Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_18793	LG4	65271388	65274108	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	defense response to bacterium, protein phosphorylation, defense response to bacterium, defense response to bacterium, response to reactive oxygen species, protein phosphorylation, response to reactive oxygen species, protein phosphorylation
Cellular Component	is active in	plasma membrane
Cellular Component	located in	extracellular region
Molecular Function	enables	protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity, kinase activity, protein serine/threonine kinase activity, protein kinase activity

SNP	Position	Effect	Amino acid change
C/T	65272742	intron_variant
C/T	65272826	intron_variant
C/A	65272863	intron_variant
A/G	65273008	intron_variant
A/G	65273024	intron_variant
G/A	65273043	intron_variant
G/A	65273048	intron_variant
C/A	65273060	intron_variant
C/G	65273069	intron_variant
C/A	65273098	intron_variant
C/G	65273452	missense_variant	p.Met219Ile
A/T	65273523	missense_variant	p.Phe196Ile
A/G	65273524	synonymous_variant	p.His195His
T/C	65273550	missense_variant	p.Lys187Glu
C/A	65273575	missense_variant	p.Met178Ile
T/C	65273578	synonymous_variant	p.Gln177Gln
G/C	65273588	missense_variant	p.Thr174Ser
T/A	65273667	missense_variant	p.Ser148Cys
T/C	65273690	missense_variant	p.Lys140Arg
C/A	65273761	missense_variant	p.Glu116Asp
G/A	65273783	missense_variant	p.Ser109Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_18793.1

MASLIRLKLFSMLMFYLLGTLNILATETASTFRHYDCTDKPKFSPKSSYQLNLNKLLSKLTSKVNTTNYYNTTVSGTNKQDTVYGLFTCNGYMEKCGECVNTSIQTLKSKCVFNKEAIIWTHECMVRYSNRFFYNTTEKKPSWCVKNSEDYEGELDIFNRMLSSLMEDLLTAATEAQMGSVKFAVKKITFSQDKHFFGFAQCMPYLSKENCRKCLRDAMNFLQTCARGKIGGRVIYPSCIVRYDHYLFFPLLRGGEEISAELNSLQFELSPQNHRKLSWSERYEIIRGIARGILYLHEDSHLNIIHCDLKPSNILLDNKMNAKISDFGLARIISIDQMQGNTSIISGTYGYMSPEYAMLGQFSMKSDVFSFGVIILEIISGKRNVDGNGKDLDDLLSHGNPDQRPIMAKIASYFSCDQVGKLPLPQEPAFFMRGKTETKDF*

CDS Sequence:
>Vu_18793.1

Promoter Sequence:
>Vu_18793::LG4:65274108-65276108(-)

CCAAGGGATGAACACCTCCTTCGAATGTTTCACGAAGAATGAACACTTCCTTTGAATCTTCACAAAGGATGACAAGCTTCACTCAACAACAACATCACTCAATCACACTCCTAGTGAAAGTTCTCGCTCTATGCCAACACCAAGTTCTCAAAGCCAAAGTAAGGGTTACACAATCCCGAAATCATACTTTTCATAACTAAAAAATGAACAATTATGTTTCCATGTTTATCGTGTGTTAGAATGAGAATCTAAATCATCTTTATAAAGACCTCACTCAAGGACACCTCAAAAAATCCATTGTTAGCTTTTCTTGTGTGATAATTGATTATCCACTTATGTTAATCGATTATACATTTAATGAATGCACAATGGCAAAAAACATGCCTAAAAACTCCAACGGCTAGTCGTGATAATCGATTATGGTAAGTCATAGTCGATTATGGATAATCGATTATCATAGGTTGGTAATCGACTATTCTAGAGACAATGAGTTTTTAGTAACCTTTAAAAACTCTTTGTGATAATCGATTATTTTAAGTGTTAATCGATTATTACAGAGTTTTTGTGACTCCAAAACGAATTTTAAAGCATACAATACATGGAATCAACAACAAATAAATCTCTATACATAAATCTACTTATTACAAAAGCTTTAATACATAAAAACAAGTCTTCATGAAGGTCGTCTTGCAAAGTGAGCACTTGAGTAGAAGAGTCAGTGGTCCAGACATCATACATCTAACCATTCATAGAGTAGATGTATAGTCCATTCAACTTGCCATAAATCAAATGTACTTTTTTGTTTATAAAACAATTTATTTCTTCATTAAGCTTATAATCTTAATTTCTCACCGTCACTAAAAAGTCATTAAATCAATATGCTAACATCATCCTTAAGTCCATTAGATAATCTATTATTATATCAATTATAAACGAGAGCTTAGTTAAAGCTGCACAAAACACAAATTAGAAAGTTCGAGAAGCTTTTATGTATTACATCATATAATCAAAATTCAACTTATAGATGGTCCATCAAACCATCTAATGAAATTCAATCAGACTAGACAGTTTAATTAGACTTGTCTAGACAAATCTAATTAGGAAGTCTATCTTGAACATCTCTCAGTACTTTAAAAATTAATTTTAATCAATGTTTTAGTTAAAATTCAATTAATATGAAATAAACAAATTTAAGCTAAAAAAGTGAATTTAAACTCAATTATAATTCAAGCTAAAATTAAATATTTTAAATGTGATAAAAAAATGTATTAAGTTTAATTAAAATGGGTCTAAACAATTATAATTGACATTAACAAAAACAACATCACCCATTGAGAAAAAACTTCGTACTACCCATCAATCAAAATTGATTAAAAAAATCTTCAATACTAATATTTTTTTAATTATTAATATTTTTTTGACGTTGAAATAGCATTTTACATCTCTAATAAGCAATACTTTATCTAAAAGAGAAAACTATGATTTAATAAATTTGAATTATTTAATTTAAACAAAATATTTAGAAAAATAAAATAATTTGAAATGAGATTAAAATATACTTCATTATATTAGAAATAGTGAAGTTTTCTATTAAAGGTAATATTTTTTTATTTAAATTTCAAAATAAATAAAGTTTAACATGTTTGTTACCCCTGATTTTTGGTTTATTTTCTACCATCTTTTGATAATTTCTCATTATAAATTTTAAAAAGTTTTGAAAATATAATTTCTATCATGTAAGATGGATCACACTTACACTTAGCATGTTAATTAACATAGATAGCATCCTAAAAAACAACGAACAAATATTATCTCTATACTTCAGACACAAAAAGTAAATGAAAGAAAAATAAGCTTTTAACATTTTACTTAGTTCACTCAAGACACATATATATTAGCTTAAAATAAAGACTAATTATTAAATCCAAATACTTCTTGAAGATTAATCCAGCTGTGGTGTATCATAGTATTAACATTAAGCAGAAGGAATATCCCAAAAC

Gene Sequence:

>Vu_18793(-)

ATGGCTTCTTTGATCCGTCTGAAATTGTTCTCGATGCTTATGTTCTACTTACTTGGCACCCTTAACATTTTAGCAACTGAAACAGCCTCAACTTTCAGGCACTATGATTGCACAGACAAGCCAAAGTTTAGTCCCAAAAGTAGTTACCAATTGAATCTGAATAAACTCTTATCTAAACTTACATCCAAAGTTAACACCACCAACTATTACAACACCACAGTGAGTGGAACAAACAAACAAGACACTGTCTATGGCCTCTTCACGTGCAATGGATATATGGAGAAATGTGGAGAATGTGTGAATACTTCAATCCAGACACTTAAATCAAAGTGTGTCTTCAACAAAGAGGCTATAATTTGGACCCATGAATGCATGGTTCGCTACTCAAACAGGTTTTTCTACAACACTACTGAGAAAAAGCCATCATGGTGTGTTAAGAACAGTGAGGATTATGAGGGGGAATTGGATATTTTCAACAGAATGCTGAGTTCCTTGATGGAGGATCTTCTGACTGCAGCCACTGAAGCTCAAATGGGTTCTGTTAAATTTGCTGTGAAGAAAATAACATTCTCTCAGGACAAGCATTTTTTTGGCTTTGCTCAGTGCATGCCATACCTCTCCAAGGAAAATTGCAGAAAGTGCCTTAGGGATGCCATGAATTTTCTTCAAACATGTGCAAGAGGCAAGATAGGAGGAAGAGTTATATATCCGAGCTGTATTGTTAGATATGATCATTATCTGTTTTTCCCACTTCTTAGAGGTTAGATCGTACTTTAATTATGTGTATCCTTTGTTTAACATATTTCAGAGAAATAGTTACTTATGTTGATACTAATCTCTATTGCAGGAAAAAGAAAGAATCTGGGAGTAATTGCATCAATCATATTTTTTCATGGCCTTGTTCCAGTTATTGTTTTGTTTTTTGTTTGCTATTTGTTACATAGGGAGTTAAGGAAGGATCTCAAGCACCGGAAAGGAAATTGTAATGAAGAACTGGAAACAATCTTCATGTCTATGATCATAGTTCCATTCTGTTCAAGTTTACTTAGCAGTGGAGATTCTGTTCTTCACTGAACTACTGATTTATAACTGACTACATTTTTGGTTTAGGTGGAGAAGAGATTTCAGCAGAATTGAACTCTCTGCAATTTGAATTGAGTACTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACAAGATAGGGGAAGGTGGTTTTGGAGCAGTATACAAGGTTGCTAACTGATGCTTTGTGTTAAACAGTAATGGAGAAATTTTGCTGCAATGATCAATTTAAGGTTTATTAATAGCATGTATATTGCAGGGTGTGTTTTCAAATGGACTTGAAATAGCAGTAAAGAGGCTGAAGAAAAATTCCAGTCAAGGAGCTACAGAATTCAAGAAAGAGGTTTTGCTAATTTCCAAACTTCAACACAGAAATCTTGTGAGACTGATAGGATTTTGCGTGCAAAGGAATGAGAAGATACTGATTTATGAGTTTGTGCACAACAAAAGCCTTGATTACTACCTATTCAGTATGATACTTTAAACCTTATCTTTGTTTTCTTTTTCAAGCATTTCTGATCATTAAAAATGGTTTTGTCTCATGTTAAATTTTACAGGCCCTCAAAATCATAGGAAATTAAGTTGGTCCGAACGTTACGAGATTATAAGAGGAATTGCACGAGGAATTCTCTATCTTCACGAGGATTCTCATCTTAACATTATACACTGTGACCTTAAACCTAGTAACATTTTGTTAGACAACAAAATGAACGCAAAAATATCAGATTTTGGATTAGCAAGGATTATTTCCATTGATCAAATGCAAGGGAATACAAGTATAATTTCTGGAACATAGTAAGCTTTGATGCTCAGAAACTTTCTTCTCAAACAACACAAAGGAATTGTTTGGTTTCTGATGATGAGTTTGTGAATTTATTACTGTTTTGCAGTGGCTACATGTCTCCTGAATATGCAATGCTTGGCCAATTTTCTATGAAATCTGATGTTTTTAGTTTTGGAGTTATAATTCTTGAAATAATCAGTGGGAAGAGAAACGTTGATGGGAATGGAAAAGATTTGGATGATCTCTTGAGCCATGTGAGTATCTTAATATTAGATTCCAAGAAAAATATGAGTAACAGGTTCTTCAACATATTTTAGTATACTTCTAAACATTGAATGAGAATCATTAGATATTATAAAAGTTATAAAAATGTTAAAAGGGGAATTTTAAACCTAATTCAATTCTACAAGATAGGGTTTGTTATCACTTTTAATCTGTAAATTGAATTTATCACTGGTCAATGTGAAATTTCTAACCTTCACTTTTGATTTGATGACTCTTATTCATGATTTTGTAATTTCTCAATAGATTTAACTAATAAGAAGAGTTTTGTGAAGATGTTAAAGAGCATTGATATCATGGAAAAAGATAAATGAGCATTTATTTAGCATCTTAATTGCAGGTTTGGAAGAAGTGGAAGAAAAACAGAGTACTTGAACTGTTGGATCCCTCATTACCACACTCCTTGTCTGAAACAGAAATCAATAAGTGTGTACAAATTGGTCTATTATGTGTGCAGGGAAACCCAGATCAGAGGCCTATCATGGCAAAAATTGCTTCGTATTTTAGCTGTGATCAAGTTGGAAAACTGCCTTTACCTCAAGAACCAGCATTTTTTATGCGTGGAAAAACAGAAACCAAGGATTTTTAA