Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_19448	LG5	6668263	6670539	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	6668266	missense_variant	p.Gln758His
T/A	6668683	synonymous_variant	p.Ala619Ala
G/C	6668684	missense_variant	p.Ala619Gly
A/T	6668687	missense_variant	p.Val618Glu
G/A	6668707	synonymous_variant	p.Asp611Asp
C/T	6668752	synonymous_variant	p.Glu596Glu
C/T	6669070	synonymous_variant	p.Arg490Arg
T/A	6669072	missense_variant	p.Arg490Trp
G/C	6669244	synonymous_variant	p.Thr432Thr
T/A	6669311	missense_variant	p.Gln410Leu
G/A	6669343	synonymous_variant	p.Ser399Ser
T/A	6669488	missense_variant	p.Gln351Leu
C/T	6669494	missense_variant	p.Gly349Glu
T/A	6669497	missense_variant	p.Lys348Met
A/G	6669565	synonymous_variant	p.Asp325Asp
C/G	6669654	missense_variant	p.Glu296Gln
T/C	6669681	missense_variant	p.Arg287Gly
G/C	6669956	missense_variant	p.Thr195Ser
T/A	6670195	synonymous_variant	p.Val115Val
T/A	6670344	stop_gained	p.Lys66*
T/C	6670353	missense_variant	p.Lys63Glu
A/T	6670393	synonymous_variant	p.Ser49Ser
G/A	6670529	missense_variant	p.Ser4Phe

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_19448.1

MGSSLSVENPHHILISPNAIFSAGFLAIGDNAYSFAIWFTEPHFHSPTSVTWMANRDQPVNGKSSKLSLTNDGNMVLIDAALNIAWSSNTASSAPVELHLKDDGNLVLRHLQGTVLWQSFDFPTDTLVPGQPLTRYTQLVSSRSESNHSSGFYKFFFDDDNVLGLHYDGPDVSSSYWPQPWLISWDAGRTNFNSTRIGVLNSLGLFSSTDNFTFVTSDYGTVLQRRLKVDCDGNVRVYSRNNVLQKWYVSWQAISSGCISHGICGTNSFCTYVPKSGRKCLCLPGHRLKNHSDWSEGCEPLFQLTCHRNESMFLEIRNVEFYGYDNHYVEVSNYSACENLCLQDCSCKGFQHSYSDDKPFYRCYTKTQLLNGRRSPVFQGATYLRFPKSNSFSHKEHASEPLYDHVCSVQLQRDYIKSQGNHFVKIFLWFSTALGAFEVICIVLIWCLVRTRQKSNVDREGYHLAETGFRKYSYSELKKATKGFSEEIGRGAGGVVYKGILSDERHAAIKRLNEAEQGEGEFLAEVSIIGRLNHMNLIQMWGYCAEGKHRLLVYEYMENGSLAQNLSSNTLDWSKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDANYQPKVADFGLSKLLKRGNKLSNSSISMIRGTRGYIAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSTTRSIHDDEERYDGRVVEWVREKKGNSSNSYWVEEIIAPDIGADYDHRKMEILCTVALNCVMEDRDSRPTMSQVVEMLQ*

CDS Sequence:
>Vu_19448.1

ATGGGCTCTTCCCTCTCTGTGGAAAATCCACACCATATTCTCATCTCACCAAACGCCATCTTTTCTGCTGGCTTTTTAGCCATTGGTGACAACGCATATTCATTTGCAATATGGTTCACGGAGCCTCATTTTCACAGCCCAACTTCTGTCACATGGATGGCAAACCGTGACCAACCTGTCAATGGAAAAAGCTCCAAACTTTCCCTCACAAACGATGGCAACATGGTCTTGATTGATGCTGCTCTTAACATTGCTTGGTCTTCAAACACTGCTTCATCAGCCCCAGTGGAGTTGCATCTCAAAGATGATGGCAATCTAGTGTTACGCCATCTTCAAGGAACCGTACTGTGGCAAAGTTTCGATTTTCCAACCGACACTCTCGTTCCTGGTCAGCCTCTAACAAGATATACGCAACTTGTGTCTTCAAGAAGCGAGAGTAACCATTCCTCAGGTTTCTATAAGTTTTTCTTCGATGATGACAACGTTCTTGGTCTTCATTACGATGGTCCTGATGTTTCAAGCTCCTACTGGCCACAACCTTGGTTGATAAGTTGGGATGCTGGAAGGACTAATTTCAACAGTACTAGAATTGGCGTGTTGAATTCTCTGGGACTTTTCAGTTCAACAGATAATTTCACTTTCGTGACATCTGATTACGGAACAGTGCTGCAGAGAAGGTTGAAAGTGGATTGTGATGGCAATGTTCGAGTGTACAGTCGAAATAATGTTTTGCAGAAGTGGTATGTTTCATGGCAAGCAATTTCTAGTGGTTGCATATCTCATGGGATTTGTGGAACCAACAGCTTCTGCACTTACGTTCCTAAGAGTGGAAGAAAATGTTTGTGTCTTCCGGGGCATAGATTGAAGAACCACAGTGATTGGTCTGAAGGGTGTGAACCCTTGTTTCAGCTTACTTGCCATAGGAATGAGTCTATGTTCTTGGAAATTCGAAATGTTGAGTTTTATGGCTATGATAATCATTATGTAGAAGTCAGTAACTATAGTGCCTGTGAGAATTTATGCTTGCAAGACTGCAGTTGTAAGGGGTTTCAGCACTCCTATAGTGATGATAAACCATTTTATAGGTGCTATACGAAAACGCAATTGCTCAATGGAAGACGTTCACCGGTATTCCAAGGAGCAACATACCTTAGATTTCCCAAAAGTAATAGCTTCTCTCACAAAGAACATGCCAGCGAACCTTTATATGATCATGTTTGTTCAGTTCAACTTCAAAGAGATTATATCAAATCACAAGGAAACCATTTTGTGAAGATTTTCCTGTGGTTTTCCACCGCCCTTGGAGCTTTTGAAGTGATTTGCATTGTTTTGATTTGGTGTCTAGTTAGGACCAGACAAAAGTCTAACGTTGATCGAGAGGGCTACCATCTTGCAGAAACAGGATTCAGAAAATATAGTTATTCAGAGTTGAAAAAGGCGACAAAGGGGTTCAGTGAAGAGATCGGAAGGGGTGCGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATGAAAGACATGCAGCAATTAAGAGACTGAATGAAGCTGAACAAGGAGAAGGAGAATTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTGATTCAAATGTGGGGATATTGTGCTGAGGGAAAGCATAGATTGTTGGTGTATGAATATATGGAGAATGGTTCTTTGGCACAAAATCTGTCATCCAACACTCTTGATTGGAGTAAGAGATATAACATTGCCCTTGGAACTGCAAGAGTTCTGGCATATCTTCATGAAGAATGCTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAGAACATACTTCTTGACGCTAATTATCAACCCAAGGTAGCAGATTTTGGCCTGTCGAAGCTCCTGAAGAGAGGTAATAAGCTCAGCAATTCAAGCATCTCTATGATCAGAGGGACGAGAGGATATATAGCACCTGAATGGGTTTTTAACTTGCCAATCACATCGAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTAACTGGGAAAAGCACAACAAGAAGTATCCATGATGATGAAGAAAGATATGATGGGAGGGTGGTGGAATGGGTGAGAGAGAAAAAGGGAAACAGTAGTAACTCATATTGGGTGGAGGAGATAATTGCACCTGATATTGGAGCTGATTATGATCACAGGAAGATGGAAATTCTGTGTACAGTGGCTTTGAACTGTGTCATGGAAGACAGAGATTCTAGGCCCACCATGAGCCAAGTCGTTGAGATGCTTCAGTGA

Promoter Sequence:
>Vu_19448::LG5:6670539-6672539(-)

GATTTTTCTGTTGTAGCCCGATTTAGGGATTTTTCTGGGTAGTGCGATTCTGGGTAGTGCGATTCTGGGTTCTCTGTTTGCAGTGCGAAGGAGCAAGCTTCCATGGTTGTGCGAGATTGATGACGGAGGTGCGGCGTCCATGGAGTTTGGATGAGAACGAAGGCAGCGACACTTTGGCGAAGAGACTTGCAGTGGAGGTTCAACGACGATTTGGGATTGTTCTGTGGAAGAAACGCGATATCCGATGACGACATTAATCGCAGCGTGAGGCTTCGTGATGGTGCGAACTGTAGCGACGCGAGGAAGATGGTGAGGACGAAGGAGAAGGTGGCGGTGTGACAGTGGTCTTTCGCGGCGGCACATGGGATTGATGGTTGTGGCGCGGCATAGCTGACGCTTGAGGGAGAAGATGCTTTGATAGTTGGTGGCCTTGCGGCGGCGTGTGCCTAGTGGCTTCGAATGGAAACACCGCCGTTGATGGCGTGATGAAGACGATCAAGATGCTTGCGCGTGGAAGATGGGTGTTGGCCTGATGTGATGGTGCGGCAACAAGGTGGTTGCTGGTGGTGCGGCGGTGGCTAACGGCGCCCTAGGGTTTGGTTTGGGAATTAGGGTTTCAGATTGTTAGAGAAGATGATGATGTGTCAAAGTGGTGATGTGGTAGCATGTTATTGGCTGAAATGTTTTTTCTCCATAAAATGTTTTTTCTTTTTTAATTTTATGTTCACGGGATGTGTTGTTGGACTGTTGAATTTCACAATGTAAATGAGAATGAGGCTTTCAACACTTAATTTTAGGTTTAATTTCCAACTTTGCCCTTACTTAAACATCAGTTTCCACTCTGTATGCTTTATTTTTTAATTCAAAAATTAATAAAATATAATTCAATCACGTTTTTAATGCCACGTAATAAAAAACTACACTGCCAGCATACCCTTCTTAATAGCGTCATTTCAGTTTGACGAAAATGTCCTATTTGATTCAATTTTACAAAAATAAGGACTCAATTGAGATGCTGAAAAAGAAAGAAACCTATTTGAAATTCTGGGTGAGAATATGAACCTATTAATATATTACTTGAAATGAGAAAATTATTAATGTAGTGTATGAATGTATGGAAAGTTCTAACATTAATATTTTTGTATAATATAACGATAAATTCTCTCAACTATAAATTTAAAATGAAACTGATTAGGAAAATGTTTTAATATTAAACTGATTCTTAAATATTATATCTCTTAGCAAAATAATTCCTCGAAATATAAACATGATATTAGAAGTTTCTATATAAAAAATAAATAAATTTTTTTATTATTTTTAGAAATTGAGTCTCACCGATTTGAATAATTCAACTATTTATTCTTAAATATGATTTATAGTTATTTTTGTTTTCTCCATTCCAAGAGTTTTCATTTCACTTTATCATGTCAATATGGTTAATTACATTAAAAAGACATAATTGACCACTTTAATTATATTTTTTCCTTTTTTTATCCATGCGTTCCTTTTAAGATATCTAAATCTAATTTCATTATTATTATTTAAAATTATGATTATATAATTTATTTACAAAAATAAAAATACAAAAGAAAATACAATATTATTAAATATTTAATATTCTAATATTACATATTAAAAAAATTATAATTATTAAAATGAAAATATCAAATAAAATTAAATAAAGACAAACAATAATTAAATACTTAATTACAAATTAACTAATAAATTAATATTATTTTAATAACTTAAACTAGTTATCTTTTCCTTTGTGAGATGGATGGAGTAATAGACTATTAGGTTCTTTTGGCATCATGGTAACCAACCGCAAAAATATATTACAATATCAATACACAGTTCATGAGTACAAACACAAATTACTGGATTTCAACAAGAACACACGAGATCTTCCATTGAATATGAGTATGCCTATGTCAATCACACTCTTTCTTCTACCATTATTGTATTTCCAACTTTCATCATCTTCTTCATCATCCCTGACA

Gene Sequence:

>Vu_19448(-)