People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19411 LG5 5946808 5949944 PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11300
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 5946831 synonymous_variant p.Leu8Leu
T/A 5946832 missense_variant p.Cys9Ser
A/T 5947599 missense_variant p.Glu264Asp
C/T 5947791 synonymous_variant p.Cys328Cys
G/T 5947873 missense_variant p.Gly356Trp
A/G 5948036 missense_variant p.Asp410Gly
T/A 5948122 downstream_gene_variant
T/A 5948124 downstream_gene_variant
G/T 5948134 downstream_gene_variant
G/T 5948158 missense_variant p.Arg421Met
G/A 5948389 downstream_gene_variant
A/G 5948391 downstream_gene_variant
A/T 5949239 missense_variant p.Lys505Asn
T/C 5949240 missense_variant p.Ser506Pro
A/T 5949246 missense_variant p.Asn508Tyr
C/A 5949823 missense_variant p.Pro645His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19411.1
MFFVWFILCCYALDIGTATDTINSSQFIKDNETITSAGGNFTLGFFTPQNSTNRYVGIWWQTKSTVIWVANRNQPLNDSSGVVTISEDGNLVVLNGQNQVIWSTNVSTTSSNTSAQLSDSGKLVLAETTRGTLWDSFQQPSNTLMPGMKTLTNAQTGRKVELTAWKSPSNPSVGSFSASVLRRINILEAFIWNETRPYWRSGPWNGAIFTGIPMSSFLYSFKAGDDEEGNTYFYYTIPSPLKIFIYVLNSRGQYEELSWNDKKEEMEISWTSHESDCDVYGICGPFSICNATNSPICSCLKGFEPMNKKEWNRQNWSSGCVRSTPLRCERVNQNVSAKEDGFSQLQMVKVPDFPEGSPVDTECRSQCLENCSCVAYSYDIGIGCMSWTGNLVDIQQFSEGGLELYVRVADSDLESDLEHDKGTHTAIIVGVTVTVVTVIIVTCAYVMWRTSNHPDPSKSKLLDWRKRCGIIEGIARGLLYLHRDSRLRIIHRDLKTSNILLDEELNPKISDFGMARIFGGSEDQANTNRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLALEILSGRRNSSFYDDEHVLSLLGFAWIQWKEDNISSLIDPEVYDPSHHKDILRCIHIALLCVQELAIDRPSMAAVISMLNSEVAFLPPPSQPAFILRQNLLNSESSKGSHRFSSTNTASITTISGR*


CDS Sequence:
>Vu_19411.1
ATGTTCTTTGTTTGGTTCATACTGTGTTGTTATGCTTTGGATATTGGCACTGCCACAGACACTATCAACTCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCGCTGGTGGCAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACCAATCGTTATGTGGGAATTTGGTGGCAAACCAAATCCACTGTCATATGGGTGGCTAACAGGAACCAACCACTGAATGATTCTTCTGGAGTTGTTACCATATCTGAAGATGGCAATCTTGTGGTGTTGAATGGTCAGAATCAAGTGATTTGGTCAACTAATGTGTCCACAACATCATCCAATACAAGTGCCCAGCTTTCAGATTCTGGTAAGCTAGTTCTGGCTGAAACCACAAGGGGAACATTGTGGGACAGTTTTCAGCAACCTTCAAATACGTTAATGCCCGGAATGAAAACTTTAACCAATGCACAAACAGGTAGGAAAGTAGAACTTACAGCATGGAAAAGCCCTTCTAATCCCTCCGTTGGGAGCTTCTCTGCTAGTGTTCTTCGACGCATAAATATACTTGAAGCGTTCATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGAATGGTGCGATCTTTACAGGGATACCCATGTCATCGTTTCTTTATTCTTTCAAAGCTGGGGATGATGAGGAAGGAAATACATATTTCTATTACACAATACCAAGTCCGCTAAAGATTTTTATCTATGTGTTAAATTCGCGAGGCCAATATGAAGAACTATCGTGGAATGATAAGAAGGAAGAAATGGAAATTTCGTGGACTAGTCATGAATCGGATTGTGATGTTTATGGAATATGTGGGCCATTCTCTATTTGTAATGCAACAAACTCACCAATTTGCAGTTGTTTGAAAGGGTTTGAGCCGATGAACAAAAAAGAATGGAATAGACAAAACTGGTCAAGTGGATGTGTTAGAAGCACACCTTTGCGTTGCGAAAGGGTCAATCAAAACGTAAGTGCAAAGGAAGATGGCTTTTCGCAACTGCAAATGGTTAAAGTTCCTGATTTTCCAGAAGGGTCTCCTGTTGACACTGAATGCAGAAGCCAATGCTTGGAGAATTGCTCTTGTGTTGCATATTCTTATGATATTGGAATTGGTTGCATGTCTTGGACTGGGAATCTCGTAGACATACAACAATTCTCAGAGGGAGGACTTGAGTTATATGTTCGTGTAGCCGATTCTGATCTTGAATCTGATCTTGAACATGATAAAGGGACACACACAGCAATCATCGTTGGAGTTACAGTGACAGTAGTAACAGTCATCATAGTTACTTGTGCGTATGTCATGTGGAGGACTTCCAATCACCCAGATCCATCAAAAAGTAAACTCCTAGATTGGAGGAAGCGCTGTGGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGGGACTCCAGACTAAGAATCATACATAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGAGTGAAGATCAGGCCAATACTAACAGAGTTGTTGGAACATATGGCTATATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGCACTAGAGATTCTAAGTGGAAGAAGAAATTCAAGCTTTTATGATGATGAACATGTTCTTAGCCTCTTGGGATTTGCTTGGATACAATGGAAGGAAGACAACATATCTTCTTTAATAGATCCAGAAGTATATGATCCTAGTCACCATAAAGATATTTTAAGGTGCATTCACATAGCTCTTCTGTGTGTACAAGAACTTGCTATAGACCGACCCTCTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGGTTGCGTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCTTGAGGCAAAATCTGCTGAATTCGGAGTCATCTAAAGGAAGTCATAGATTTTCCTCCACCAACACTGCTAGCATTACAACTATCTCTGGAAGATAG


Promoter Sequence:
>Vu_19411::LG5:5944808-5946808(+)
TTGAGAATATGGTGTGTGAGATTGAGGAGTCCAAAGACCTATCAACACTCACAGATGAAGATTTTATTGAGTCCCTTGAGGTGCACATGTAGTAGAAGAAGAAGATAAGGGTTGAGTCGCTTGAACATGTGCTCCAAACAAACGAAACGATCAAGGAAGAGAATGCATTTTACCAGGTCCATGGAAGGGAGGTCAGTAAGCAACTTAAATGTTGAGTGGTTTAAGTATAACAAGTATGGTCATTATGCAAATGAGCGTTGCTTGAATAAGTGCATTAGTTGTGATAAGGTCAAGCATTTTGCTAAAACTTGTCAATATGATGGAAAAGAAGAGACGACCAATCTCATATAAGAAGTTGAAGAAAATGCAATGTTGTTGATGGTGGAACGTAGCTCAATTTTTTTTAATATAATGGTTCAAATAAGTATTTCACCTTAAACATAAAAATGAAAATAAAATATAGAATAAAGACGAAAAATAAGCTTTCTAATCTATCATTATAAGAAAATAAATATTTAGCATTGATAAAATATTGATGCATATTAACTAATAGTATCATATTTGTGTCGCATTGTGTATGAGATTCTAAAACCAAAAACGATAATTTATCATCATCGACTTTGAAAATCGATTCAAAGTATAATCAACTTTGAAGGTTAACTCAAAGTATTATTGGCTAAGCTGACTCCAACTAGTGTTTTTTAATTAATTTTTCAATTGGAGAGGTTTAACGTCGACTTAGCTAATGTTAATTGTTTTTATTTTAAATTTATTTCAATCAATGTTAAATAAACTTTATTTTTCACAAATTTGCATCTATTTGAAAGACGTTAGTAATAATAATTTAAATATTTTATTGTGGATGAAACAAAATAAAAGAAAAAAAAATAGAAAAAAAATTTGTAGTGAATGAAAGATATGAGTGTAGATGAAAGATATGAATTTGATTGAGATGAGTTTGAATAAATTAAATAAGAATAAAAGTGTGAATAAAAAATATGAGTGTGAATGAAGATACTGAGTGTGAGTGAAAGAGATTTGTCTAGGACTTTTTTTTTTAATGTGAATGAAAGAAGTAAGTGTGAGATTTATATGAAAAAATTTGAAAAAATAATAATAAAGAATTCGTCCTATTTAAATTTAGATCTTTAAATTAAAAATAATTTATGATTTTTATTTATTGTCATTAAAATGTACTAATCCAAGACATTTAAATCAACGTTAAGCCTAGACGAATAGATTTTATTTATGAAACCTTATATATTTTTAATATTTATATTTAGTTAGAATCAGTTAAATTGACTGTAATACATCCTTAAGTTTTTCTACATTAATATTTAAAAGTTAATTTAATGTTTTTTTATTGAAGTAATATAGAGTTCCTTTTTTCACGGATAGATTTGTTCATATTTACAAAAATTAGAATTTATTAAATTTATTAGGAAAAAAAATCTAAATAAAATTGTTGTCGGCAATAATTATAATGATCGTGGTTCAAATTTATGACATATTTAGTTTTACTTAAATTTAACTATTCTTTTATTTGCCAAGAGATTATAGTTGAAACTTATATGATCTTGGCAACTACAAAAGTAAAATATTGGATAGCAACTCCCTTGAAAACTAATTTAAATGATAGTTTTAAAAAGAATCAGACAACTAACATTAGTTTAGTAAAATTACTTCAGCAACATACCAAGTCAAAGTTGACTACAGAAATATTCTTCACAAATTTGACGAGTTAAGTTAATTGTGCGGAACAAGAAACACTAGAGGTAGTGAAAAGAAAGATGTGATAGTGAAGCCTGTTTATTCTATTCAATTTTTCTTATTTATATAAGAAAACTGAATTCAACAATTATTTAGTCAAGTGGGAGATATCAGTTTTAAATGGTAACAGTGGCATGGAACAAACCGTTGACTTTAACATGGCACTGTCAAATCTTATAGTGGCCATTTGGTTCATGGTAATAAAGAGTTTCAGAAGCCGTATGCAAGCA


Gene Sequence:
>Vu_19411(+)
ATGTTCTTTGTTTGGTTCATACTGTGTTGTTATGCTTTGGATATTGGCACTGCCACAGACACTATCAACTCATCTCAGTTCATCAAGGACAATGAAACTATAACCTCCGCTGGTGGCAACTTCACCTTGGGGTTCTTCACCCCTCAAAATTCTACCAATCGTTATGTGGGAATTTGGTGGCAAACCAAATCCACTGTCATATGGGTGGCTAACAGGAACCAACCACTGAATGATTCTTCTGGAGTTGTTACCATATCTGAAGATGGCAATCTTGTGGTGTTGAATGGTCAGAATCAAGTGATTTGGTCAACTAATGTGTCCACAACATCATCCAATACAAGTGCCCAGCTTTCAGATTCTGGTAAGCTAGTTCTGGCTGAAACCACAAGGGGAACATTGTGGGACAGTTTTCAGCAACCTTCAAATACGTTAATGCCCGGAATGAAAACTTTAACCAATGCACAAACAGGTAGGAAAGTAGAACTTACAGCATGGAAAAGCCCTTCTAATCCCTCCGTTGGGAGCTTCTCTGCTAGTGTTCTTCGACGCATAAATATACTTGAAGCGTTCATTTGGAATGAAACTCGACCATACTGGCGCAGTGGTCCATGGAATGGTGCGATCTTTACAGGGATACCCATGTCATCGTTTCTTTATTCTTTCAAAGCTGGGGATGATGAGGAAGGAAATACATATTTCTATTACACAATACCAAGTCCGCTAAAGATTTTTATCTATGTGTTAAATTCGCGAGGCCAATATGAAGAACTATCGTGGAATGATAAGAAGGAAGAAATGGAAATTTCGTGGACTAGTCATGAATCGGATTGTGATGTTTATGGAATATGTGGGCCATTCTCTATTTGTAATGCAACAAACTCACCAATTTGCAGTTGTTTGAAAGGGTTTGAGCCGATGAACAAAAAAGAATGGAATAGACAAAACTGGTCAAGTGGATGTGTTAGAAGCACACCTTTGCGTTGCGAAAGGGTCAATCAAAACGTAAGTGCAAAGGAAGATGGCTTTTCGCAACTGCAAATGGTTAAAGTTCCTGATTTTCCAGAAGGGTCTCCTGTTGACACTGAATGCAGAAGCCAATGCTTGGAGAATTGCTCTTGTGTTGCATATTCTTATGATATTGGAATTGGTTGCATGTCTTGGACTGGGAATCTCGTAGACATACAACAATTCTCAGAGGGAGGACTTGAGTTATATGTTCGTGTAGCCGATTCTGATCTTGAATCTGATCTTGAACATGGTATGCTAAGTATGCTCAAACATTAAAAACCCTATTTCTTTGAACTGGATTCCTCATATTTTAAATTTGATTTTTATTTCATGACAGATAAAGGGACACACACAGCAATCATCGTTGGAGTTACAGTGACAGTAGTAACAGTCATCATAGTTACTTGTGCGTATGTCATGTGGAGGACTTCCAATCACCCAGGTATTACATCTTTGTCCTGTTTCAGAATTAATTTATAATAAACTTTACTTTTTGGTAGTAAAAGAGCTAATCTTAGTTTATGTTTTTAACTCCAGCTAAAATATGGCACTCAATCAGATCAGCAAGGAATAGGAACATCAATGATTTCCAACGATTGAAAAAAGTTGAAACACTAGAACATCCAAGCCACAAAGTAATTGAAGAACTGTCACAAGTTAAACTCCAGGAGCTGTTACTGTTTGATTTTGAAAGGCTTGCAACAGCCACAAACAACTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACAAGGTACCTTAAAACAAAGTTATCATATTTGAATAGTTGTCTGTAGTTGTCCTCATAATATTTGTTTTCCCAGGGGAAACTGCAAGATGGTAAGGAAGTAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCAAGAAGAATTCATGAATGAAGTAGTGGTCATTTCCAAGCTTCAACACCGTAATCTTGTAAGACTTTTTGGCTGTTGCATTGAAGGTGACGAAAAGATGTTGATCTATGAATACTTGCCAAATAAAAGCTTGGATGTATTAATCTTTGGTTAGTTTTTTATCCCTTCTCTAGTATTTTTCTCATAACCAATTCCATATTAATTGTTTCTGTTTATTTAGGATACAATTGCTTAAGATGTAAACATTCATTGCATAAATAGGGAGTTTTCTTTGCAAGCATGCTAATCCAGGGCCTGTACATGACTCAGATTCATAACTTCCACTTCTAATATTGTGTTTTTAATAGTATAATTCTACCATTATATTTTAGATCCATCAAAAAGTAAACTCCTAGATTGGAGGAAGCGCTGTGGCATAATAGAAGGAATAGCTCGAGGATTGCTTTATCTTCACAGGGACTCCAGACTAAGAATCATACATAGAGATTTGAAGACAAGTAATATCTTGTTAGATGAAGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCTAGAATCTTTGGAGGGAGTGAAGATCAGGCCAATACTAACAGAGTTGTTGGAACATAGTACGTCTGCTCTTCTGTCCACCATAATTTATTTCAATACTTGGAGAATGACTTTTTAACATTTTAACGCAGTGGCTATATGTCCCCTGAATATGCAATGCAAGGACTGTTTTCAGAGAAATCAGATGTCTTTAGCTTTGGTGTTTTGGCACTAGAGATTCTAAGTGGAAGAAGAAATTCAAGCTTTTATGATGATGAACATGTTCTTAGCCTCTTGGGATTTGTAAGTCTCAGCAAGTCATTTCTCATTCACAGAATCATTTGTCTTTTGTTCATACAACATAAAAATGTCTGACTTTTTTTTCATTTTAGGCTTGGATACAATGGAAGGAAGACAACATATCTTCTTTAATAGATCCAGAAGTATATGATCCTAGTCACCATAAAGATATTTTAAGGTGCATTCACATAGCTCTTCTGTGTGTACAAGAACTTGCTATAGACCGACCCTCTATGGCTGCAGTAATTTCTATGCTTAACAGTGAGGTTGCGTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCTTGAGGCAAAATCTGCTGAATTCGGAGTCATCTAAAGGAAGTCATAGATTTTCCTCCACCAACACTGCTAGCATTACAACTATCTCTGGAAGATAG

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1575622