People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19725 LG5 11757784 11758272 PREDICTED: LOB domain-containing protein 25-like isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 11758151 missense_variant p.Gly123Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19725.1
MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRMAEGGASSLGQSPGYYYPSPWNNDPLGDGYHRGDNNM*


CDS Sequence:
>Vu_19725.1
ATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCGTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAATTCTCTAGCCTATGAAGCTGAGGCAAGGATAAAAGATCCAGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACTTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATGGCTGAAGGTGGAGCTTCCTCTCTGGGTCAGTCTCCTGGTTATTACTATCCTTCTCCCTGGAACAATGATCCACTTGGCGATGGTTATCACCGAGGTGACAATAATATGTGA


Promoter Sequence:
>Vu_19725::LG5:11755784-11757784(+)
ACACTTTTGTTATGTATGTTTTTAATAATACGGATAATTTATTGTGGAAAATATTATTTTCCATTTCCATAATTTCATTTATATATATTCTTAATTTTAGTTTTTTCTATTTCAATAGAATTTGAGGAGAGAGAACAAGCTATCCATTTGAATATTCTGGGAGTAAAAGCTGAGTGCAATTATACAGACATACTAGAATGAAAAGATAAGTACCATGTGAAGTTGATTATATGTGTGCCTTGTCTAAAAGAAAATAAATAAAAAGAAGAAAACAGAACCGAAGAGATGAAAATAAAACCAACCTTCTGTTTCATTACACCTGCGTAACAAATGCTAAGGAGTATGTTTCATCGTTGGCTCACTTTCTGTCCAATTTGCACTTATTCTGAAATATATATGAGGAACTACTTAAACTAATGGGTCAATTCCTAAACCCTTGCTTAAGAGAAGGAAGAACAAGGTTTGCATTGAACTACCACAAATAAACTAGTTATAAATACAAAGGTATATGATATCCCAGAATATATATAGTTGTTAGTGGGACAGATTATTACAGTTAACCTTGGCTACTGTATTGGGTATTATTATAAAGGTTGTGTCATAGTCATTCTTTTTCACTTGTAGCCCCATTTATTGCACTTGTCTTTTGCTTTCTTTTCCACTCTCTCACTGGAAATGCTCTTTTTCTCCTATACTCTTTGTTGTTGCTTATCTAGTTGTCATTGTATTTGCGGGTTTTTCTCATCTTGTCCTGCAAGTAACTAGGGTTTTCCGTTTTCTCTCTGAACTCTCACATCCAATAGTGAATTCCCAAGACTTCTATCCCGGTGCTTGTAGACTTCTTTTTCACTGGCATTATTAAAGAATAGATCTTGAAAGACCCTTCTGCAAGAGAGAAAAAAAAAGGTATTGATCTAAATTACAATATCGTTTGTTCAATTAAACCTAGCTAGCTGTACAAGGTATAGTTTTTTCCAATTATATGATTCTTTTTCTTCTTTCTGATTGGTGTTTTCCTAATAAATTTATGTTCTGAGGCTTGATCCAGGTTTTGGTTTTTGGAAATTTTTGAAAGGAATGAAATTCTGGGTGTGTGAATGATAGATATATCATCCTACTGAAAGAGTTGAAAATTGAGAAAACTTCCACGCGTCATATCCACCAATAAGCTGAAAAGATTCCTGGTAGGTGTACCTTTCTTTTAGCCTCTCCAACTGAAAAACACAGAAGGCTAGACCTAAGGAGAGATGAGGAGAGACAGGGAGAGAAATTCAGGGAAGAAATTTATTAGTCTGAGATGAGGAAATCAAACACACCCCAATTAATAATACTGTCGTCTCACATGTAGAAATAAGGGTTCTGGGTAGTGTAGTGAGAAAATCTATAAATAGGGCCTCCTCTTTTCGGTTTTTCCAATCCACTAATTCAACAGTGGACTTTGATTCAACATAAAGACGGCTTCGGGATAAAAAGTGAGAGAAGTTAGAACAGTAGTTGAAAATGTTATTACCAAAAAAGGAAGTAGCAGGATGTGCTTTAGGCAAGTAAAGTCTCCCTAACCCTAGTTTTTTCCATGTTCAAGCAAGTCTAGACACTAAATTTTAGATTCTATACGATCACTATACGATTAACTAAGCCCGCTTTAGCTTTTAATCATTTTCAAAAAATGGTCTGTTGCTAATTTTCTTTATATATAGCTTTATTTGCTCCCACTTTAAAATTATATTCATGAGATGCATTGTATTTAATCACAGCATATACGTGCTTTTACAGTATTCAAACTGTAATAGATTCTTTTGTGCTGTATTTTGATTTTCATGTTAGATAATGTCTTTTGTTCATGAGTTGGAGTACCTTTTGTACTCTACTCTCCTTTATGAATTTCCTTGTTTCTGATATAAGAAAAACTGTAATAATAAATAATGATGAAATTATTCTAAATTTGAGATTTTGTATTGTTTTTTTGTGTATGAAATATTGGGTAATTGCAGTGAAGATCA


Gene Sequence:
>Vu_19725(+)
ATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCGTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCTCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCGAGCAACGTGAGCAAACTCCTGAATGAAGTCCAACCCCACCAAAGGGAGGATGCAGTGAATTCTCTAGCCTATGAAGCTGAGGCAAGGATAAAAGATCCAGTTTATGGGTGTGTTGGGGCAATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACTTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATGGCTGAAGGTGGAGCTTCCTCTCTGGGTCAGTCTCCTGGTTATTACTATCCTTCTCCCTGGAACAATGATCCACTTGGCGATGGTTATCACCGAGGTGACAATAATATGTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1326155