Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19728 LG5 11840780 11846091 PREDICTED: transcription factor UNE10
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative gravitropism, response to blue light, regulation of transcription, DNA-templated, negative regulation of seed germination, transcription, DNA-templated, seed germination, transcription, DNA-templated, response to far red light, regulation of transcription, DNA-templated, de-etiolation, de-etiolation, regulation of transcription, DNA-templated, response to light stimulus, transcription, DNA-templated, double fertilization forming a zygote and endosperm, regulation of transcription, DNA-templated, negative gravitropism, negative regulation of seed germination, seedling development, transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, plasmodesma, nucleus
Molecular Function   enables   protein dimerization activity, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding, protein binding
SNP Position Effect Amino acid change
C/T 11841001 synonymous_variant p.Asp12Asp
A/C 11841159 intron_variant
A/T 11841300 intron_variant
G/A 11841518 missense_variant p.Arg77His
T/A 11841519 synonymous_variant p.Arg77Arg
C/T 11841714 synonymous_variant p.Gly142Gly
C/T 11841767 missense_variant p.Ser160Leu
T/A 11842077 intron_variant
C/T 11842184 intron_variant
A/T 11842245 intron_variant
G/C 11842264 intron_variant
T/A 11842595 intron_variant
T/A 11842596 intron_variant
T/G 11842929 synonymous_variant p.Ser256Ser
T/G 11843373 intron_variant
T/C 11843487 intron_variant
C/T 11843553 intron_variant
C/T 11843748 intron_variant
G/C 11844098 intron_variant
A/T 11844128 intron_variant
G/T 11844233 intron_variant
T/G 11844302 intron_variant
A/C 11844311 intron_variant
A/T 11844315 intron_variant
C/A 11844379 intron_variant
A/T 11844387 intron_variant
G/T 11844426 intron_variant
A/C 11844485 intron_variant
G/T 11844493 intron_variant
A/G 11844576 intron_variant
C/T 11844861 synonymous_variant p.Ser382Ser
A/T 11845042 intron_variant
C/A 11845091 intron_variant
C/G 11845139 intron_variant
C/A 11845190 intron_variant
G/A 11845229 intron_variant
T/G 11845916 3_prime_UTR_variant
C/G 11845938 3_prime_UTR_variant
T/C 11846047 3_prime_UTR_variant
A/T 11846070 3_prime_UTR_variant
A/T 11846071 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19728.1
MSQCVPSWDVDDNPPPPRLSLRSNSSSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKLPTIAANKYTWEKPRAGGTLESIVNQATSLPHRGKPTLNGDGGVYGNFLVPWLDPHAATANTVTMDALVPCSKREQSKQGMESVPSTCMVGCSTRVGSCCGNHGAKGQEMSGRDQSVSGSATFGRDSKHVTLDTCDRELGVAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVDENGEDEKKKRGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMEMNSMNRANIPAIPPVLHPSAFMPMAASWDAAAAGGGDRFQGNPATVMPDPLSTLFGCQSQPMNMDAYSRLAAMYQQLHQPPVSGSKN*


CDS Sequence:
>Vu_19728.1
ATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCCCAAGACTCTCCCTTCGCTCCAACTCCAGTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACTTGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCTTCCAACAATCGCCGCCAATAAGTACACATGGGAGAAGCCTCGTGCCGGTGGCACTTTGGAGTCCATAGTGAACCAAGCCACGAGCTTACCGCACCGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTGGTGCCGTGGTTAGACCCTCACGCCGCGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAACGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGAGAACTTGGTGTGGCTTTCACTTCCACCTCTATCAACTCTCTCGATAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGATGAAAACGGGGAGGACGAGAAGAAAAAGAGAGGAAATGGAAAATCTTCGGTGTCTACTAAAAGGAGCAGAGCAGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAGTATTTGAAGCAGTTGCAAGCACAGGTGCAAATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGATGGAAATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCCGCCTTCATGCCGATGGCGGCGTCGTGGGATGCCGCTGCCGCTGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACACTTTTTGGATGCCAATCACAGCCGATGAACATGGATGCCTACAGTAGACTTGCTGCGATGTATCAGCAGCTGCACCAGCCTCCAGTTTCTGGTTCCAAGAACTGA


Promoter Sequence:
>Vu_19728::LG5:11838780-11840780(+)
ACTTTATATAGTGCTTGTGGCTTATTCGAGGTTGTAAGGAACACATATCGCTTCTAGAAAGAAGTTACAGTTCCTTGTAACAACTGTAAGTAGTTAATCTTTCAGACTATTGAAATACAAGTTTATAATTTATGAATTTAACTTGTAGTGTCTGCGTCAACCAAGGAGCTTTGAATGTGGATATCATGTCATGAGGCACATGGAGAAAATCATATCCACAAATGTCATAGACTCATGGAATTTGGTAACGTGAACATTTTATAACTAATATCTTAAGCCATTATTATTATAACTTGACTCAAATTGTTCATTGTGTAGTATTAGGTAACACATCTCTAATGGAGTAAGAGGTCTTAAAGGATGTTTAGGAGCAATGAGCTGCATTTCTTTTAGGTGTTTATAGATGATGTTAGATAAATATTAGATATGTTCATTATACATTGAGGTTAGGGATTATTATTTATGTGTAATAGTAGGAATTATATTGATTATTTTGTTCCTTGTATATATATCTAAACTGTGTTCTGGGATTGAATTTTATGTAGGTTTGTATATGGATGATAACACATACAGATTTGGTATTGAAAATAAAATGTCACTTTTTTATACCAGTTAATGTTAGAACCGATATAGGAAGTGACTTTTTATACCGGTTACAACACTAACTAGTATAAAAGTTTACGTTTTTTTATAGCAATTAAAGTCATAATCGGTATAAAATGTCACATTTTTTATATTGGTTAGAGCCCCAACCAGTATAAAATGTTTGTATCATATAGAGATTTATCCCTCTCTTAGGAAACTTCTATACTGATTTCATAATCAATATAAAAAGTGAATTTTCTTACTAGTTATAGAATTGGTATAAAAAGTTGAATACTTTCTATACTCTTTGTTTCTATACCAGTTCAAAAATTAGTATAAAATGTCTTTTTTAATTGATATATTTTTTTTTTCTAGTATAGTGTTAATCTTGAAATTAAAGTAGTATATAATGAAAATATTATTTAATCAATTATTATATCATGATATATTATATAAAAAATATTTTATAAATATAAAAAAAATTTAATAAATATATTAGAAGAGTTAATTAGTAATTTGTTATGTATATTTAGGTCTATAATCCACTTTAATCCTTATATTTTTTATTTATTTATTAAATAGAATCAATTTAGTTCTTTATGTTATGTTGATCAAATTCCTAAAAGTTTATTTTATAAACAATTTTTGGAATATTTCGTACAGAAGTTATTAAATAGAATAAAGAGAAAATTGAAAAATGGATTAGAGATGAAATAAAAGAAAAGTTATAGGTAATATTTGAAGATTATCATGTGATCAGAATGTACATAATTTTTTCAGGATTGATAATTTTAAATTTATTAAAAACAGAAATAATATTTAATGAGATGGTATGTAGTATTAAAGTGTAATGCAAATTCTAGAAGAATGTAGAAGCTCCTTAAATAGAAGAATTGAAATGTAATACAAGTTCTAGAATATTCTAGAAAAACCTAAGATAGGAAGAAAAATCAAGAATATTCTACATAGGTAAAAATCTAGAACATTCCACATAAGTTGTGGCTAGTATGTTCTAGAATAATCTATGGGTCTATAAATACCCATGAATTCTACCATTTGATGTATGTAGCCAACATCTACCATTTGTATGAACCAACATCTACTACAACTAAAGACAACTACAACACTTCTTCCAACTACTACTTCTACATTCAACTATCTCTACATTTTCTCTATCCCATCAACTACTCCTTTCACAACCTTCAAATACTAACATGTAGAAAGGAGCGTATACGGTGATGTTAACCATGGAAAAGAGGGTGTACGGGTTTTTGCTTATGATAAATCGTCAGAGAGAAGACGGTATTTATAATTGAAGAGTATGATAGAGAAGACTTGGCAAAATCGAATCGTTGAAAGGACAAAGCAGAACTGACTACTCCGCACAAAACTTACCCACCTTTCTCACTCCAATA


Gene Sequence:
>Vu_19728(+)
ACATATGGACTAGATTCTCTCTTTTCCCGTAGTGAAACCAAATCCACAAGCTCCTTTTCATCACTCCTCTCATATTAGACCCACCCTCACACACCAAAACCGGATCAAACTCCTCTCATAAACACAACAATCAATCTTTTCTTCCCATGTGAATAAACAACGCACCACCAAGAACACACTTCCGCCATGAGCCAGTGCGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCCCAAGACTCTCCCTTCGCTCCAACTCCAGTTCCACTGCCCCTGATGTCCCCATGTTAGTTCTCTTCTTTTCTTTATCTCTCTCAAACAAACGCTTTCACTCAATCATCTATCATTCAAGACACTCTTCTTTTCCTTAATCTTCAAAGGAACATTTTCCGATTAACCCAGAAAAGGATAACTTCTTTTAGGAGTAAGCCTTTTTTATAAACACTCAGAGGCGCCAAAGGAGTCAACATAACTGTCTCCAACATACTATACTCCTTATAGAAACATTTATTAATTAAAATAACTATATAGAAGAGATCTGTGAAAACCTTTTTTTTTATGCCAGTTCGGAGGGTAATCATTGTTGTTTGCGTGATTTGATGAGTTCAGGTTAGACTACGAGGTTGCGGAGCTGACTTGGGAAAATGGGCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCTTCCAACAATCGCCGCCAATAAGTACACATGGGAGAAGCCTCGTGCCGGTGGCACTTTGGAGTCCATAGTGAACCAAGCCACGAGCTTACCGCACCGTGGAAAGCCAACGCTGAACGGCGACGGCGGCGTGTACGGGAACTTCCTGGTGCCGTGGTTAGACCCTCACGCCGCGACGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCTCGAAACGGGAGCAGAGCAAGCAGGGCATGGAGTCCGTCCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACCACGGTGCGAAGGGACAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTCGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGAGAACTTGGTGTGGCTTTCACTTCCACCTCTATCAACTCTCTCGATAACACCAGCTCCGCTAAGCACTGCACCAAGACCACCACCGTCGACGACCACGATTCTGTTTCCCACAGTAAACCAGTGGTAACCAACGACTCTCTCTCCCATTTCTTCATCTTATTTCTATTTTATTTTCTTATCTGATATTTCTTTATTATTATTTTCTTTCAACAATCCTATCAACCAAAAATAAAATCAACCTTAGTCAATTTCTAATGATTTTTCTAAGAATTTTACAAACTCTAATTTCTAATTTTTGCAACTCATGCGCATTTATCTTTGTCTATTTATCTTTTATATCTATATATTGCGTATGCCACACTTGTATTTTTTTTTTCTGTACACGTATGTATGGTATCTACTAACATACGTTTGTTCATGCATTACTCTTTTTTTTTTATCTATTTGTATTTCATGACAATCGTATACCTTTATTTTATTTTAAAATTTCCTTTTCTTTAACAGTATTTTTCTTTCGTTCCTAAAAGAAATATAAAACATAATTTTTCTTTGAATTTATTTTTACCGGAAAAATTCTTCTGATAATATTTTAAATTTTAGTCCCTTTTGTAGAAATATTACGCTCGAAATTTCGATAATTTCAGACTTATTGTAAAACTATAGTATTTTATTCATTTATTTTTACCAAGTTATGTATTACTAACATCTCTTAAGTATAAGAAAAAGTGCGTAAAAGAATGATTATAATTTTAAGCACTAAAAAAATAAAAAATTATTAGTTCCTTGTGGAAATAAATACGATAAAATTTAAATTTTTGAAGAGACTAATTTAATGAATTTTTTAGAAAATTAAAATAGTGATATTTTAGGTTTAGGAATATTTATTTAATGATTAAAATTTTAAAAGAGCAATATGGTACACATATAATTAATTTTAAGCGTTATACATGAGGATTTAATTCTATTTTACATTAGTTTTATGGTGAATTTGTAAAGGATGAAAACGGGGAGGACGAGAAGAAAAAGAGAGGAAATGGAAAATCTTCGGTGTCTACTAAAAGGAGCAGAGCAGCGGCTATACACAACCAATCTGAAAGGGTAAACGTTGAATAACGTTTGCAAGTTGCTATAATGATATTATGAGAACAAAATCAAGAATTTGTTGTTCATTGGTTCATTTTTGCATTGGCTTTTCAGAAAAGGAGGGATAAGATTAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGGTATATAGCATAGTTGCAACTAGTGGGGTGGGGTTTTGCTGAGATAATCATGATATTGTTTGTTTTAACTTTTTTTCTTTTAAGTATATTGTCATCGAAATCGTGATATTGCGTATGTGGTATCTGAGCCAATTATTTAGTATCTACTGGTCCCAAATCTGTGAGAGAAACAGATGCTATATACTGACATAACATATTTCTTTGCCATTTTCACTTTCGTAGGCTTCAAGTAGCGGTCCCGTGAGGATTCGATAGCCACTATAAATACCATTTCACACTGGATCTCTCATGTTTTTGCTTTCCATGATTCTTCCCAGTTACAAAATAAATTAATTTTATCAATTTCACGTAAACTATACATTTTAATTTTAATTTGTAACTACTTTTTATTTCTATCCAAGGCCCAAATGATAGGCAGTCCTGGACACAAAGGGAGTTTACATGGCCCTACCTCTCAAGATTTTTTCTCTTTTCTAAAAGTCAGTACCTATATACATAATACAATTAATTATTGTTGCTATTAATATTAATATTTATTATTTTAACCTGATTTTCAGCTCATAGATCTATTTTTTTGACCTCGATGCACGTACTTTGATCTTAATATATATGATATGTTTTTTGTTTGTTTTTATTCTTGACTTTTCTTATTTATGGTACTGTCCTTGTAGATAAGGTATCTACTTTCACGGCATTTATCATACATTATTCAAGTAAAGTTTAAATGTTCAAATTCTTTACATAATATTCTACTACCATTATTGTCCCTTTACAAATGGTCCAGCCATTACAGGTAAAATACCAAAAACTAATAACTGCTAAAAATGTCTTAACATATGTTATGTCATCGATTTAGTTAGTTTTACACTTATATAGCTACACCTGATACACTAAAAAATATTACGTGATCAGTATTCTCTTTGATAAAAATCTATGAAAGAAAAAGTGAGCACTGTGCTCTTGAAGTTTTTTCAATCATATATGGCTGAGAGTGGGAATTTTAGGGTGGTATGTGCAGTTATAGAGTCCACAAGAAGTCCAATTACTTGTTTTCATGCTCTGACAGGAGGCTGTTTGGTGAAGAGGCACCCAACTGCTCCCACAGGAAACCCTTTCCAGTGGTAGGCCCTCATGTCAATTATACAATAAACACTAAAACAACAAACATTTTCCACCAAAAACATACAAATCAAAGGCAAACATGAGGGAGAAAAGACAAAGAAAAAGAACCCACACTTAACTATATCATATATAGACAAGGGAAAAGAAAGAAACATGCAATGTTGACTATAGCTTATTTATGAATTTAATTAACAATTAGTTGAGTAATAGATTGATTATATAGTTAACTAGTTTTGCGTCGCTTGCTGTATGGAATTTCGTATGTGTTGAACACTAATTATGTATTATTTTACATATACATATATAGACGAGAATTTTCTTTAACTGATGCAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAGTATTTGAAGCAGTTGCAAGCACAGGTGCAAATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCTATGATGTCTCCGATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGAATGGGGATGGAAATGAACTCCATGAATCGTGCTAACATCCCTGCCATCCCTCCAGTCCTTCACCCTTCCGCCTTCATGCCGATGGCGGCGTCGTGGGATGCCGCTGCCGCTGGAGGTGGTGACCGATTTCAAGGGAATCCGGCCACCGTGATGCCTGACCCTCTGTCCACACTTTTTGGATGCCAATCACAGGTAACAGATATTTCTACGAATTCTCAAACGAAGCAATAAATAAAAAATATATATTTTATAAACTTTCTTCTCTTTAACTACTCTTTTTAATGTTCATTGTTTGATACGGAATGACATCACTCTAATGTTATGAACCTAAAATTATCCAAACCTACTGTTGATCCTAGAGATCGATGTGCCCATTTAGTTTATTTGGCTTTTTTTCCTATTATTTGAATAATATTCTACTTTGATTTTGTATTTGGTGATGAAGTTTAATCCTGTGTATTTTTGTATTGGTCGTATTTATTGCGGATAAGGTAATAGTTCAAATTTCTAACAATGATTGATGGCAACCTGGTTTTTTTGCTGATTTGGGTGGGTACTCAATTTGTGAGGCACGAATGATAAAGGTTGTAGAAATCAGTCAAATCGAATTGATTGCATCATTAATATTGGGCACTGGTATGTTAATTAGCGCTTTGACCTCATCAATCAATCTCCTAGATCGCAATCTTACAATGGAAATCACCCTTTTGATTATTCATTGTGCCAATTGAAGAGTAGACGCTAAGTTAGAATATACCTCCGTTTGGCATTTGGAAATGTATAAATTATTTGGTTCAAGATGCTTTTAAATGTGTTTAGTTATTTGATAAAACAATGATTGTTTTTGTTAAATCTGTCTAAAATATAGATATAATTAATAAAATCGAATAATTATTTGCAGCCGATGAACATGGATGCCTACAGTAGACTTGCTGCGATGTATCAGCAGCTGCACCAGCCTCCAGTTTCTGGTTCCAAGAACTGAGCTAGCTTCTGGGTAGTATTCTTCTGGTGTGATAGTGTTGAGCTACAAACAAGAATGTCCATAGTCATTCTTTGTGAGAATTTTAAATGTGTATATTAGCTCCAAAGCAAGCGAATAGCACTATAGATATACACACTCTTTTCTTATTTGGGGTTAGTAACTTGTTAAGATTAGGTGGCTTTCTTGGTTATTTTACCATCATATGTATGTTCATACCATTGCAACTTGTATAACGTCTTCTGCTATTTTATTGAATAACGGCTTTGGTCTGATTCACACCATATATAATAGTAACTTCAATTCACATTATACCA