Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19547 LG5 8826437 8829700 PREDICTED: telomere repeat-binding protein 5-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   root morphogenesis, plant epidermis development, developmental growth, root morphogenesis, cell differentiation
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA binding, bending, telomeric DNA binding
SNP Position Effect Amino acid change
G/T 8826775 missense_variant p.Lys81Asn
G/A 8827553 intron_variant
T/C 8828492 missense_variant p.Leu359Pro
T/C 8828493 synonymous_variant p.Leu359Leu
T/A 8828894 synonymous_variant p.Val446Val
A/G 8828900 synonymous_variant p.Gly448Gly
A/C 8829259 missense_variant p.Asn538Thr
G/C 8829264 missense_variant p.Val540Leu
T/C 8829269 synonymous_variant p.Leu541Leu
G/A 8829331 intron_variant
A/C 8829337 intron_variant
T/A 8829696 stop_gained p.Leu602*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19547.1
MMLQKKVNYGFNGYKGPAIPKASRSIRGRGTIKKKPENNQIQAFEILANVAGNFLQESENSGLDNVASAKDPHTFSSADMKDKLEDERGSFKKDLCEHGNCSEIVSACVPSRQGKHENLRVMDSSSFPGNHLEGQGQNILEREDERGKRRRVNEKNTHIKGCFEGLIEPSCKVSKDCSSENNVAKSSLEGHRHIDSFPNTSSGRKLGRDDDENLVNSTQLNSRDKIYSTPPDMQKLKYASSLMSDENNSRDNSELENLQRMYPFKKRKFFNQTSSSTSDRGSQCQGTFDSSDTTRVNDTNHAIEESSSIVGQQVHSGSKGCNVKLSIKSFKVPELFINIPETATIGSLKRTVMEAVTTILGNELHVGILLQGKKVRDDSKTLIQTGISQDDKRHRLGFMLEPRHTSNSPSSCNDNPCFLTTGSQQKLSKLSTSLMLQQGTYNVSQERSRIKIESCVEGDLNVVSSQPDTYANNNVSKCRTLVAVPAINMEALAVVPFRRKSGNPDFAQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDHAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQLKPL*


CDS Sequence:
>Vu_19547.1
ATGATGTTGCAGAAGAAGGTGAACTATGGTTTTAATGGCTATAAAGGGCCTGCCATTCCCAAAGCTTCAAGGTCAATTAGGGGTAGGGGTACAATCAAGAAGAAACCTGAAAATAACCAAATACAAGCTTTTGAAATATTGGCTAATGTAGCTGGCAACTTTTTACAAGAGAGTGAGAATTCTGGTCTTGACAATGTAGCTTCTGCAAAAGATCCTCACACTTTCTCTAGTGCTGACATGAAGGATAAGCTTGAGGATGAAAGAGGATCATTTAAGAAGGACCTATGTGAGCATGGAAATTGCAGTGAAATTGTCTCTGCCTGTGTCCCTAGCAGGCAAGGGAAACATGAGAACCTTAGAGTCATGGACAGTTCATCTTTTCCTGGCAACCATCTTGAAGGCCAAGGCCAAAATATCCTTGAAAGGGAAGATGAAAGGGGAAAAAGAAGAAGAGTAAATGAGAAAAACACTCACATTAAAGGCTGCTTTGAGGGGTTAATAGAACCAAGTTGCAAAGTGTCTAAAGATTGCAGCTCAGAAAATAATGTGGCAAAGTCGTCATTGGAAGGCCATAGGCATATTGATTCCTTCCCCAACACTTCCAGTGGCAGGAAATTAGGTAGAGATGATGATGAAAACTTAGTTAACAGCACTCAACTAAACTCCAGGGATAAGATATATAGCACACCACCAGATATGCAAAAATTGAAATATGCAAGTTCCCTTATGAGTGATGAGAACAATAGTAGGGACAATTCTGAGCTTGAAAATTTACAAAGGATGTACCCATTTAAGAAGAGGAAGTTCTTCAACCAGACCTCATCATCCACTTCTGATAGGGGGTCTCAATGCCAAGGCACGTTCGATTCTTCTGATACCACAAGGGTCAATGACACAAATCATGCAATTGAAGAATCATCCTCTATAGTTGGTCAACAAGTGCATTCTGGGTCCAAGGGTTGTAACGTGAAGCTGAGCATAAAATCCTTTAAAGTCCCAGAACTTTTCATTAATATACCTGAAACTGCAACTATCGGTTCATTGAAAAGGACAGTAATGGAGGCTGTGACAACTATACTTGGAAATGAATTACATGTAGGAATTCTTCTTCAGGGAAAGAAAGTCCGAGATGATAGCAAAACTTTAATCCAAACAGGAATATCTCAAGATGACAAACGTCATAGATTAGGATTCATGTTGGAGCCAAGACATACTTCAAATTCTCCATCTTCATGCAATGATAACCCTTGTTTTCTAACCACTGGTTCGCAGCAAAAATTATCCAAGCTATCAACATCTTTAATGTTACAACAAGGAACATACAATGTATCCCAAGAACGTTCTAGGATCAAAATCGAAAGTTGTGTCGAGGGTGATCTTAATGTGGTCTCCTCTCAACCAGATACTTATGCAAACAATAACGTGTCAAAATGTCGCACTCTAGTGGCAGTTCCGGCCATTAACATGGAGGCATTGGCTGTGGTTCCATTTCGACGCAAATCTGGGAATCCTGACTTTGCACAACGCCGAATTAGAAGGCCATTTTCGGTTCTAGAAGTAGAAGCATTGGTTCAGGCTGTTGAAAAACTTGGAACTGGAAGGTGGCGTGATGTCAAACAACGTGCTTTTGACCATGCAAAACATCGAACTTACGTTGATTTGAAGGATAAGTGGAAGACATTAGTGCACACTGCTAGAATCTCACCTCAACAGAGAAGGGGAGAACCTGTTCCTCAGGAGCTTTTGGATAGGGTCTTAGCTGCTCATGCCTATTGGTCTCAACAGCAATGTAAGCATCAACTCAAACCATTATGA


Promoter Sequence:
>Vu_19547::LG5:8824437-8826437(+)
ATATGTTTTTGTTTCGTTATTACAATTTGGAACGTTCACTTATATAACTTAAACAAATCAACATTTAAAAATGTATGGTCTAAGCATTTTGAATTTTATGAAAACTTAAAATAAATCCATATATTTGTCAGCTTTAAGATAAGAATAAGTGTAAAATATGATATTTTTTAATTGAATAAAAACGCAGTGTTTTAACCTGGTTAATGCATTACTCGTTATATTTTCTGACATTGCCTAAGTTTTTATGATAAACCAACATTCGTTAACTGTCTTTGGCTCAAAAAAACCAAAGCTCATATTGTTTTCATTGCCAATAATATAAAAAAAGGAATTAGTCTCGTTTTTATATTAGTTTTTAGACAATGATTTTGAAAGTTTGGGGAGTTGTTGGCAAATAGGGACAAGGAGTGGCTTATGTTTTGAAACTCATTCAATCATTTGTTTTTTAAGAAAGGAACCCAAATGAGTGGAGAATGTTCCACGTGGTAAGCAAAGAAGTGACATGGAGAGAGGAGTGAGTGGATCACCCGAAACGAAGGAACCGTTCCATCCAAGTGGTTTTGCTGACACAACCTTCTATAGCCAATCTAACATCATCTTACATCATAGTCCCTTCCTAGGATATGAGTGGTCAAACATTTCATATAGTTTGTTGGGGTTGTGAGGGGTTTAAGAACAAACACCAGTTTGGGTGGTTTTCAGGAGGTTTTGGTTTATCAGACAATATCCCTACACTATTATTTATTGCCTTTCATCAAAACTTCTTTACACACAAAAATAAGTGTTCATCTTTTGGTGCAAACACAATGCAACACAACAAAAAGGTTTTATGATTCATCGGTATTTTACTGTTTTTCATCACTTCTTCAATAGACTAACTTTCATCATTTGCTTTCTCATTTTTCCTCCATTACTATTGGAATTTGCATTGCCCATCTTCCTTCCACAATTCTTTTTTCTGGGTCCTTTCTTGTTTGATTCATTTTATTCATGTACATTCCTATAGCTTTTCTGCCTTTTCTTTCTATATTTTTCTTTTATTAGTATAATTCATCTCTCTCATACATGCAAAGTGGCAATAGATTTGTAAAACCTGTCGCATGTTGTCTCCTTAAAAGGGTCACAGGGGGCTTTAAGATCCATTTTTTCAATACATTAAATTGATGATATGTGTTATTTCTTTTCGGAATATGTTCAGTGTTTCTTTCGCTAGTTGTTTCTGTTATTCTTAACTTTGTTCAATAGGAATATGTTTTGGATGATTATAATCCTCGTGCTGCAATTGGCTTTTGTTTTTCTGTGTTTCAAAATTAATTGAAAACATCTTCTTTCTTTTACTTTTTGTATTTCTTTCTCTTTTTTGAAGGGTATTTTATCTCCTTGAATTTCAAACTAGAAAAAAGTTATTTTAACATGGTTGAAGGGGTGTTATTCTAATGTCCCGTTAAGTGCAGGTGTTTCAATATCTCTTTTTTCTTGTTGATATTTCATTATGATAGAAGCTTGTTTTCATTCGGAGTTTCAAGAATCAAGTAACTTCTAACATCATTATCATATAACCCAATCCCAGAAAAAGATATTTTTATGCATGTCATCTTGTCCTATTCTTTTTCCTTTAATTTTGGCATTGATATTTAAAGCTTCTTCACTTTTATTATTGCCTATTTTTATCTTAGTATCTTCTATCCTGGTTCCTTTGTAAATTGTTTCCGTTTTTACCAATTGTAGAAAATTTCTTGCTTGTTAGCTTTTTTAATGAAACATAGCTACCAATAAGAAAAGTGTTACTTTGCTTGCCTTTGCATGGGACTAGTTTCTAACTAAATGAGTTAAGACCCTTTAACATTTTGAACATGCAACTAGGTGTAATGAAAGACTCATCAAACTACTGACTGAAATTTGATAATTCTGACAGGTTCATTTCTTGGTGTTTGCAAAACCACAGGAAGTCAATTACATTTTATCTTATGACTTTTCCTTATAGGAATGATTATCTAAAA


Gene Sequence:
>Vu_19547(+)
ATGATGTTGCAGAAGAAGGTGAACTATGGTTTTAATGGCTATAAAGGGCCTGCCATTCCCAAAGCTTCAAGGTCAATTAGGGTAAGCAAATTAAATTTTCTCCCTTCTTTTCTCATGCTTGTTGAGTTGTATTATTAGTTCTGTTTCAAATCTTGATAATTCTAGTACATGGTTTAGGGTAGGGGTACAATCAAGAAGAAACCTGAAAATAACCAAATACAAGCTTTTGAAATATTGGCTAATGTAGCTGGCAACTTTTTACAAGAGAGTGAGAATTCTGGTCTTGACAATGTAGCTTCTGCAAAAGATCCTCACACTTTCTCTAGTGCTGACATGAAGGATAAGCTTGAGGATGAAAGAGGATCATTTAAGAAGGACCTATGTGAGCATGGAAATTGCAGTGAAATTGTCTCTGCCTGTGTCCCTAGCAGGCAAGGGAAACATGAGAACCTTAGGTACATTTGAATAGTTGTTTCTCTTGATAATTAAAAGTTCTGACTCACTAACAAATGATCAACCAAATGTTTATTACATAGTGCAGTAAAGGTTTTGTTGTTTATGGTAAATTTAATCACTTTGCAAACTTGTCATGACTCATCAGTGTTATGTTCTATGCAAACTCTTGCCAGAGTCATGGACAGTTCATCTTTTCCTGGCAACCATCTTGAAGGCCAAGGCCAAAATATCCTTGAAAGGGAAGATGAAAGGGGAAAAAGAAGAAGAGTAAATGAGAAAAACACTCACATTAAAGGCTGCTTTGAGGGGTTAATAGAACCAAGTTGCAAAGTGTCTAAAGATTGCAGCTCAGAAAATAATGTGGCAAAGTCGTCATTGGAAGGCCATAGGCATATTGATTCCTTCCCCAACACTTCCAGTGGCAGGAAATTAGGTAGAGATGATGATGAAAACTTAGTTAACAGCACTCAACTAAACTCCAGGGATAAGATATATAGCACACCACCAGATATGCAAAAATTGAAATATGCAAGTTCCCTTATGAGTGGTATGTAGCTTTGCTTGCAGTTGGTTTTGAATTCATACCAAATGTGAAACAAGAAATCTATATTGATGTATATATTCATGAATGTTAGTTAATTTCCAAAGTTTGCACATTTTGTATATATATTAATAGTCAGTAAATTGTGTTGACATAGATGAGAACAATAGTAGGGACAATTCTGAGCTTGAAAATTTACAAAGGATGTACCCATTTAAGAAGAGGAAGTTCTTCAACCAGACCTCATCATCCACTTCTGATAGGGGGTCTCAATGCCAAGGCACGTTCGATTCTTCTGATACCACAAGGGTCAATGACACAAATCATGGTACAGGTGCTACAATGCTTGGTTTCCTACCTCTTACTTTTCGTTGTAATGTAGGTTTCCTTTTAGGCTTTCACTCAACTTTGGCTAAATGGTCAAATTAATAACATGCAGCAATTGAAGAATCATCCTCTATAGTTGGTCAACAAGTGCATTCTGGGTCCAAGGGTTGTAACGGTAAGAAAATCAATGTTACCAATTACCAACATCTGATCCTAATTTAGTCTAACATAACATCTTGTTATATAAGGTCTTAACGAATTTCATTTTTACCTTACAGTGAAGCTGAGCATAAAATCCTTTAAAGTCCCAGAACTTTTCATTAATATACCTGAAACTGCAACTATCGGTTCATTGAAAGTAAGCAGTTTAGTTTTTTCTTTCTAAGTAACACACATTATTGACATGGTTTATACTCCATTTTATGTGTATTTCTATCATTTGTGACTAAAGCAATGAACTATAAAACAAACTGAGAAACATGAACAAATTTACTGCATAATCTGAGCCTTAAACCTAACACCAAACCACCTTCATGGTATGTTCTCATGCCTCCATACCAAATGAAAATAGATTTCAAAAATATAAAGCAAGTATAATAACTATAGTGACTCATTGTACCTTTTCTTATGCTCACTTTGTCTACTTTTATGATTATTATTAATTCTTCTTCTTATTGTTGTTATTGCTATTATTTTGTAGAGGACAGTAATGGAGGCTGTGACAACTATACTTGGAAATGAATTACATGTAGGAATTCTTCTTCAGGGAAAGAAAGTCCGAGATGATAGCAAAACTTTAATCCAAACAGGAATATCTCAAGATGACAAACGTCATAGATTAGGATTCATGTTGGAGCCAAGACATACTTCAAATTCTCCATCTTCATGCAATGATAACCCTTGTTTTCTAACCACTGGTTCGCAGCAAAAATTATCCAAGTAACCTTTCAACAAGCCATTTCTGTTTACCATATTCAGTTATTTTTTTATGTGATAGTCATCTATCTTTCTTAGTCCTTTCATCCATGGAATTACTTTTGAATAAACAGTTACAAATTTGACGATATTCAATAAACAGGCTATCAACATCTTTAATGTTACAACAAGGAACATACAATGTATCCCAAGAACGTTCTAGGATCAAAATCGAAAGTTGTGTCGAGGGTGATCTTAATGTGGTCTCCTCTCAACCAGATACTTATGCAAACAATAACGTGTCAAAATGTCGCACTCTAGTGGCAGTTCCGGCCATTAACATGGAGGCATTGGCTGTGGTTCCATTTCGACGCAAATCTGGGAATCCTGACTTTGCACAACGCCGAATTAGAAGGCCATTTTCGGTTCTAGAAGTAGAAGCATTGGTTCAGGCTGTTGAAAAACTTGGAACTGGAAGGTATGTTGATAAAGTTTTAGTCTTTTATGTTTTTAGTTAATGAGTAGCTGTACCCTCTTCGTGATATTAAATGTTACTTGTGCGTTGAAGGTGGCGTGATGTCAAACAACGTGCTTTTGACCATGCAAAACATCGAACTTACGTTGATTTGAAGGTCAGCAATTCATGTGACGCTTTGTTTTCATTGTTTTCTAGCAAAATAGTTAAGTGACAGCATTTGACATTGGATATTTGGTGTTTTCATTGTGATCTATCTTCTCTAGTAGTTCTCAAGTTTGCAATTATACTTCTCCTTGTAAGAAAAATCCTTAAAGTGGCAGGAACATTCATCCACACACATAAAAATATGCAATATTTGCATTGTTGCAACACTTTGGTGACTATGAGAATGTTGTAGGATAAGTGGAAGACATTAGTGCACACTGCTAGAATCTCACCTCAACAGAGAAGGGGAGAACCTGTTCCTCAGGAGCTTTTGGATAGGGTCTTAGCTGCTCATGCCTATTGGTCTCAACAGCAATGTAAGCATCAACTCAAACCATTATGA