Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18997 LG4 70946415 70951049 PREDICTED: homeobox-leucine zipper protein GLABRA 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of trichoblast fate specification, epidermal cell fate specification, negative regulation of trichoblast fate specification, negative regulation of trichoblast fate specification, negative regulation of trichoblast fate specification, epidermal cell fate specification, epidermal cell fate specification
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding, lipid binding, sequence-specific DNA binding, DNA-binding transcription factor activity, sequence-specific DNA binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 70946863 upstream_gene_variant
G/A 70946874 upstream_gene_variant
A/G 70947277 upstream_gene_variant
C/T 70947294 upstream_gene_variant
A/G 70947300 upstream_gene_variant
C/T 70947390 synonymous_variant p.Ser549Ser
C/G 70947419 missense_variant p.Val540Leu
A/G 70947447 synonymous_variant p.Cys530Cys
G/A 70947543 synonymous_variant p.His498His
C/T 70948040 synonymous_variant p.Glu395Glu
C/T 70948211 synonymous_variant p.Leu338Leu
A/T 70948406 upstream_gene_variant
A/G 70948583 upstream_gene_variant
C/A 70948630 upstream_gene_variant
A/G 70948640 upstream_gene_variant
A/G 70949864 synonymous_variant p.His116His
T/A 70950043 missense_variant p.Asn86Tyr
G/C 70950239 intron_variant
A/T 70950265 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18997.1
MVVDGVEVRREDTVEISSDNSGPVRSRSEEDFDGEGAHEEDDDENNDDGDRSKKRKRKYHRHTVEQIREMEALFKESPHPDEKQRQQLSQQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELDKLKEENKAMREIISKSCCPNCGMVTATIDASMSIEEKQLLIENVKLKAEVEKLRATLGKCSPTSPASSAGHDEEENRSSLDFYNGVFGLEKSRIMEIVNRATEELIKMANMGEPLWVRSVETSREILNYDEYVKEFAVKNSSSDKPKTFIEASRDSEVVFMDLPHLLQTFLDVNQWKEMFPCLISKAATVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRCCKQLSDEQWAIIDVSIDKVEHNIDASLEKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTLYRTIVNSGLAFGARHWITTLQLQCERLVFNMATNVPTKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKFTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSVWLPVSPNALFDFLRDEARRSEWDMMSCGGSVQSIANLAKGKGRGNAVNIHKIESTENSVWVLQDSCTSGYESMVAYALVDFAGLQSVLTGCDSSNLTILPSGFSILPDGVEGRPLVIRSKQDEKGTEGGSLFTMLFQMLVNASPTAKLTMESVESATNLVSCTLRNIRTSLQCEDG*


CDS Sequence:
>Vu_18997.1
ATGGTGGTTGACGGCGTTGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGCTCATGAGGAAGACGATGATGAGAACAACGATGATGGTGATAGGAGTAAGAAGAGGAAGAGGAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGCTTTTCAAGGAATCACCACATCCTGATGAAAAGCAGAGGCAACAACTCAGCCAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACGCAAATCAAGGCAATACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTGAAGGAAGAAAACAAGGCCATGCGAGAGATCATCAGCAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCTTCCATGTCCATTGAAGAAAAGCAACTCCTTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAACTCCGAGCAACATTAGGAAAATGTTCACCAACGTCTCCTGCATCTTCTGCTGGTCATGACGAGGAAGAGAACAGAAGCTCTTTGGACTTTTACAATGGAGTTTTTGGGCTCGAGAAATCAAGGATAATGGAAATAGTTAACCGGGCAACTGAAGAGCTCATAAAGATGGCAAACATGGGAGAACCATTGTGGGTTCGTAGCGTTGAAACAAGTCGGGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGTTAAAAATTCGAGCAGTGATAAGCCAAAGACATTCATCGAAGCCTCGAGAGACTCCGAGGTTGTTTTTATGGATCTCCCTCATCTACTCCAAACCTTTCTAGATGTGAATCAGTGGAAGGAAATGTTTCCATGCTTGATATCAAAGGCTGCCACTGTTGATGTTATATGCAATGGAGAAGGTTCCAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGCTGAGTGATGAACAGTGGGCAATAATTGACGTATCTATAGACAAAGTTGAACACAACATTGACGCATCCCTTGAGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAACGGCCACTGCAAGGTGATATGGGTGGAGCACTTGGAGTGCCAGAAGAGCACAATCCACACATTGTACCGAACCATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAACCACACTACAACTTCAATGCGAGCGTCTGGTTTTTAACATGGCAACAAATGTTCCTACAAAGGATTCAACTGGTGTTGCAACGTTGGCCGGGAGGAAAAGCATTTTAAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGTGCATCAAGTTTCCATACGTGGACCAAGTTCACGAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCTGCAGTTTCTTCTGTGTGGCTTCCTGTCTCTCCCAATGCACTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGTGGGATATGATGTCCTGTGGTGGGTCAGTGCAGTCTATTGCAAATTTAGCTAAAGGAAAAGGCCGAGGCAATGCTGTAAACATCCATAAAATTGAATCAACAGAGAACAGTGTGTGGGTACTGCAAGATAGCTGCACAAGTGGTTATGAATCAATGGTGGCATATGCTCTTGTGGATTTTGCTGGTCTTCAATCTGTGCTGACAGGATGTGATTCAAGCAATCTTACCATTTTGCCGTCAGGATTCTCAATTCTTCCTGATGGGGTTGAGGGAAGGCCATTGGTGATTAGGTCAAAGCAAGATGAAAAAGGAACAGAAGGAGGGTCTTTGTTTACAATGCTATTTCAGATGCTTGTCAATGCTTCTCCTACAGCCAAGTTAACTATGGAGTCTGTGGAATCTGCCACTAATCTTGTCTCTTGTACATTGAGAAACATTAGAACAAGTTTACAGTGTGAAGATGGTTAG


Promoter Sequence:
>Vu_18997::LG4:70951049-70953049(-)
GAAATGACAAAGAGTTAGTGTCCAGTGTCCACTTTTCTGACTTTCATTCTGATCTAGTACAATTCCAACACACAGGTTTATCTTATTTAATATTTTTTTAATGCATGCAAAAAATATTAAATATATATATTTATACCCTAATTTTTTTACTGAAAATATTTATTACTTTATCAGGTCTTACATACAATACACTTGTAATTAATTCATGTCTATTGAAAAAAATCAGTTAATTTAAAGTAGCATTAAATTTATTTCTAACTGCAGCAGTACTTTCTCTAAGGTTATCTTTAAACAATTAATATGTGAAACGAGAACAGTAGACTTTTACCTTTTAAAACAAAACATTTTAATTCTCTGATCTTTGTGACTGATGAAAAAGAAAAAAAATAATTACATCTATAGACTAAAATGATTAAATATTTTAATAAAATAATTAATGTAATAATTTATTAGAAGAAATTACTTACGAAAATGACAGAGAAAATTAAATAACGTGTCTGTTTATATAATAACAGAGTCAATGCTTTTTTTACCATGCATAAAATAATAACTTATATTTTTAAAGTAATAACTTTTATTACACAACTTATACTTTTATTTTCCTATAAATTAAATGTCTATATATATGTTAAAAATATGGAAAAGAACTTTTCCTTCATAAAACTATAATTTATTGTTCGAAATATGAATTTTAAATTATGTTGGAAAAAGTAATAGTATATATATTATCAAACCATAAACTTATGTTAAAATTAATTAAAAAAATAAAAATATTTATAATATCATCACACTATATTAAACTAAAAATTGATATGTAGCATAATTATTTGAGTGTTTTAATCTCTAAAGAATAAATATTTAACACACTTATTAATTAGTATTTAATTACAAACAAGGAAATTATATTAACACTATTTTGGTAAACTATTATTCATTCAAAGTATATGATTTTTTTTTATAACAACTAATTTAAAACACATATACAAATCATTTCCGATTAATTGTCATTAAATATTTATATATTAATGCCTATTAAACTCTTTATCTAAATTCGTCGAGATCGATTAATAAAATATTAAATTTATCAGTAATAATGAAAAATTAATTTTTATTAAATATACTAACAAATTAAATAATTTAAACAGTATCTATATTTTACATCACTAAAATTTCAAAGAATAACGCAACACAATAAATTGACCTTCATTGAATTTTATTAAAAATTAAATAACTTAAATTCTAGATATAATGACTTTATTAAAATTTCAAGAAATAATTTCCACACAATAAAATAGACTTATTGATTTACCATTTCTACATCTAGCCATTAAATAATTAAATACTTACGCATTAAGTTTTATTAGGAAATACTGATAAAATTAATTACACATACTATATTAATGACAACACTATAAATTCTAGAAACAATTCTATACAATAAACTCTTATTTCATTAAATACTATTTTGTGTAATAAATATCTCTCTATTTTCACACAATTTGTTCTGACAGTCTGTTTTTATATTTATTTGAAAAGAATAATAAGAGCGTGCAACATGAGAAAGAGTCCTTAAAACCAAACATCATTTTCACCCATTCACAGAGAAAAAAAAAAAACAGCATTCGCCATTTTCGCTCCTTAAAAAAACATCATCAAGAACACCGAAAGCACAGAAAGCACAGTAAACGTGTTTGCCAATGGGAGTTAACATGTCAAACACACCACCTCACACCAAAGACTTGTTTTCTTCTCCAACTCTCTCTCTTAGCCTAGTAAGTAATCAACTTCCTGTATCTATATATCTATATATATATCTATATATATATATATATATGTATGTATGTATGTATATATGCATATATTTATTTATTTATGTATATAGTGTGTATGAAATTAAATTAAACTAATTACAGTTACTTTTTGTTGTTTTTTTTTCTGTTTGATTGGATGTGAAGGCTGGGATTTTCCGGCATGCCGAGGAGGCGGCGACGACGTCCGGC


Gene Sequence:
>Vu_18997(-)
ATGGTGGTTGACGGCGTTGAGGTCCGGCGAGAGGACACTGTTGAGATTAGCAGTGACAACTCAGGACCTGTGAGATCCAGGTCAGAAGAAGATTTTGATGGAGAAGGTGCTCATGAGGAAGACGATGATGAGAACAACGATGATGGTGATAGGAGTAAGAAGAGGAAGAGGAAGTATCACAGACACACCGTTGAACAGATCAGAGAAATGGAAGCGTACGTAATCTCTCTCCGTATATGTCTACGTATATTAATTTCGTATTGAATAAAGTATCACCGAGACTGAGCATTATATATTTATTGTTAGAGAGAGAGACATAGAATTAAGATTATAAGAAGATTTTCTGATGAATTATCAGCTTATGAGTTGTGCGATCATTTTGTTTTTGCACACAATCGATCAAGAAACATTATTGAATTCGAGTTTTTAATGTTGAATACTGAGATACTGTTTATAACAACACTGTAGTAGTTAATTCCAACATGATTGTCGTAATACGTGTGATCTGCACGAAAATGTTAGGTGTTAGCTAAAAGTGGTGGCAGTGTATGTAACAATAAAATGGTTTCTTCCAAAGTTAAATAATTCACATACCGACATTGCAAGTGGGTTTTAAAGTATATATAGTTTATATATAGAAATAACTGGTATGTGTGACGTACTCCTGCAAAAATTATGGGAAAAGTTTGCGATCGACATCATATGGTCAAAGCGAAAAGATGGTGATTAAAGCTAAAGCTTTGCTTAATTATCATTTTTAAGTACTTTTGCTTTGTCGGTTAGTTTGTTATCTTATGCTAATGTAAAGCACTTTGCCTCTCTTTTCACTTGATTTCGTGGTCGTTGCATTATTAAATTCGATCTGTGCATTAATTGTTGTTGGATCAGCCTTGATACGAAGCTTGTAGTGAAAGATAAGACAGCAAACAAAGCTGACAGCTGACATGAATAATGTACTGATGTAGGCTTTTCAAGGAATCACCACATCCTGATGAAAAGCAGAGGCAACAACTCAGCCAGCAACTTGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACGCAAATCAAGGTATTAAATTTTTCACCTAATTTTTCCTCAGGAATAATGCATTTTCAAATAAAGTAGTATGTTATTACCATTGCCAATTTTGCAGGCAATACAAGAGCGCCATGAAAACTCATTGTTGAAGACAGAATTAGACAAACTGAAGGAAGAAAACAAGGCCATGCGAGAGATCATCAGCAAATCTTGTTGCCCCAATTGTGGCATGGTAACGGCTACCATAGATGCTTCCATGTCCATTGAAGAAAAGCAACTCCTTATTGAAAATGTCAAACTCAAAGCTGAGGTAATGTGTATGTACTCCAAATACAAGGAACATTGAAATAGAAAACATAGCAATGTGTGCATAAAATCTTATTAATTAATCCTTATGTAGGTAGAGAAACTCCGAGCAACATTAGGAAAATGTTCACCAACGTCTCCTGCATCTTCTGCTGGTCATGACGAGGAAGAGAACAGAAGCTCTTTGGACTTTTACAATGGAGTTTTTGGGCTCGAGAAATCAAGGATAATGGAAATAGTTAACCGGGCAACTGAAGAGCTCATAAAGATGGCAAACATGGGAGAACCATTGTGGGTTCGTAGCGTTGAAACAAGTCGGGAAATACTTAACTATGATGAATATGTGAAGGAGTTCGCAGTTAAAAATTCGAGCAGTGATAAGCCAAAGACATTCATCGAAGCCTCGAGAGACTCCGAGGTTGTTTTTATGGATCTCCCTCATCTACTCCAAACCTTTCTAGATGTGGTAAGTGTAAGACACGTACGAGGGTGTATCAATATACATAAAGAATAATGTTTCATTGGTGATGTTAATTACCATGAGATATATTTGTGTTAACTCTTGCTCCATATGAATGTGCTTCAAATAAAGATCGAATATAAGTATTTCTCTCCTTGCAGAATCAGTGGAAGGAAATGTTTCCATGCTTGATATCAAAGGCTGCCACTGTTGATGTTATATGCAATGGAGAAGGTTCCAACAGGAATGGTGCAGTGCAATTGGTAAGAGGGAAGATGTTTTAATTTCGCAGTGTTAGGTAGTCATAAACTACAGATACGTACAAAATAGGTGCCTCGTTTATCTTGAACCATTCATTTCTTCCTCATGTTAAAGCGTGGATCTTTTTTATTTGTTCAAGTGGTCCAAATGACAAGCACAAGAAACAGACAGGACTTCTCTTTAAAGTGACCCTTCCCACTCTTGTAATTTTCAACCAACTGTTATTCTAGTTTAAGAATAAAAAACCAAAAACATAAGACACTTTAGCTGCATTTAGATTATGATTATAGTTTAATGTTCTTAACAGATAACGTTTTATCGTTGGGAAATGCAAGTTCAGATGCCTTTTTTTCTCTACTGTTAACATAGCCTTGTCTCTCAGAAAATGTTGATAAGGACATAAAAAGCTTAAAAGAATACACAGAAATGATCAAACATACATCAATTATATAAATTCTTGGCACTTTTTCTCGCATTTCCCAATACCGAATCCAACACAAAATCTCTCACTCCATCCCTCTTTATCACCAGAAAAAGATCTTTCTCTCCCTAGTCACATCTATTGTATTGTGGAAATTCTCTTTTATTCTCTATTCAACATATCAGGATAGCAAGACAAACATGATACTATTGTTCAGGTCCTTAGACGTGGAAAATAAGACTTTCTCCATCAAAGTAAAGAACGAGGTTGTTTTGTTGACATGAAAGGTCTTAATAATAATAAGCATGACCTTGTGGCTGCAGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCACCAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGCTGAGTGATGAACAGTGGGCAATAATTGACGTATCTATAGACAAAGTTGAACACAACATTGACGCATCCCTTGAGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAACGGCCACTGCAAGGTATATGAAAAAAAAGTCTTTAACATTTTATGTGAATTTGATCATACTATATATATATATATTGATGTTTCCTTCGGTTTAAGGTGATATGGGTGGAGCACTTGGAGTGCCAGAAGAGCACAATCCACACATTGTACCGAACCATTGTCAACAGTGGTCTAGCTTTTGGGGCAAGGCATTGGATAACCACACTACAACTTCAATGCGAGCGTCTGGTTTTTAACATGGCAACAAATGTTCCTACAAAGGATTCAACTGGTGAGCACTGAATTCCAAGGAGGCTTTGGTTGACAGATTAAACAAAGGATACAACAAATGTTCCTACAAAGTCTTTTAACATATGATGATGATTAAATGATAGGTGTTGCAACGTTGGCCGGGAGGAAAAGCATTTTAAAGTTGGCACAAAGAATGACATGGAGTTTCTGCCATGCAATTGGTGCATCAAGTTTCCATACGTGGACCAAGTTCACGAGTAAAACAGGAGAAGACATAAGGATTAGCTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCTGCAGTTTCTTCTGTGTGGCTTCCTGTCTCTCCCAATGCACTGTTTGATTTCTTGAGGGATGAAGCTCGTCGAAGTGAGGTACAAATCTGGTGCAACCTCGTCATTTCTGTCAACATAGGACTTTATAACTCATATTATTTCTAACACAACCGTTCTATGTTTTGCTGTTCTTTTTCATATTCCTAGGCTAGATGTTAAGGATTATTGTTTCAGACAGTGAAATCCATTTAAAAAACATTTTCTTTTTCATGTGAACAGAAATATTAATAGTGTCACAACACAACAATACTTTTTTTGTTATTTCCATTAGAGTTAGATGCATCTGGATAATAGAAAGTTTGCGGAGTTCCAGAAAAGTGGATCCACCACCTTCTGTCTTTCTATACATATATCTATAGCAGCAATTTTATGCAGTTTGGTGAGTAATAATTGCAAATGGGGCCACTGTGTTGACTGCTGTCAATTATCTTTATCACAGTGGGATATGATGTCCTGTGGTGGGTCAGTGCAGTCTATTGCAAATTTAGCTAAAGGAAAAGGCCGAGGCAATGCTGTAAACATCCATGTAAGTGTTTCTACTACCATACCTACCTTTTTGGATTGAATTACAGAAAGAATTTAAAACATGGTTAGTGGTTAAGCATCTGATTCCTCTTACTTGGCAGAAAATTGAATCAACAGAGAACAGTGTGTGGGTACTGCAAGATAGCTGCACAAGTGGTTATGAATCAATGGTGGCATATGCTCTTGTGGATTTTGCTGGTCTTCAATCTGTGCTGACAGGATGTGATTCAAGCAATCTTACCATTTTGCCGTCAGGATTCTCAATTCTTCCTGATGGGGTTGAGGGAAGGCCATTGGTGATTAGGTCAAAGCAAGATGAAAAAGGAACAGAAGGAGGGTCTTTGTTTACAATGCTATTTCAGATGCTTGTCAATGCTTCTCCTACAGCCAAGTTAACTATGGAGTCTGTGGAATCTGCCACTAATCTTGTCTCTTGTACATTGAGAAACATTAGAACAAGTTTACAGTGTGAAGATGGTTAG