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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19693 LG5 11236392 11239761 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 11236717 intron_variant
C/G 11236776 missense_variant p.Gly183Ala
A/G 11237385 intron_variant
C/A 11237395 intron_variant
T/G 11237483 intron_variant
A/G 11237570 intron_variant
A/T 11237579 intron_variant
G/C 11237601 intron_variant
A/T 11237686 intron_variant
G/A 11237828 intron_variant
C/A 11237835 intron_variant
A/G 11237836 intron_variant
C/T 11237864 intron_variant
A/T 11237876 intron_variant
C/T 11237887 intron_variant
T/C 11237892 intron_variant
T/A 11237939 intron_variant
G/C 11238097 intron_variant
C/G 11238141 intron_variant
A/T 11238149 intron_variant
G/A 11238164 intron_variant
G/T 11238878 intron_variant
G/T 11238922 intron_variant
G/T 11239105 intron_variant
A/T 11239282 intron_variant
C/T 11239545 intron_variant
G/T 11239569 intron_variant
A/G 11239575 intron_variant
G/A 11239599 intron_variant
T/A 11239645 intron_variant
C/A 11239655 intron_variant
T/C 11239668 intron_variant
C/A 11239673 intron_variant
T/A 11239700 intron_variant
G/T 11239725 intron_variant
C/T 11239727 intron_variant
G/C 11239734 splice_region_variant&intron_variant
G/T 11239749 missense_variant p.Gln5Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19693.1
MSKQQNDDNLILTEDHKTVKLADFGLAREESLAEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDVYSFAIVLWELIHNRLPFEGMSNLQAAYAAAFKSTRPSAEDLPDELALIVTSCWKEEPNDRPNFSQIIQMLLRYLITISPADPVAPMRISSSKNAVLPPESPGTSALMARRDDSGETPKVDIEGRSSPRALCLMYGNDMDNK*


CDS Sequence:
>Vu_19693.1
ATGTCCAAGCAGCAGAACGATGATAACTTGATCTTGACAGAAGATCATAAAACTGTTAAACTTGCAGATTTTGGTCTAGCCAGAGAAGAGTCCTTAGCAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAACTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAACATTACAACCATAAGGTGGATGTCTACAGTTTTGCTATAGTGCTGTGGGAGCTCATCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGAGTACAAGGCCGAGCGCTGAAGACCTCCCTGATGAATTGGCTCTGATTGTGACTTCTTGTTGGAAAGAGGAACCAAATGATCGACCCAATTTTAGTCAAATAATACAGATGTTGCTTCGATATCTAATTACCATTTCCCCGGCCGATCCAGTTGCTCCAATGCGTATTTCATCATCCAAAAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTCGAAGAGATGATTCTGGCGAAACCCCGAAAGTTGATATTGAAGGCAGGTCTTCACCTCGTGCGTTATGCTTAATGTATGGAAATGACATGGATAACAAATGA


Promoter Sequence:
>Vu_19693::LG5:11239761-11241761(-)
TTTCTTTAGCAAGTCCAATCCTCCTCCCCGAGTCCTGTTCCTGAAAAACACATAGAGATGGGGAAAACATTGCAGAACAATTGAGATCAGAGGTTAGTTTCTTTATGGAGAGAAGACTGGCTGAGAGTTTGGGAACATGGAGAACGTTTTTAAGCATAAGGTTCGGGTTTACTTGGATATTACCATATCCTGCAACAGTAGCTACTGACCCATTTGCAACAATAATTTTTCTATTACTTGGTGAGGGTGTATAAGAATGAAACAAGTGGAATAAATGTGTCATATGATCTGTAGCTCCCGAATCCACAATCCAAGAGTTCACATTATATGAGGTATTCATACAAGAAGTTTTACCTGAGAAAACAAGAGAACATGATCCAGAGGGTTCCTCCATATTCCCCAATAGCTTCTTCAATTTCTTTATTTCTTCCATATTGAAACTGTCTACTGCTGGAGATTCTTTAATCTCTGTTTGTGTTATGTGCACTTGGGACTTTTGTTGTCCTCCACGATTCACCCACTCCTTTCCTGGAGGTTTGCCATGCAATTTCCAACATTTCTCCCTTGTGTGTCTCGGTTTCTGACAATAGGTGCACCATAAATTATCTCTATTTCCTTTCCATAGAGAATTAGGAATTTGCTCATTTCCTTTCTGCACCAGTTCAGGTTTGGTAAGTAGAGCAGACCCATCCATTGGTTGAGACTCAAGCATTACACTCCTTCGACTTTCTTCTGCACGAACAATAGAGATGGTTTCTTCTAGTGAAGGAGTATCCTTTCTCCCTAGAATTTGCACTCTAACTTGATCAAATTCAGGATTTAGTCCTGCAAGAAAATCATACACACGATCCTTCTCTATGAAATTCTTCAAGAGGATTGCATCCTCAGCACACTTCATTTCAAAAACTCTGTAGTGATCAAGTTCCTGCCATAGATTCTGCAACAGTGCCGCATATTCTGTGATTCCTCTGCTTCCCTGTTTTGTGGCTGCAGTTTTTATTTTGATTTCATATACTTGGGCAGCATCATTGGCTTTAGAATATGTGCGGTTTATGGAGTCCCAAATATCTTTAGCTGTATTAAGAAACATACAAGTGTCGCTGATGGTAGCTTCCATGGAGTCCCACAACCAAGACATAATCATGGAATCTTTTTCATCCCATGCTGCAAATGCTGGATCCTCCATGCTTGGACCATTTTCAAGGAGATGAACCAGGCATCCTTTTCCCTTGAGATAGGTTCTAACAAACTGGGACCATTTGAGAAAATTTTTTCCATCCAACCTGTATGACGCTCGGAGACCTTGGAGTTCTCCATTTTTGTGTGAAGGACTAGAGACTTCTCTACTTGATGTAGCACCAGACATTGTAATCGGATGTTAGGTTAACACAGCGGAAAGAATAACAGCAGCAATTAAGGCTGCCCCTTTTTTTTTTTTTTTTTTTTTTTTGACGAGAATGGCAATGAAGGCCAGCAATAGTTGAGGAACGGCAATGAAGGCCGTGAGACAAAAAACAAAGACCAGGGCTCCAGGAAAAACCTAGAGCTCTGATACCATGTTGTAAAACAGTAGTAGGATGCTGGAATTAATTATTCTCTCATTCATACTTTTGAAACAATACATAAGTGTTTAAAAAGAAACAAACTATTGTCTAATTAAGGTAAAAAATCTCCTGAAATAAAGTCTCTAAATCAGGAGATATCTACCCAATAATACCTGATCTTAATAAAAGGAAATCTGCCCAATAATTACTAATCCTAATCCCTTAATTTTAGGGATTAGACATAATTGCAGGATTACACATAATTGCTATATTAATTGCACAATAATTCACATATTCTGACAGTTAGCTTTCCCTTTACCTTTTAAAGTTCTGCGAACAAGCTGGGCCCATTTCAAATAATTCGTTCCATTTAAGCGGTAGGTAGTGTTGAGGTTCTGGAGTTGTTCCTGATTGGTTTGTGATGCAGTAGGCACCACTTCCATAGTTTGGTCTGCC


Gene Sequence:
>Vu_19693(-)
ATGTCCAAGCAGCAGAACGATGGTAATCCAGTGAGACGAGATTTGAAAGGAAAAGCACTACAAAAGAAAGAACACTGCAGCAATGAAGGATATAGTGTAGAGTTGTGTTGGCAACAACAATGAAGGCTGTTTTGAAAGAGAGAGTGGCAGCAATGAAGGTTGCCGGCTAGGGTTTTAGTGAGCAGTTAGAGGCGGCTCCCAGATGTTGAGAGCTCTGATACCATCTCATAATTTAGGGTAAAATGTATATGTTATTAGGCTGTTATAGTGTCCCTTGGGGGATGACTATATATAAGGGGAAGGTATCTTGAGACAGACACGATTTTGTATCTCTGTTGTGGACTGGTTTGTACCTGTGAGAAGGGAGATAGTTCCCTTGGATGTCATTGAACATTCTCTTTGTTACCCATATAATAATACAAGGTTTTTCTACTGTGAGTGTGTGTTGTGTGTTCTGTCATCAGAACAGAGGGAAGGCTTGGTTTCTTGTCAGCAAGAAACCTAACAAGATTCTTTTTCCATTACTTGTAAGAGTCACTTTTCTCACATTGTCCTCTTTGTTTATGCCCTTTTTGCTTTGGTAATTACTCTCATTTCATACTTTCAAGTTGGTGACTCTAGTAAGATAAATTTCAAGATTTGAGTCAATTAAAAATCGGCTCAAAACCGTTCTCCAAAATGGGAATCTACTAGAGTTTCAGAATGACAACATCAACTCAAATTCAAGAGTTAAAGAATAAGAATGAATTTTAGTAAAATGTAAAGGACCAAAAATATACTTTTAGCGGATGAAAAAATGTAGGCAATTCCTTCATTCACTTCTAAGGTGTTCGATGGACCATCGAGATAATAAATATTTGGGTAAAGAAACAGCTTCATATTTCTATAGAACTGATGTTACAAAGAAACAGCTTAATATCTATCAAGGAATATCTATCTATTTTACGATCTAGTGGAATTCTGATCAAATTTTCTGTTTTCATCTCAGATAACTTGATCTTGACAGAAGATCATAAAACTGTTAAACTTGCAGATTTTGGTCTAGCCAGAGAAGAGTCCTTAGCAGAGATGATGACTGCTGAGACAGGGACATATCGTTGGATGGCTCCAGAAGTACTTCTTAATTGTCAAAAACTGAACAATTTATTATTTTTTCAGTTTGGTGATCCATGTTAGTAATTTACCATTTCATCCTTGTTTGGTTACAGCTTTACAGCACTGTCACTCTAAGACAAGGGGAGAAGAAACATTACAACCATAAGGTGGATGTCTACAGTTTTGCTATAGTGCTGTGGGAGCTCATCCATAATAGGTTGCCTTTTGAAGGCATGTCAAATCTACAGGCTGCATATGCAGCTGCATTTAAGGTTGATAACATTCTTTTCATCTGGTGCTTACCATAATGAATTATGCTCAAAGTCATAACATTTGAATAATTTGTTACCTCTAGCAAGCCATCTCCTATCATAACTAGAAGGTATACGAAATTAAAATTAAAACTGCTGAAACATAGCTTATGCACAAATTAAAAGTAAAACATTGGAGAAGCTATACGAAAGAGCTTCTATATCAGTTCATGCTTAAACTAATTTTAACTCATGTAAAAATCAATTAAATTTTGGTCTTGTTTTTCTTTTCCAAAACTTATGCAGAAGTCTGTTGAACCAGACCCTTAAACCTTTATTTCGAGGTTTTAGTTCACTCTGATTTATGTTTTCAAAGATTTATGCATGGAATGATCGCATGGAATGATCACATGGGGAGGAACTAAAATGTTGTGTTTACAACTCTGTGTTTAAATATTTGAAAACAAAAAGCATAAAATAGAGTAAAATTAAGATTTGATTATTACTTAATGTTGGAAGTCTCATATTGATTAGATATATGGTCAATTTATGAAGTATATAAATGGATGCAAACCTTACTGTACAAGCTGGTTTTGTAGGATTGAGTTAAACTTAAAGTCCACTTCTTAACATGATATCAAAGTCTTAGGTTAAAGCTTATTCTAGCAAATTTCTTGTTTGTTGGGCATTTTGTTCTAACCGCTATCAGAGAACCCATTAATGTCTAGTTCCATGCTTAAGATGATATACCTCGGCGTGATAGGGGTGTGTTGAAAGTCTCATATTGACTTAAAATCCGCTCGAAATGATATGTCTCGAGGGGTATGTTAGAAGTCTTACATTAGTTTAAAATCAATTTCTTAACATGATATTGTGGGTTGGAAGTCCCACGTTGGCTTAAAATCCATTTCTTAATATGATATCAAATTCATAGGTTAAAGTCTATCCTAATAAATTTGTTGTTTATTGGGCATGTTGTTCCACTTTCTATTGGGCCTTTATGTTTAATCTCATACTCGAGATGTATATATCAGTTTTGTAGAGTTGACTTTAGTTTAAAGTCCACTTTTTAACACTTAACAAAAGGCATTCTTTCAAATCATGTAGATCCTTCATTTTATATAGCCAAGGTTAATGGCATTTACTCTATCACCATTGCTCTGGTTTGGTTATGAATTAGTCTTGTTTCTTATGCTGCAAGAATATCGCCCCTTTCCAATATATAAATTATTTGGTACATCATATATAGTGTAATCTTCAAGAGTTTAAATTGTTATTTTCAAGGTCTTTATGACTACGATCATAGTTTGATATGTTTTTATCATTGAGTGTGCTGCATTTTTTCGTGGAGTTTACTAAGGATTCACTATATAAATATTGACTTAACTGTTTCAGAGTACAAGGCCGAGCGCTGAAGACCTCCCTGATGAATTGGCTCTGATTGTGACTTCTTGTTGGAAAGAGGAACCAAATGATCGACCCAATTTTAGTCAAATAATACAGATGTTGCTTCGATATCTAATTACCATTTCCCCGGCCGATCCAGTTGCTCCAATGCGTATTTCATCATCCAAAAATGCTGTATTGCCACCAGAATCTCCAGGTACAAGTGCTTTAATGGCTCGAAGAGATGATTCTGGCGAAACCCCGAAAGTTGATATTGAAGGCAGGTCTAAAGGGTGTTTCTTCTGCTTTAATCAATGTTACTGATGACCACACGATGCTGACATAGATGGGGCTGACCCAGATCACGGTGTGGCAATCTGAATAAATCCGTCACAAAATGTTGCAATTAGAATTTTAACAAGAAAGCTTTTATTCAATGACGCAGGTTAGTTCACCTTCATTCCATGTTCTCAGTAAGAGTACGTAGCACGCCATTCTCTTTTAACATTGGGTTTACTCACTTCTAACCAACTGGGGTTGAGGCTGCTGAGATGTATTGTTGTACAATATGGTTCATCCAAAGGTCTTCACCTCGTGCGTTATGCTTAATGTATGGAAATGACATGGATAACAAATGA

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