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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18726 LG4 63866461 63872226 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 63867311 intron_variant
T/A 63867994 intron_variant
A/T,G 63868195 intron_variant
T/A 63868224 intron_variant
C/A 63868279 intron_variant
C/T 63868325 intron_variant
T/G 63869483 intron_variant
T/A 63869885 intron_variant
G/A 63869969 intron_variant
T/A 63870039 intron_variant
C/T 63870047 intron_variant
G/T 63870405 intron_variant
T/A 63870555 intron_variant
T/A 63870603 intron_variant
A/T 63870913 intron_variant
C/T 63871100 intron_variant
T/C 63871732 intron_variant
G/T 63871743 intron_variant
C/A 63871745 intron_variant
T/A 63871749 intron_variant
G/A 63871767 intron_variant
A/G 63871768 intron_variant
G/T 63871778 intron_variant
G/A 63871804 intron_variant
A/G 63871817 intron_variant
C/T 63871861 intron_variant
T/A 63871877 intron_variant
T/A 63871879 intron_variant
T/C 63871893 intron_variant
T/C 63871903 intron_variant
G/T 63871904 intron_variant
A/G 63871923 missense_variant&splice_region_variant p.Tyr102His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18726.1
MKMKRLLKTYRGSKGQQQRQRSGGGAAGTMAKAAHGENTPVVRARNRATRLGQRFAGDNGGTTTRWWTHGEDNNGALVVEARPETVVATEKRKHREVLNQNLIEMHAFDSFGFLFSKAEINDLTARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILSDTIQLLKDLTSQVGKLKEEYATLNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQQLRTIFPWTAMDHSVVMAPPSYPFPMPVAVPPGSIPMQPFPYFTNQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGCRSNVSEKPESKSKSSRESKAEKNEDSNDVTTDLQLKTPGSSADQLQIQSGRHCNSNAADSNLSSDSGFVCVHVLQDLSSGQRKSGKLSRRESSCCSEGNTLGRCSSSHSAQDSSSSSAVASRKDNE*


CDS Sequence:
>Vu_18726.1
ATGAAAATGAAAAGGCTTTTAAAAACTTACCGTGGCAGCAAAGGACAACAACAAAGGCAGCGGAGCGGCGGTGGAGCGGCGGGAACGATGGCGAAAGCAGCACATGGAGAGAATACTCCTGTAGTTCGTGCAAGAAATAGAGCCACCCGACTTGGACAACGCTTCGCCGGAGACAATGGAGGCACGACGACACGATGGTGGACGCACGGAGAAGACAACAATGGTGCCTTGGTGGTGGAGGCTCGCCCAGAAACGGTGGTCGCCACGGAGAAGAGAAAGCATAGGGAGGTGTTGAATCAGAACTTAATTGAAATGCATGCTTTTGACAGTTTTGGTTTTTTATTCTCCAAAGCTGAAATCAATGATCTAACTGCAAGAAAGACTCAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAGCAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAAGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTGGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATATTTCCATGGACTGCAATGGATCATTCAGTTGTCATGGCTCCACCATCATATCCCTTTCCAATGCCAGTGGCAGTACCTCCTGGTTCAATCCCCATGCAGCCATTCCCCTACTTTACTAATCAACATCCTGCAGTCATCTCTAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTACGTTTCACCTCCACTTCATCCAGGCTGTCGGTCCAATGTGTCTGAAAAACCAGAGTCCAAAAGCAAATCATCCAGGGAGAGCAAGGCTGAAAAGAACGAGGATTCTAATGATGTCACTACAGACCTTCAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGTTGCAAATCCAATCCGGGAGGCATTGCAATAGCAATGCTGCAGACAGCAATTTATCATCGGATTCAGGTTTTGTTTGTGTACATGTTTTGCAGGATTTATCATCCGGACAAAGGAAATCTGGGAAGTTGTCAAGAAGGGAAAGCAGCTGCTGCTCGGAAGGGAATACATTAGGTAGGTGTTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTGCAGTTGCAAGCAGAAAGGATAATGAATGA


Promoter Sequence:
>Vu_18726::LG4:63872226-63874226(-)
GTAATTCTTGATCAATAATTTTCCATTGCTTTGAATCAGCTGGATGACGAAGCAGCCCATCAATTGTTCTCTCATCTGCATGTCATCTTAGGTTTTTAGCGTCTTTGGAATTCGCGAACAAACGCTTAAGTCTGGCAACTAGTGGAAGGTACCAAACTACTTTCAAAGCAGAACCATTCTTTTCTGTGTGACCACCATCTTCACTGTTGTTTTTTGACTTGTATCGTGATAACCCACATTTTGGACACTTTATCAAAACTTCATCCTCATTCCTATATAATATGCAATCATTCGGACATGCATGTATCCGTTTATATTCCATACCCATTGGACAAAGAATTTTTTTTTGCATCATAATTACGATTGGGTAACGTATTTCCATCTGGCAGCATGTCATTCAACAACGACAACAATTTTGTAAAACTCTTATCACTCCATCCATTGCTCGCCTTTAAATTCATGAGTATTAACACCACTGACAACCGTGTGAACTTAGTTGAACCCGCATACAAAGGAGTCTCCGCATTAGTGGACATCGTTTCATACACATGCGCTTGGGCAATAGCTTCTGCGCCAGCATCGCGGATCATGTCCTCTAAGTTGTCTTCTTCAGCTTGATCTTCCATATCCATTGTGGAATCATAAACATTTTCAGTTGGAGAGACAGTTGGAAAGTCTGTTAATTCGCCGTGCCATATCCATGTTGAATAACTTCGTATGAAACCATCACATATAAGATGTTCCCTAATATCAGTTGCGTTCAACTTCCTCCCATTCAAACAATTCACACAGGGACATCTGAACTTGACTTCATCATCACCACTTGTACTCGCATTACGTTGCGCAAACTTTATAAATTCTTCTACCCCTCTCTGGTACTCAGTGTTGATGCGTGGTAAATTAATCCACCCTCTATCCGTACGCATATTTACTGAAATTGTTTACACAATTTCAATAATCTTGAATGATCACTTTGATCGTGTTTGTATTCAAGGTGTGACCCTATCCCATTCAAGAAGATTCACTTTTTTTAGTTTATTAAACATATCAATTTTAAACAACATATCTTAAATTTCACGAAATTTTGCCAGCATTTCACATTGGTCTTCAGGTTACATGAAGTGAAAGTGATTATAAATCACAATCAAATATGCACCCGAAGATCAATACAAAACACAACTACAAAATTTCATGAAATTTAAGACATGTTTATTAAAATTGATATGTATTAATAAACTATGAAAAAGTTATTACTCTTCTTAAACTATCCAACCGGACAATTCAAGATTCAATACTTATAAATTATTATTACCATCTCCTTTCTATTCATTTTTAAAAAGTACATTTGTTCAGAAAAATCTGGAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACGTGTTGGCCTAGAGTCAAGTGCTTCATGACTCAAAACACAAGTTGTTGAGTTGAATCTCAAATATCTTTAAAAAATGTATGCATTTTTTTCCATTAGAATTCCACTAAACTGGTATCATGTCAAACCAAAGGGTTTTTTAGAATAATGCACAAAAATCATATTTTCTGATTCGTGAACTGTTGCATATTCAAAGCAAATTGCACCAGAATTAATAAACTGTTAGTGCTTAACTATATTTATAATTTGGGAAACACCTTTTACAATCTGAGCAAAATCTAAGCTACCAAACTCATGATTTTCTTGCAATTGACTCATGCATAATTGGGACCTTTTCTTGTTTGTCTCGGATCACACGCGCATACACACTGTTACAACATACACTTACATCATCGTTTCCAAAACTCTTAGAGCAGATAACAACAGTTTCAGAGTGGGAAGCTTATAACGAATCCAAGCAAAAAGCAACATGCAAACATTCCTTTCTTCGTTCAAACCAATATCAATCGCCGCAGAAAA


Gene Sequence:
>Vu_18726(-)
ATGAAAATGAAAAGGCTTTTAAAAACTTACCGTGGCAGCAAAGGACAACAACAAAGGCAGCGGAGCGGCGGTGGAGCGGCGGGAACGATGGCGAAAGCAGCACATGGAGAGAATACTCCTGTAGTTCGTGCAAGAAATAGAGCCACCCGACTTGGACAACGCTTCGCCGGAGACAATGGAGGCACGACGACACGATGGTGGACGCACGGAGAAGACAACAATGGTGCCTTGGTGGTGGAGGCTCGCCCAGAAACGGTGGTCGCCACGGAGAAGAGAAAGCATAGGGAGGTGTTGAATCAGAACTGTAAACCCTTCTATTTTACAGTGCAGTAGAAGAAAGCAAAGCAATACTGCCTCGGTTTTACGACTAACCGAGGCCTAAACAGCTTAAATAAATTTCAAAATAAAGTTATATGCTTCGGCTGGCTTCCAAACAGAAGTAGTAGAGCGTTTCGGCATCGGTTCGGGGAAAACCGAAGCAGTCTATGTGGACAAAATGCATTGACACAGACATTTGTCAGATGAAAAGCCTAAACACACAGACGTTTACGCTTCGGTTAGCTGCTATAACCGAGGTCATATCGGGTTTAGGCATCGGTTCTGTGTGGAGCCGAGGCGATATCCCCAGTCAGTCTGACTTGCAGAGGTTGGTTGAGTGGCAGAGAGTTTTATGCCTCGGGTGGCTAAGACAATCGAGGTCATAGCGTGTTTCGGCACCGGTTCTCTGTGGAGCCGAGGCGATAGCCCCTTGACGGAAGGCTAGTCAATTTGACTTGTAGAGGGTGGTTGAGTGACAGAGAGTTTTATGCCTCGGGTGGCTAAATCAACCGAGGTAGTATCACTTTTAGTCACCAGTTCTCCAACAACCAAAGCATATAAGTTCCCGTTAATTACAAAAAAGCCACCGCATTTTAATATGCTTCGGTTTTTGAAAAACCGAAGCATATTGGACGCCTTTAAAAATTGTTTTTTTACTAGTGACAATAAAAGTTTAAGATCAAGCCAAAATGGTGTTTTGATCTTTGATCACGCACCAAACAACTATGATTGTTTGAAAAACTTTGAAAAGTTTATAATTGAAGAAAAAGTAGAAGATTCTTGTTGCTACATATGTCTTGAGGAATTTGCAATTGGATTAAGAGCAATTTGCATACCTCACCCATGTTCTCATATCTTTCATCACCATTGCATCACAAAATGGCTCGACATCAATCACACTAGTTTTTTTTTTTTTGTATAGTTTTTCAATCTACAATATTTGTATTTAGGTTTTGCATTATCAATTTCTAATATTTTATAAGTTCTAATATCTATTGATCTCACTACTTTAAAAAACAATCAACAATGACATTGTGCTACTCTTTTAGTATATTATAATGCAAATCTTAGTGAGGAGTCCACATTAATTCTATTAGATTTATGCTCATTTCTAATATTTTCTCCATTATTTATTTCAATACATTCCGGAAGTTGATTTCTGAAAAAGTTAACATGATCAAAAGTTTACATATTTTCTGATATTTTATGCAAAAGTAGAAAGTAAAAAACAAAAAAAAATAATGCAAATCTTGGTGAGGAGTCAACATTAATTCTATTAGATTTATGCCCATTTCTAATATTTTCACCATTATTTATTTCAATACATTCGAGAAGTTGATTTATGAAAAAGTTAATATGATCAAAAGTTTACATAATTTCTGATATTTTTGTGTGCAAGTGTAGAAAGTAGAAAACAAAAAAAAAAATTAGCTATAGTATAAATGGATTGTTCTTAACTATCTTATAATAACCTATCATTTGCAAAAATAATATTTTCACAACCATTCAAGAAGATTTTATGAAACGTTCGATTAAGAAATACAAAATTTATAATCTTTTTTTTTTTAAAATGTTTTGTTGGAAAATCATTTTAGAACCTTTTAGATTTCAGAAAGAAAAAAAATGGATTATGGAAAGAACTGTTCAAAAAAAATTATAAATATTTTGTTGGTTTTGAACTTCCTATTTATTGGTCGAACATTCTGAAATGTATTTATAATTTATTTATTTATAACAAACAAATATTATGGAATGATGAATTAGAAGATCAATTCTAAAATATATATAATTTGGAAACATTATTTGAATTTTTCATTTATAAATATACTTTTCTATAATATTTCTAGATTCTGCTATCATAGATCTTTCAGTACTTTCTGAAAAAAAAAAGTTATTTTGAAAAATAAAATTTTTAAAATATGAATTTCAACCTGTATAACAAAGGAGTGGCACAAAAGAACAAAACATTTTCATAAAAAATTGAGAAACATAATGTATATATCAAAATTTACATTAAGTATCAACTGATAAAATAAGTTTATGTTTACATACAATAAATAATACTATTTTTTAAATTGCATTCTTCTCGTTTTAGAAAATTCAAATCTGTACAAAAATTACTTATAATTATTTTTATCACAAGAATATTAGTGTGAAGCATTTTACACTTTTCTTTTAAAATCTAGAATCTTGTAAAAAAAATAACATGATTCAATCTACTTATAAATTATTATTTAACTAATTATTATGAATTATGGAAATTATTTTGTCTGATTATGTTGAACATGCATGCTCTTCTGATTTCAAGAGAGATGAATGGTAAAATACGACATCATGATCGGTCGTTTTACTGCAACTAAACGAAAAGTATGCATGTCGTTTTGCCTTTCCTTTCTTTTGAGAAGGTGTAGTTTCTTAATAGAACACCTCCCAAGGTGTGTGAGCAAATATTGAAGATAAGAATCAGTGACACAGAAAAAACGAACACGAACGGGTAAAATCCCTAATCCTTCTTTCATTCCTCATATTACCTCTTGTAAGTCATTTCCATCAACTGAAGCTTTTCTTTTCCAACTCTGGGCTCAAATTTTTGTTTTATTATTTTTTCCCCTTTGAAATTTTTCATCTTTATTGTAAAATTAACATGGGTTTTGGTCTTGGGTCCTGTTGCTATTCACTTTTTCTGATTTTCGATTTTGTAAAAAAGAAATTTTAGGGTTTTTACCCAGTTGTGGTAATTGTAGTCTCTGCATGCTTTCATTCAATACTATTGAGCTTCTGCTGGCATGCAATTACATCGTATGAGTATGCATCAATTCTTTGTCACGTGACAGATGCCAGAAGCCAAGTCACGTCATGATGTTGGACTGTCTCTGCTCTGAATAGAAATTATAGTTTTTGGACTGTAAACTATAGTTGCGTTCAATCCAACAATTAATATCAGTTCTCATTGTTCTATTCACAATATTTGGACTTTTTCATGGAAAAATCAGTCTAAACATGTCATGGCTTAAAAACTGGTTTCAGAGTGATTGATAGGTTAAAGACTGATTTTGGATGTAACCTGGTCCAAAACCAGTTTTATCTGCTAATTGAATCATATTATTGGCTTGCATTGGTTTAATTAGTAATTCGTAAGTTGGGTTACTTGGCCAGAGCAACACAAGTTTTATGTTGAAATGAAGGGGAATGAGCTTGCAGTTATTGCAGTTAATTAAATACCTTAATCTTAAATGTGTTACCATAAAATTGTTTAGTAACGAATTTTTGAAATGACAATAATCACCCCTTTGCAGTAATTGAAATGCATGCTTTTGACAGTTTTGGTTTTTTATTCTCCAAAGCTGAAATCAATGATCTAAGTACTGATTAATTTTTTTCTGCCTTTTGGAACATATTATCTACTGCCAAAGGCTTGAAGTTGAACCAATGGATTGTTCAGCTGCAAGAAAGACTCAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAGCAGTTTGTAGAACTGGGTAACGTTTTAGGTAAATCAAGTTTCACCTTTTCACATTGGAAATTTAATTGATACTAGCATTTCTGTAGTACTGGTAAGGGAATTAACAAAAAGAAGTTCGGATTACAATTGAAAATTACTGAATAATATGGATGTTAAAAATGAGTGAAACAGTATTAGAAAAGCAGTATTTCCTCTGTCCGATGGCTACAAACTTCCTGAACCTGCCTGATACTACTGTATACCCTCTTCGTACCTTTAATTTTCACCTTCCTTTTCTGGTTCCAGCACCAACCTATCCGATGAAAAATAATAAAAAAGCGAGTATACTATTGAAAATGTTATATTTATTCTCTGCCTTTTATATTACTTAAAACCATTTTGGTTCTTTATCCTCCACCCCTTTTCTCCCCTACACCTGCGTGCCTATAGAAAGTAAGCTGTGTGAAGCTTAAAATTTCATGTTTTAGATTGATTTATTATTTGCATTGTGAACTATTTTGCAGAGCAGTCATGCAGTATTTGTTTTAGAACTATTACAGCAAAATTAGGTCTTTTGATTTTAGACTAAGGGCAATTGATGTTTTTGAATTATCATAACATTTTGAATGGATTGTTCTGGTTTTCCTTTCCTTGACTGGTGTCTTTATGTGTCCTTAAAGTACTTTAATACTGCAGTTGTCAGGTTTTCTTTTGAAAAAGGGATTTTTCCTTTTATTTTCGTATTTGTATGATTTAATTTAGTTTTTTTAATTAACCTGATTATAGTTTTGATTATTTTAAACCACTTGTAGCATGCAGCAGATGTTAACAAGAGGATTTACAAATGCTGATATTTTGTATCAAATACCTGTTATTTCTTTGGAATGTATTCATGTGTTTTCCATTTAATGTTAAAAGCTGATAAAACAATAAATCTCTTAAATCACTCTCTGCTGTGGAGATTCTGAAATGCAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAAGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTGGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGGTAATCTGTTTATTTGATAAATTGCCTGTCTTGATACTTTTGGGACTAATGAAAATAATTAAGATATCATTCCATTTTTAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATTGACAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATATTTCCATGGACTGCAATGGATCATTCAGTTGTCATGGCTCCACCATCATATCCCTTTCCAATGCCAGTGGCAGTACCTCCTGGTTCAATCCCCATGCAGCCATTCCCCTACTTTACTAATCAACATCCTGCAGTCATCTCTAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACCCAGTACGTTTCACCTCCACTTCATCCAGGCTGTCGGTCCAATGTGTCTGAAAAACCAGAGTCCAAAAGCAAATCATCCAGGGAGAGCAAGGCTGAAAAGAACGAGGATTCTAATGATGTCACTACAGACCTTCAGTTGAAGACTCCTGGGTCTTCTGCAGATCAGGTTAGTGTTGTTTGCTAAGGAAACTTTGCAACTGATAAATAGCTGTGATCATGGTTCTAAATTGCAGTTGCAAATCCAATCCGGGAGGCATTGCAATAGCAATGCTGCAGACAGCAATTTATCATCGGATTCAGGTTTTGTTTGTGTACATGTTTTGCAGGATTTATCATCCGGACAAAGGAAATCTGGGAAGTTGTCAAGAAGGGAAAGCAGCTGCTGCTCGGAAGGGAATACATTAGGTAGGTGTTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTGCAGTTGCAAGCAGAAAGGATAATGAATGA

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