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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_19233 LG5 2319429 2320916 PREDICTED: receptor-like protein 2
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 2319547 missense_variant p.Phe373Leu
G/A 2319645 missense_variant p.Pro341Ser
G/A 2319876 stop_gained p.Gln264*
G/T 2319929 intron_variant
G/T 2319996 intron_variant
C/T 2320052 missense_variant p.Gly249Arg
A/T 2320072 stop_gained p.Leu242*
C/T 2320142 missense_variant p.Gly219Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_19233.1
MPSPSSSSSAYSLYNSYMVSNFMVSIIVPLFLFSLFVVHVSSCSQIDKLSLLAFSGNISTSPPFPSVNWSDSLDCCAWEGITCDGDLRVTHLLLPSRGLTGFISPSLTNLSSLSHLNLSHNRLSGGLQHQLFSLLSHLVVLDLSYNHLSGELPPFGIDNSGKNSSGAGIQELDLSSNFFNGTLPNSLLENLAAAAAGGSLVSLNTGLGACSKLERFRAGFNFLSGPIPSDIFDVVSLTEISLPLNRLTGTIGDGTMPPSLMNCVNLVVLNLRVNLLEGNIPAFNFSGFLSLTTLDLGNNYFIGGLPPTLYACKSLSAVRFASNQVEGEISPRILELQSLSFLSISTNKLRNVTGALTILRGLKNLSTLMLSKNFFNEMIPQDVNIIEPGGFQKLQVLGFGGCNFTGCININK*


CDS Sequence:
>Vu_19233.1
ATGCCATCACCATCTTCATCTTCCTCTGCATATTCCCTTTACAATTCTTACATGGTTTCCAACTTCATGGTCTCTATCATAGTCCCCTTATTCCTCTTCTCCTTGTTTGTTGTTCATGTTTCCTCTTGTAGTCAGATTGATAAACTCTCCCTCTTGGCTTTCTCTGGGAACATATCCACCTCTCCACCTTTTCCTTCTGTCAATTGGTCTGATTCTCTTGACTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAACAGATTATCTGGTGGTCTCCAGCACCAGCTTTTTTCATTGCTCAGTCACTTGGTGGTTCTTGATTTGAGCTACAATCATCTGTCTGGTGAATTGCCACCTTTTGGGATTGATAACAGTGGCAAAAATAGCAGTGGTGCTGGTATCCAGGAGCTGGATTTGTCCAGCAACTTTTTCAACGGGACACTTCCAAATTCTTTGCTCGAGAACTTGGCAGCTGCTGCAGCTGGAGGAAGTTTGGTGTCTTTGAATACTGGACTTGGAGCATGTTCCAAGCTGGAGAGATTTAGAGCAGGCTTCAATTTTCTGTCAGGGCCTATTCCAAGTGATATTTTTGATGTTGTTTCTCTCACAGAAATCTCATTGCCCCTCAATAGACTCACTGGAACAATTGGCGATGGTACTATGCCCCCGTCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTGAATCTCTTGGAGGGAAATATCCCTGCATTCAATTTCTCAGGATTCCTCAGCCTTACTACACTTGATCTTGGCAACAATTATTTTATCGGTGGTTTACCACCAACCCTTTATGCATGCAAATCACTTTCAGCTGTGAGGTTTGCATCTAATCAGGTTGAGGGAGAGATTTCTCCCAGGATACTTGAACTACAGTCTTTGTCTTTCCTATCAATTTCTACTAACAAGTTGAGGAATGTTACTGGGGCTCTGACAATACTCAGGGGGCTCAAAAACCTCAGTACCCTTATGCTCTCCAAGAATTTTTTCAACGAAATGATACCTCAAGATGTGAACATAATAGAGCCAGGTGGATTTCAAAAACTGCAGGTTTTAGGATTTGGTGGTTGTAATTTCACTGGTTGTATAAATATAAATAAATAA


Promoter Sequence:
>Vu_19233::LG5:2320916-2322916(-)
CTTTTTCTACTTTGTTGTCTACCATTTCTTCCATTTGTTTTTGTCTTATGCGTGAGAAATGTTGCTGCCCATGAGGTGCAAATGTGTTATGCCGTGTGGTGTTGTCTTTCTAAGCCACTTTGATTTCTTCTTCAACAAATGGTGGTGGCCCTTACTTCTTTTATGTTGTCTCCCACTTAAAAGAAAGAAGACTCCTCATTTGTGTGATGGTAGCCGTGAGTTAGCTTGGTGTTTTTCCTCATTTCCACTTGCTTCCAAAGACCATGCACCTACATGAGAACATGTGTCTCCCACTTCAATTTAATCCCTTCCAATTCCGTGCATGTGTTGGCCGTGAATGCTTGAACAATGGCAGCAGCTTTCTTCAAAAAAAAAAAACCGTGAGCTCCCTTGAGTCATGTGGTCTTCTTTCAACAAATTAATTTTCCAATGGACCTTAGCTTATTACAAATTCAAGAAAAATATTTATCAACACACAGAATAAATAAATAGAGTGCAGGTTCTTCTAACATAGTGTGTGAATGTTTTTCCAAATGTCCCACACTGGCCACCTGCTAGCAGGGTTTAGCTCTGCAACTCCTTTGTCTGCCTCATCAATAAACATCCTTGTCCTCTTTATCTGTCCCTTCATGAATTTACTAGGTTTATCTATAACTTTACCCAGGAAAATGTCATCATCTAAAAGCCTAGCTTTTGCCAATTCATCTTGTCCCTCCTCCTAGTTTACTTCCCCTTTGTTGACAATGGCATAGTACCTTATCTGCTACTCTTCTTTCTCTTAATTACGAATAATCTTCTGCAGATCAAGCTTTGTTTGTCAAATCTGCTTCTACTTCTTTTACTGCATTATTTGTTTAGGTGGATGATATTGTTTTAATTAGCAATGATATGGCAGAAATTAATCATCTTAAGCACATCTTAGATACCAAATTTAAAATCAAAGACCTAGGATCTTTAAGATACTTTCTCGGTCTTGAAATTACAAGGTCCAAATCTGGAATTCACATGAATAAGAGAAAATATATTCTTGAACTTGTCGATGACAGTGGTTTGATTGGTTCTAAACCTACTAACACTCCTTCTGATCCTTCTATTAAACTTATGGCAAATCATGGACAACTTTTATGTAATGCTGCTGGTTACTGGCAGTTAGTTGGCAAACTTTTGCACCTCACCATCATCAAGCAAGATATTGATTATGTGTACAACAACTCAGCCAATTTCTATGCAAACCTCTTGATACTTATTACAATGCTGCTCAAAGAATCTTTCATTACCTCAATGGATCCCCTGCTCATGGCTTGTTCTTCTTTGCTTCATCAGACCTTAGACTCTCGGCCTTTGCCAATTCAGATGAGCTTGCTGTTTGGATACCAGAAGGTCTATCATTGGCTTTTGAGTTTTTGTTGACTCTTCATTGATCTCTTAGAAATCAAAGAAGCAGACTACTGTTTCCTTGATGTAAGATACCTTTTTCTCAATTTGAATACAATGAGAATTCTTGCAAAATGTGAGAACTAAGAAAACTGTTGTGTCTGCAACCTCTATATAATATAACAACTAAACAACTATTTTCTACTTTCTTTAAGATCAATAGTAGAACAACAACTATATCAAAAATCTTTCTTTTCTTTTCTTGCTTAATCCACAGTTTTTCAAAATAAACATAAACACCAGATGAATTATATTTACTATGAACTGCAATGAGTTGTTACAGTGGTAATGATAATTAAAATCTAAATATTATCTATGTGTATGTATATCTAAATCCCCAGTTGTCAACGTCACCCTTCCACTTTGTCTCTCTCTCTCTCTCCCACCCTTCATTTTGCTTCCCTTGTCAATGGATGGTCATGGTCTTCCTTGCTCCCATGCCACCCCAACTATCTCTTCTTACATTGGTTCTTCACCCCCTTATGTCCCCCTCCTCCTCTTCTTTCTCATTTCCACTCCTCATGACCAACCATCACTTCAAACACTCCATTCTCTCAGTTTTTCTC


Gene Sequence:
>Vu_19233(-)
ATGCCATCACCATCTTCATCTTCCTCTGCATATTCCCTTTACAATTCTTACATGGTTTCCAACTTCATGGTCTCTATCATAGTCCCCTTATTCCTCTTCTCCTTGTTTGTTGTTCATGTTTCCTCTTGTAGTCAGATTGATAAACTCTCCCTCTTGGCTTTCTCTGGGAACATATCCACCTCTCCACCTTTTCCTTCTGTCAATTGGTCTGATTCTCTTGACTGCTGTGCTTGGGAAGGCATTACTTGTGATGGGGATCTTAGAGTCACACATCTTTTGCTACCTTCTAGAGGCCTCACTGGCTTCATCTCCCCCTCTCTCACAAACCTCTCTTCTCTCTCTCACCTTAATCTCTCCCATAACAGATTATCTGGTGGTCTCCAGCACCAGCTTTTTTCATTGCTCAGTCACTTGGTGGTTCTTGATTTGAGCTACAATCATCTGTCTGGTGAATTGCCACCTTTTGGGATTGATAACAGTGGCAAAAATAGCAGTGGTGCTGGTATCCAGGAGCTGGATTTGTCCAGCAACTTTTTCAACGGGACACTTCCAAATTCTTTGCTCGAGAACTTGGCAGCTGCTGCAGCTGGAGGAAGTTTGGTGTCTTTGAATGTTAGTAATAACAGCTTCATAAGTCATATTCCCACTTCCCTGTTTTGCATTAATGACCGTAACTCCTCCTCTCTAAGATTCTTGGATTATTCCTCCAATGATTTTGATGGTGCCATTTAGACTGGACTTGGAGCATGTTCCAAGCTGGAGAGATTTAGAGCAGGCTTCAATTTTCTGTCAGGGCCTATTCCAAGTGATATTTTTGATGTTGTTTCTCTCACAGAAATCTCATTGCCCCTCAATAGACTCACTGGAACAATTGGCGATGGTATAGTTGGCCTTACCAACCTCACAATTTTGGAGCTCTACTCCAATCATTTCACAGGTTTCATCCCCCGTGAAATTGGTAAACTCTCCAAGTTGGAACGGTTACTCCTTCATGTCAACAATTTGACAGGTACTATGCCCCCGTCTCTGATGAACTGTGTCAATCTTGTGGTGTTGAATTTAAGGGTGAATCTCTTGGAGGGAAATATCCCTGCATTCAATTTCTCAGGATTCCTCAGCCTTACTACACTTGATCTTGGCAACAATTATTTTATCGGTGGTTTACCACCAACCCTTTATGCATGCAAATCACTTTCAGCTGTGAGGTTTGCATCTAATCAGGTTGAGGGAGAGATTTCTCCCAGGATACTTGAACTACAGTCTTTGTCTTTCCTATCAATTTCTACTAACAAGTTGAGGAATGTTACTGGGGCTCTGACAATACTCAGGGGGCTCAAAAACCTCAGTACCCTTATGCTCTCCAAGAATTTTTTCAACGAAATGATACCTCAAGATGTGAACATAATAGAGCCAGGTGGATTTCAAAAACTGCAGGTTTTAGGATTTGGTGGTTGTAATTTCACTGGTTGTATAAATATAAATAAATAA

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