCCATCTTTCATTTCTGTTGTTTTTCCCCTTGCTTCTTTCCTTTGTATAAAAATCATGCAACTCTTTCATCTACATTCATTCTCGCTTGTAATTGTCCATCATAAACTGTCCTAAGAACCTCCCAAATGCATGAAAATTCAACAACAAAGTTTCTGCTCACTTATTT

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