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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19602 LG5 9791803 9795294 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 9791848 missense_variant p.Met16Val
G/A 9791853 synonymous_variant p.Leu17Leu
T/C 9791961 synonymous_variant p.Cys53Cys
G/A 9792106 missense_variant p.Val102Met
T/C 9792159 synonymous_variant p.Phe119Phe
C/T 9792252 synonymous_variant p.Tyr150Tyr
A/G 9792419 missense_variant p.Glu206Gly
C/T 9792540 synonymous_variant p.Gly246Gly
G/A 9792667 intron_variant
A/T 9792690 intron_variant
A/G 9792815 intron_variant
T/G 9792873 intron_variant
C/A 9792972 intron_variant
A/T 9792991 intron_variant
C/A 9793036 intron_variant
T/A 9793130 intron_variant
A/C 9793160 intron_variant
G/A 9793173 intron_variant
G/T 9793224 intron_variant
T/A 9793247 intron_variant
T/C 9793261 intron_variant
T/C 9793262 intron_variant
G/T 9793295 intron_variant
C/A 9793297 intron_variant
G/T 9793356 intron_variant
G/T 9793386 intron_variant
T/G 9793390 intron_variant
T/C 9793393 intron_variant
C/T 9793619 intron_variant
T/A,* 9793623 intron_variant
C/A 9793915 splice_acceptor_variant&intron_variant
T/G 9793994 intron_variant
C/T 9794001 intron_variant
T/C 9794018 intron_variant
C/T 9794027 intron_variant
T/C 9794028 intron_variant
A/G 9794058 intron_variant
G/A 9794139 intron_variant
C/A 9794294 missense_variant p.Ser312Arg
C/T 9794325 stop_gained p.Gln323*
T/A 9794456 missense_variant p.Ser366Arg
A/G 9794505 missense_variant p.Lys383Glu
G/A 9794588 synonymous_variant p.Glu410Glu
C/T 9794634 stop_gained&splice_region_variant p.Arg426*
C/T 9794640 splice_region_variant&intron_variant
A/G 9794653 intron_variant
C/A 9794700 intron_variant
G/T 9794943 intron_variant
A/T 9795254 missense_variant p.Thr496Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19602.1
MVPLSTFMDQPNIITMLMFTTMALLLSRAQAMRKCGNCGPNPVPYPLSTGPECGDPWYKIRCTAGILWFDALAGSSYAIRAIDPFTRRIITRPATLAPKMCVSTDFRSEGMHLNETLPFSVASGNTVFLFNCTAHAPSMNCSPSSACHSYIKEHADFSVCGAAGAGPCCEYRSGGARKDFAIRLHGGECAAYESFVDFNGTVATVEKRWPESGVGIEWVAPQEPVCKASIDCKELLNSKCGVGPSGGVQRCFCNAGFGWDPINDTTCTGHGKDSHCKVRKKKKMLVPVVVSIGGIVFVLAITGVIFYKKHNQAKRKAKEAKRNKRKEVSSVKASALSSRIFTGREIRKATNDFSRENLIGTGGFGEVFKGTFDDGTVFAIKRAKLGSTKGIDQMQNEVRILCQVNHRSLVRLLGCCLELEHPLLIYEEEESVNLAMYGKRKMVEEKLMDVVDPLLKEGACDLELETMKSLGYLAVSCLDDQRQKRPSMKEVADEIENLIKVVKGQVSKS*


CDS Sequence:
>Vu_19602.1
ATGGTTCCATTAAGCACTTTCATGGACCAACCTAACATTATTACAATGCTGATGTTCACAACCATGGCATTGTTGCTATCACGGGCCCAGGCCATGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACCGGACCCGAATGTGGCGACCCGTGGTACAAGATCCGGTGCACCGCGGGTATTCTCTGGTTCGATGCACTCGCCGGATCATCTTACGCGATCAGGGCTATTGACCCGTTCACCCGTCGGATCATAACCCGACCCGCCACGCTGGCTCCTAAAATGTGCGTGTCCACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTTAGCGTGGCTTCCGGAAACACCGTTTTTCTCTTCAACTGCACCGCCCACGCGCCTTCGATGAACTGCTCCCCAAGCAGCGCGTGCCACAGCTACATTAAGGAGCACGCAGATTTCAGCGTGTGCGGGGCCGCGGGTGCTGGACCGTGCTGCGAGTACCGAAGCGGCGGGGCCCGCAAAGACTTCGCGATTCGCTTGCACGGCGGAGAGTGCGCGGCGTATGAGAGTTTTGTGGATTTTAACGGCACGGTGGCGACTGTGGAGAAGCGGTGGCCGGAGAGTGGGGTCGGGATCGAGTGGGTGGCACCACAGGAACCGGTTTGTAAGGCGAGTATAGATTGCAAGGAGTTGTTGAACTCGAAATGTGGAGTGGGGCCCAGTGGCGGGGTTCAAAGGTGCTTCTGCAATGCTGGGTTTGGGTGGGACCCCATCAATGACACAACGTGCACAGGACATGGTAAAGACAGCCACTGCAAAGTTCGGAAGAAAAAGAAGATGCTCGTGCCTGTGGTTGTTTCCATAGGAGGAATAGTGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAAGGAGGCTAAAAGGAACAAGAGAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCATCAAGAATCTTCACTGGCAGAGAGATAAGGAAGGCAACGAACGATTTCTCCCGAGAAAATCTGATTGGAACTGGTGGATTCGGTGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTGCCATCAAGCGTGCAAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTGATATACGAGGAAGAAGAGAGTGTGAACTTGGCCATGTATGGGAAGAGGAAAATGGTTGAGGAGAAGTTGATGGATGTGGTTGATCCTTTGCTTAAAGAGGGAGCGTGTGATTTGGAATTGGAAACTATGAAGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGATCAGAGGCAAAAACGGCCTTCCATGAAAGAAGTTGCTGATGAGATTGAAAACCTGATTAAAGTTGTTAAAGGTCAAGTTTCCAAATCATGA


Promoter Sequence:
>Vu_19602::LG5:9789803-9791803(+)
GTTAATACAAAATTTTCAGTATATAAATGGATGCAAATTTTATCTTGTGTATTAATTTTATAACATTAAATTAAATAAAATTTCATTTTTTAAAAGTCTTTCTTTCCATCTTGATTTTCCACTAGCATGGCAACCAAGAGCAAGATGATTCTCGTACATATAGGGGCATCTTTTGGTTCTGCATAACGTATAATGCCATAGATTACTCCATTAGTGATTTTATATGAAATAGAGTTAGTTATACCTCAAAACTAAGGTTAGAATTCTTGTGTACGAAAGAAAAAGAGGGTTTGAAACACTTGATTTTGTTTTCGAGAACGAAATCATGACTTGAGCACATGAAAGGGACTATTTTTAAGATGAAGCCTTCCTCATATTCTGGAGTCGATCATGCACTTTCTTCCGTGATTAACAAAACCATTGTGTTCCATGGAAATTGGGATATATATGGAGAACTGTGATAGCACTTTCGTAACGACAATTTCATGTTTTCAAAATCCTTTTGCTTGTAAATTTGACTGGCTGCTTGTTCGTGCAGCCACCGGAGCAACTCTCCATTAGCATAGCAACAAGTGTGTGTGATGACAATAATTAATGTCGAATGATTTGGGTTATGTGAAAAGGACAGATTGAAGCTTGTGATAAGGAGGCAAAAGGGTCATGAAAAATCATTAAAGAATGATGTGTTGGATCTTGGTAATTAATTCCAAATTCTCAGAGATATGTTACATATAATGTGTTAAAGTTATATATCCCAAGATCTTCTCTTTGATTTTGACGACGAAATAAGGCCAAACTTTTTATTGTAATTATGATCTTTTAAATATGTTTCCATAATATTTTTTAAAATTCTTAATCAGAACTCTGAGGACTAATTACCACGACTCTTAAAATATATTATTGTTACTAACATTCTTTTTTGTCAAAAAAGAAAAAAATTATTGAGGAATTATTGAGACTATTTTAACTTGGTGTTATATAATGGGTTTTTCTACTTTTTTTTTACTTGTCATGTTTGAGAAATTGAAAAACTCGAAGAATCAAATCATAGAAGCTAATAAAAAATGATAATTACTAGACGAAGTTTATAGAAGATACAAGTCACTTGAATTGCCCTATGAATATAAAATAGTGCCATTTAATTAGGGTTTAAAAATTGTAAAATATATTCTTATGTAATTAAGATGTGATGATTCGTAAAAGATAATAGAAGGTCGTGAAGAAAAACAAGAAAGAGTCGTACAAGAGAATTTACTAAATTACATATATTACAATTTTACTTAGTTTTTTCCGTAAACTCATCCAGTAATACTAGCTTTTACTGAAAAGCAAAAAATCTTATTTATATTGAAAATACCATTATAACTTACACAAATAAAATGTCTATAAATTAAAGAAGACATATTTTTATAAAAAAAAAACAATGTTTATTTATCACTTTTCTCTGAGAGTTTGACAACAAATAAAAAATAATTAGTATCTTGTAAATATTTGATTAGTGGTTTCCAAGTCTTCCAACAATAAAATTTTCCTCAAAGATGGAACCCCATAACAAATCCACATATGGTGATATGAATGTGCCTAAAACAATATCGATGGGTTTTGTTACCGTCTTCAACCCATGCATGGTGAGAACGAAACATGCAAATCTTCGTTAGAAAACCGAGATATAGTTAGTTTGGAAAACCAAAATCAGCTACATGCAATGTTTCCTGATCGTATACTAAGACGTTCAAAATCAATTAATCTCATCCCACTTACACCATATTCCACTTTTCTGCACCAGAGGACTTACCATATCTGTATCGTTCCATAAAATTGCACAAACTTTTGAAAATCGCACCAAATTTCACATTCCCCTACACATATATGACTGTCTGCCACTCATTTTCATATCATCTTTCCTATAATTTTAACTCAGAAATAAACTAATTAATTAAAATATCTGACCAATGACGACAGTGCTTATATATCACCAATTGTTTCTTTTTTATACCATA


Gene Sequence:
>Vu_19602(+)
ATGGTTCCATTAAGCACTTTCATGGACCAACCTAACATTATTACAATGCTGATGTTCACAACCATGGCATTGTTGCTATCACGGGCCCAGGCCATGCGAAAGTGCGGGAATTGCGGTCCGAACCCGGTTCCTTACCCATTAAGCACCGGACCCGAATGTGGCGACCCGTGGTACAAGATCCGGTGCACCGCGGGTATTCTCTGGTTCGATGCACTCGCCGGATCATCTTACGCGATCAGGGCTATTGACCCGTTCACCCGTCGGATCATAACCCGACCCGCCACGCTGGCTCCTAAAATGTGCGTGTCCACGGACTTCCGCAGCGAAGGCATGCACCTGAACGAGACCCTTCCTTTTAGCGTGGCTTCCGGAAACACCGTTTTTCTCTTCAACTGCACCGCCCACGCGCCTTCGATGAACTGCTCCCCAAGCAGCGCGTGCCACAGCTACATTAAGGAGCACGCAGATTTCAGCGTGTGCGGGGCCGCGGGTGCTGGACCGTGCTGCGAGTACCGAAGCGGCGGGGCCCGCAAAGACTTCGCGATTCGCTTGCACGGCGGAGAGTGCGCGGCGTATGAGAGTTTTGTGGATTTTAACGGCACGGTGGCGACTGTGGAGAAGCGGTGGCCGGAGAGTGGGGTCGGGATCGAGTGGGTGGCACCACAGGAACCGGTTTGTAAGGCGAGTATAGATTGCAAGGAGTTGTTGAACTCGAAATGTGGAGTGGGGCCCAGTGGCGGGGTTCAAAGGTGCTTCTGCAATGCTGGGTTTGGGTGGGACCCCATCAATGGTTCCTGTCAACCACAAACTCAGACACACAGTATGGCCATAATTTTCTTCTCTTTCTATTTCCCAATAGTTTACGTTTTAATATTTAAAGATATATTAGTTAATAAATTTTAATTATTAATAAATAACGAACTTTCAATTTTTTTTCCAAATATTAAATAGAATTAAGTTTAAACTTTAGATTTTTATCGTTTACTTAAATTGCATATTAAATTTTAAAAAAATTGTGGGAGCAAGCACTACCTTAAAAAGTAATATTAAGAATTTTAATGGCTTCACTATGTTAAAAATTCCCTACATGTGTACATTTTGATGTATTAAAAATATATTCACATTATTTTGTGACCAAAGAAAAAAAGAATTCTTGTTTATTATAATTACTAGTTTTCAGAAATATTTATCAGGTTTATAAAAAAAAACACTACTTCAGTAAACCACAAAAAACATTTATTATATTAAATACATTCTCATCTTTTTTTATTGTAAAAGAAAAACTTAAAATGTAAGTACCACGTAAAATAATGTTTGTTTGATGCTTTAAATATATTTTTTAAAATTTATAACTATTAAATATGTCTATTGGTTTAATTATTTAAATTTAGACAACGATTATTATTACAATTTTCAAATACGTTTGTTATCCATTTTCTTTTTTTAATTTTCAATGTCTTTTAACCTTTTTTTGTTTGCTTAAAGTAAATTAGACTTATCTTTGTGAATTTATCTTAAATGACTTACCTCTAAATAAAATACCAATTAATATTGAAATGAAAATACTCAACTATAAATGAATTGTCGTATTAAAATATAAATAAATATGTTTTTATAAGTTTATAATATATATATATATATATATATATATATATATATATATATATAATTTTTGCATGCGTATAATTTTAATGTAAATATAAATATAAATAAATAGCAAGAGAGATGAATACGAATAATAAGATTATATAAGAAGACATTAAAGAAATATGAGTTTAATTTTCTCATAATTAAATCACTAAATTGTTTTATAATTCTTATAAAAATTTTATTTTAAAAATTTAATATTTAATTTCAAAAATTTATTTAAATTTCAATTAATATGTTATTTTCAAAATAAAATAAAAATTAAGTGTCACTCATTAAAAATAATGAAGATGAGTGTCAACATTTTAAAAAAAAAACTTAGGCAATTTTTTATTAAAAGAAATGAAGAATTATTAATTTTTTTATTTTTTTAATGAAAATGACTTAAATATATTTTTTTTCCTTTCTTCAACAACTTGGCGTGAAAAAAAGAAATCCATTAATTGATTTTCTCTAACATGCAGACACAACGTGCACAGGACATGGTAAAGACAGCCACTGCAAAGTTCGGAAGAAAAAGAAGATGCTCGTGCCTGGTATGTGTTTATCAGCCTCTTTAGTTTCCTTCTGTTATATGCTAACATTTAACAGTTCTGATCACGTGCGATACAATTTTGCAAGATTAAAAATAAACCCTTTATTATATTGTATGAAAAGTGATATAATTAGTGGGAAATTTTCTATTACTTGATGGTGAGATGATACATAAAAATGAAGATAAAGGCACGAAATTTTATGACTTTCTGTTCTGAACTCTTGTTTTGGACAGTGGTTGTTTCCATAGGAGGAATAGTGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAAGGAGGCTAAAAGGAACAAGAGAAAAGAAGTCTCAAGTGTGAAAGCCAGTGCTTTATCATCAAGAATCTTCACTGGCAGAGAGATAAGGAAGGCAACGAACGATTTCTCCCGAGAAAATCTGATTGGAACTGGTGGATTCGGTGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTGCCATCAAGCGTGCAAAGCTTGGAAGCACCAAAGGCATTGATCAGATGCAAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAGACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTGATATACGAGTACGTTTCTAATGGGACCCTTTTTGATTACCTTCATCGCCATTCTTGTGACACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGCCGAAGGGCTTTCATATCTGCATTCTGCAGCTGTGCCACCCATTTACCACCGAGACGTGAAATCAAGCAACATACTTCTTGATGACAAGCTTGATGCCAAGGTTTCTGACTTTGGCTTATCAAGGCTTGTTGAGTTGGCTGAAGAAAACAAGAGCCATATATTCACCAGTGCTCAAGGGACACTAGGGTACCTAGACCCTGAGTACTATCGTAACTTTCAGTTGACTGATAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTGATGGAGTTGCTCACTGCTCAGAAAGCCATTGATTTCAACAGGGAAGAAGAGAGTGTGAACTTGGCCATGTATGGGAAGAGGAAAATGGTTGAGGAGAAGTTGATGGATGTGGTTGATCCTTTGCTTAAAGAGGGAGCGTGTGATTTGGAATTGGAAACTATGAAGTCATTGGGGTATCTCGCAGTTTCATGCTTGGATGATCAGAGGCAAAAACGGCCTTCCATGAAAGAAGTTGCTGATGAGATTGAAAACCTGATTAAAGTTGTTAAAGGTCAAGTTTCCAAATCATGA

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