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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19659 LG5 10669603 10672519 PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300 isoform X1
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 10669621 synonymous_variant p.Thr517Thr
T/C 10669623 missense_variant p.Thr517Ala
A/C 10669624 missense_variant p.Ile516Met
T/G 10670057 stop_lost p.Ter397Serext*?
T/C 10670137 splice_acceptor_variant&intron_variant
T/A 10670199 intron_variant
A/G 10670343 intron_variant
G/C 10670476 intron_variant
A/C 10670479 intron_variant
C/G 10670511 intron_variant
A/T 10670521 intron_variant
T/G 10670605 intron_variant
A/T 10670800 intron_variant
C/G 10670856 intron_variant
T/A 10670863 intron_variant
T/C 10670867 intron_variant
A/T 10670898 intron_variant
A/T 10670902 intron_variant
A/T 10670914 intron_variant
G/A 10670916 intron_variant
G/T 10671289 intron_variant
A/T 10671301 intron_variant
G/C 10671323 intron_variant
A/C 10671325 intron_variant
T/C 10671336 intron_variant
G/T 10671359 intron_variant
T/G 10671360 intron_variant
A/G 10671362 intron_variant
A/G 10671377 intron_variant
C/A 10671858 missense_variant p.Gly221Val
A/T 10671860 missense_variant p.Asn220Lys
C/T 10672240 missense_variant p.Asp94Asn
A/T 10672244 synonymous_variant p.Pro92Pro
G/A 10672359 missense_variant p.Thr54Met
T/A 10672447 missense_variant p.Ile25Phe
A/T 10672448 synonymous_variant p.Val24Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19659.1
MILQELLPFSEDGNLVVLNGQNQVIWSTSVSNTSTNTTAQLSDDGKLELTETTTGNSLWDSFQHPSNTLLPQMKVSSNRTGRGVGLTSWKNPSDPSVGSFSLGAVERGKIVEVFIWNETRPYWRSGPWSGGVFTGVDHMASAYLNSFTVVDGEGYYKANQENISEFGIYVLNSQGQVEEKYWDDEKKELEVSWTSKESDCDVYGVCGSFAICDAQSQGTNGSPICSCLKGFEPNNKEEWDAQNWTSGCFRNTPLQCERAKDQNTTMDTNEDQFFELQKVKVPDFSEWSSAEPETCRSQCLKNCSCVAYSHDDGIGCMSWNDNLLDIQQLSNRGLHLYVRVDPSELEHDFGMARIFGRTEDHANTNRIVGTYSYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNTSFYDDEHSLTLIGFTWAQWKEGNILSLVDSEIYDPNDHEDMLRLIHIGLLCVQELASDRPTMATVVSMLNSDVVFLPPPSQPAFIRVQNVVNSEPSEESQRVCSVNTISSITEVYGR*


CDS Sequence:
>Vu_19659.1
ATGATTCTTCAGGAGTTGTTACCTTTTTCTGAAGATGGCAATCTTGTGGTGCTGAATGGACAGAATCAAGTTATTTGGTCAACATCTGTGTCAAACACATCTACCAATACGACTGCCCAGCTTTCAGACGATGGGAAGCTAGAACTCACAGAAACCACAACGGGGAACAGCTTATGGGATAGTTTTCAGCATCCTTCAAATACATTACTGCCCCAAATGAAAGTTTCAAGCAATAGAACAGGTAGGGGAGTAGGACTTACATCATGGAAGAACCCTTCTGATCCCTCTGTTGGGAGCTTCTCTTTGGGTGCTGTTGAACGCGGAAAAATCGTTGAAGTGTTTATCTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTGGTGGGGTCTTTACGGGGGTAGACCACATGGCCAGTGCATATCTAAACAGTTTTACGGTTGTAGATGGTGAAGGCTATTATAAAGCTAACCAAGAAAATATATCTGAATTCGGAATCTACGTTCTGAATTCTCAAGGCCAAGTTGAAGAAAAATATTGGGATGATGAGAAGAAAGAACTAGAAGTTTCGTGGACGAGTAAAGAATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTCGCAATCTGTGATGCACAGAGCCAAGGAACAAATGGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTTAGGAACACACCTTTGCAGTGTGAAAGAGCCAAAGATCAAAACACAACTATGGATACAAATGAAGATCAATTTTTTGAACTGCAAAAGGTGAAAGTTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCAGAAGCCAATGCTTGAAGAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTCTTGGAATGACAATCTACTAGACATCCAACAACTCTCAAATCGAGGACTTCATCTCTATGTTCGTGTAGACCCTTCTGAACTTGAACACGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCATGCTAATACTAATAGGATTGTTGGAACATACAGTTACATGTCTCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGCTTTTATGATGATGAGCATTCTCTTACCCTTATAGGATTTACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAGTTGATTCAGAAATATATGATCCTAATGATCATGAAGATATGTTAAGGCTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCGGACAGACCCACAATGGCTACAGTAGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAACGTGGTTAATTCAGAGCCGTCTGAAGAAAGTCAAAGAGTTTGTTCCGTGAATACAATTAGTAGTATTACAGAAGTCTATGGTAGGTAG


Promoter Sequence:
>Vu_19659::LG5:10672519-10674519(-)
TCATTCTTAGCTCTTAACCGCAACTCATAGTCACTATACCTATAATACAAATGATCATGATCCAAAAAATAATCATGCAAACTAGAATGGTAGAAGTTTTCATTGTGGTGAAAACTTCTAACGTCTACACAAAGTAGAGTATAAATGTATGCTTGCATGTATGTCTTTTTTCTTATTATTTTTGTCAAGCGTTGTGCATTTAATGTTTTGAATTACGTGTTTAAAACAATTTTGTCAATTTTTCTATACATGTAAATCCTTTAAGCACTTTTCAAAAGATAAGTATTGATTCATAAAGGTTTCATCGTTTAGTATAAGGCTATTGTTTAGCCTTTGAAAGGTGTTTACTAACAAATTATCGTTTAGTATAAGAGCGCGTTTAGAAAATTATTATTCAACATATTATTTTTGAAGCGCTGTTAATAACTTTAGCGCGTTTACCGAAATCATCATGTAGTACATTATTGTATTCTTTAGTAAAATACATTAAGAGCACGTTTAGCAAAAATGCCATGTGTCACATTGATGCATTTACTAAGATATGGTTTAGTCTAGTGGTCCTTTCATAAAGCATCATTTAGTAATAGCATGTCTACAACAGGATTGTTTGGTCCCAAGGCGTTTACCGAAAATAATCTTAAAATTTGATTACTTAATTTTTCTATAAATTAATCAATTTTTTACTATAATGGTATTTGTATCTTCTATTTTCATTATTTCTTATAATCCTACATTAATATTTCTCTTTTTCTCCCATTAACTCCTACTTTTTGTAGAGTATTTGGAAAAAGGAAATTAGTTTTGGAAGTTTAGATTAAGAAAGAGAAGAAGAAGAAATTATTAATTAGCATCTCCTCCATTATTTCGTACTTAGTTTTATTTATCATTTTATTTCTTTCTGTCAAAATTTATAATTTTCAAAACATTTTTTCTTAATGTCTACACACTACCAAATATTTATACACTTATTTATTTTTAAGTGATCTTTCTTTTCTTTTTCTTTTTTTTCTGTATTTTCGTCTTTCTACGTAATAAATATTAATAAACGAGAGGAGAAACTTGTGAGCAGCCTTTAGTTCTAAAAACTAATTGAGTTGAAAAATTGTTTATTGAAAGATTGATATTAGTTTGAAAGTGTCCATTAACTTTCCTAGAAATAAGCTAGAAATTGCATTTGCTTTGTGATTGTTAAAATTTGAAATTGAGGTATATCCTACAGATTGGGCCAATTTAGATTTAATCTAGTTTTTTAAACGTGGGTTAAGTTAAACTGTTTCACCTAATTAACAGTTAGACGAGTTCAAATTGAACTGAAGGTGAACACCAATCTTTTCTTATATTTTCACTATTTTATATAATTTTTTTATTATAATTATTTATTGTTTATAAATTAACATTTTAATTTTTAACTATTGTATTAAAATTAATATTTAGTGAAACACATCAACATTATTTTATTATATATACTATAAAATAAATAGTCGTGTGCAATATTTTTTTATTATACTATAATATTATATAATATAGATTGAGAAAACAAAACCTTTTTTGATGATAAACACATTTATCTAAAGTCAGTTACAAAAATTTTACCTTGAACTAAATTGCTTTTAAGTCAACCAATAAATCACTTTGGCCCACCTTGACATGTCCGAAGGTGGAGACAGTTCAGTTGAAGATGGAAGACTCAAAAAAGGAGGAGTGGCCATTGACGTCATATTAGGAATAGATCTTATTCTATGATCGGAATAATGGGTATCGGCAGCCATGGAAAACTGTCCTTTGTTTTGTTCATGTGTTTTTATGTGTTGGACGTTGGTATTGCCACAGAAAGCATCACTTCATCACAAACCATCAAGGACTTAGAAACTCTAAGCTCCAAAGATGGTAACTTCACGTTCGGGTTCTTCACCCCTCCAAACTCCTCAGACCGATACGTTGGAATTTGGTGGAAGTTTCAATCCAAGTCGTATGGGTTGCTAACAGAAATCGATCACTGA


Gene Sequence:
>Vu_19659(-)
ATGATTCTTCAGGAGTTGTTACCTTTTTCTGAAGATGGCAATCTTGTGGTGCTGAATGGACAGAATCAAGTTATTTGGTCAACATCTGTGTCAAACACATCTACCAATACGACTGCCCAGCTTTCAGACGATGGGAAGCTAGAACTCACAGAAACCACAACGGGGAACAGCTTATGGGATAGTTTTCAGCATCCTTCAAATACATTACTGCCCCAAATGAAAGTTTCAAGCAATAGAACAGGTAGGGGAGTAGGACTTACATCATGGAAGAACCCTTCTGATCCCTCTGTTGGGAGCTTCTCTTTGGGTGCTGTTGAACGCGGAAAAATCGTTGAAGTGTTTATCTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCCTGGAGTGGTGGGGTCTTTACGGGGGTAGACCACATGGCCAGTGCATATCTAAACAGTTTTACGGTTGTAGATGGTGAAGGCTATTATAAAGCTAACCAAGAAAATATATCTGAATTCGGAATCTACGTTCTGAATTCTCAAGGCCAAGTTGAAGAAAAATATTGGGATGATGAGAAGAAAGAACTAGAAGTTTCGTGGACGAGTAAAGAATCGGATTGTGATGTTTATGGTGTATGCGGGTCGTTCGCAATCTGTGATGCACAGAGCCAAGGAACAAATGGCTCACCAATATGCAGCTGTTTGAAAGGGTTTGAGCCAAACAACAAAGAGGAATGGGATGCACAAAACTGGACTAGTGGATGTTTTAGGAACACACCTTTGCAGTGTGAAAGAGCCAAAGATCAAAACACAACTATGGATACAAATGAAGATCAATTTTTTGAACTGCAAAAGGTGAAAGTTCCAGATTTTTCTGAATGGTCTAGTGCTGAGCCAGAGACATGCAGAAGCCAATGCTTGAAGAATTGCTCTTGTGTTGCGTATTCTCACGATGATGGGATTGGTTGTATGTCTTGGAATGACAATCTACTAGACATCCAACAACTCTCAAATCGAGGACTTCATCTCTATGTTCGTGTAGACCCTTCTGAACTTGAACACGGTATGCTACGTCTGCTCAAGCATTTTAAACATATTTTTTACGGAATTCCCTGTATTTTTTATTTAATATTTTTCCTTGACATATGAAGGGAAGAAAACAATAATTATCATTATAGTAACAGTGATAATAGGAATTCTGATCATTGTCACTTGTGCATGTATAATATGGAGAAGGACTTCCTGTCGCCCCGGTAAGACATCATCTTCAGAATTTGGCCTATAATTTAGTTTTGTTTCTACTGGTAAAGGAGCTAAGCTTACATTTTCTTTATCACTCTGGCTAAAATATGTTACTAAATCAAATCAGCAATGAAAACGGGCAAGAAAGGTTTCATATGTTTCAAGAATGATGAACCATTAGAACACACAGGCAACAAAGAATTTGAAGAACTATCACGAGTTAAACTACAGGAGCTGCTCCTGTTTGATTTCGAAAAGCTTGCAACAGCCACAAACAACTTCCACCAGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTCTACATGGTACCTTGAAACACAGTTATCATATTTGAATCAATTAATTGTTTATAGTTGTCCTCAGAATTATTTTTTTTTTTTTTTTCAGGGGAAACTGCAAGATGGACAAGAAATAGCAGTTAAAAGACTTTCTAGAGCCTCTGGACAAGGTCTAGAAGAATTCATGAACGAAGTTATCGTAATTTCCAAGCTTCAGCACCGTAATCTTGTAAGACTTCTTGGCTGCTGTATTGAAGGTGACGAAAAGATGCTACTATATGAATATATGCCAAACAAAAGTCTAGATGTGCTTATTTTTGGTTAGTTCTATGATTCCTTCTCTAGTATTTGTCTCATATATCCAATATCTAATTCTGTACTTCTTTGATTATCTTTATTTAGCACACAAATATCAAGATGTAAACAATCATTTCATAACCAGTTAGTTTTCTCGAAAGCATCCAAATCAGTGGTTTAGATGACCGTGCTTCGTTGTTTCATCTTTTAATGTTATGTTCACAAGAGTATAATGCTGCCATTACTTTTTAGATCCAACAAAACATAAACTCCTAGATTGGAGGAAGCGCTGCTCTATAATAGAAGGAATAGCTCGAGGGTTGCTTTATCTTCATAGAGACTCTAGACTAAAAATTATACACAGAGATTTGAAGACAAGTAATATCTTGTTAGATGATGAACTGAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAAGAACTGAAGATCATGCTAATACTAATAGGATTGTTGGAACATAGTAAGTATAATTTTTTTATCCATTATCTTAAGAAAATTATTGGAGAATCACGGTTGACATTTGAATGCAGCAGTTACATGTCTCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCGGATGTCTTTAGCTTTGGTGTTTTGCTGCTAGAGATTGTTAGTGGAAGAAGAAACACAAGCTTTTATGATGATGAGCATTCTCTTACCCTTATAGGATTTGTAAGTCACAACAATTTCTAACTCAATAATAGGAATCTTTGCTGAAAGCTAATTGTTTTTGTTTTCATTTCAGACCTGGGCACAGTGGAAAGAAGGCAATATATTATCTTTAGTTGATTCAGAAATATATGATCCTAATGATCATGAAGATATGTTAAGGCTCATTCACATAGGACTTTTATGTGTACAAGAACTTGCTTCGGACAGACCCACAATGGCTACAGTAGTTTCTATGCTTAATAGTGATGTTGTCTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGGTGCAAAACGTGGTTAATTCAGAGCCGTCTGAAGAAAGTCAAAGAGTTTGTTCCGTGAATACAATTAGTAGTATTACAGAAGTCTATGGTAGGTAG

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