Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18543 LG4 59381641 59383395 PREDICTED: rubber cis-polyprenyltransferase HRT2-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09109 Metabolism of terpenoids and polyketides   C 00900 Terpenoid backbone biosynthesis [PATH:ko00900]
SNP Position Effect Amino acid change
G/T 59381645 missense_variant p.Asn358Lys
C/A 59381668 missense_variant p.Ala351Ser
G/T 59381841 intron_variant
C/G 59381879 intron_variant
T/A 59381888 intron_variant
C/T 59381894 intron_variant
A/C 59381903 intron_variant
C/A 59381949 intron_variant
T/A 59381966 intron_variant
A/T 59381995 intron_variant
C/T 59382001 intron_variant
A/C 59382002 intron_variant
T/C 59382010 intron_variant
T/C,* 59382029 intron_variant
T/G,* 59382031 intron_variant
C/G 59382080 intron_variant
C/A 59382112 intron_variant
G/T 59382134 intron_variant
T/A 59382157 intron_variant
C/A 59382173 intron_variant
G/A,* 59382200 intron_variant
T/C,* 59382208 intron_variant
G/A,* 59382211 intron_variant
C/T 59382241 intron_variant
T/C 59382251 intron_variant
C/G 59382258 intron_variant
T/A 59382286 intron_variant
A/G 59382409 intron_variant
A/G 59382424 intron_variant
T/A 59382436 intron_variant
A/C 59382472 synonymous_variant p.Ala308Ala
T/A 59382559 synonymous_variant p.Leu279Leu
A/G 59382560 missense_variant p.Leu279Pro
C/G 59382609 missense_variant p.Gly263Arg
G/T 59382635 missense_variant p.Thr254Asn
G/C 59382640 missense_variant p.Asn252Lys
G/C 59382651 missense_variant p.His249Asp
C/T 59382655 synonymous_variant p.Glu247Glu
T/G 59382668 missense_variant p.Glu243Ala
A/G 59382691 synonymous_variant p.Ala235Ala
T/G 59382708 missense_variant p.Thr230Pro
A/G 59382744 missense_variant p.Cys218Arg
A/G 59382772 synonymous_variant p.Asn208Asn
T/C 59382821 missense_variant p.Lys192Arg
G/C 59382873 missense_variant p.Gln175Glu
T/A 59382986 missense_variant p.Glu137Val
C/A 59382987 stop_gained p.Glu137*
T/A 59383041 missense_variant p.Ile119Phe
C/T 59383046 missense_variant p.Ser117Asn
T/A 59383067 missense_variant p.Glu110Val
T/A 59383157 missense_variant p.Tyr80Phe
T/G 59383213 synonymous_variant p.Ala61Ala
C/T 59383320 missense_variant p.Ala26Thr
T/A 59383324 synonymous_variant p.Ile24Ile
A/T 59383359 missense_variant p.Phe13Ile
G/C 59383366 synonymous_variant p.Gly10Gly
T/C 59383391 missense_variant p.Gln2Arg
G/A 59383392 stop_gained p.Gln2*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18543.1
MQKTTGNIVGQFFGGLHCYLRRCIFAILSVGPVPSHIAFIMDGNRRYAKKKNMEEGDGHKAGFEVLTSILRYCYELGVKYVTVYAFSIDNFKRKSKEVKSLMELMRKKIEELLEQESLINEYGVRLHFIGDMQLLTEPVRAAAERATRVTAHNNQRVLLICVAYTSRHEIVHAVQECSKEKFNEIQALKEEKVTNGAFSRIDQGLKGNDFGLLSQDSCKEYRNAIKACSTEVESAARNDGLYENNIENHIDNDTEAETTLYNGLVELTKERKDIQDEVLFIKLADIEKNMYMAVAPDPDILIRSSGEARLSHMYVKSDVYEFGVVLLEMLIGVRALDTMSREKKNLEDWTKPCHSFKET*


CDS Sequence:
>Vu_18543.1
ATGCAGAAAACTACTGGAAATATTGTAGGCCAATTCTTCGGTGGTTTACATTGTTATCTAAGAAGATGCATATTTGCCATTTTATCTGTGGGTCCTGTACCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAAAAACATGGAAGAAGGTGATGGCCACAAGGCAGGATTTGAGGTTCTCACGTCCATCCTTAGATACTGTTATGAATTAGGAGTGAAGTATGTAACTGTCTATGCATTCAGCATTGATAACTTTAAAAGGAAGTCCAAAGAAGTTAAATCCTTGATGGAATTGATGCGGAAAAAGATTGAGGAGTTGCTTGAACAAGAAAGTCTCATTAATGAATATGGTGTTAGATTACATTTCATTGGAGACATGCAACTATTGACAGAGCCTGTAAGAGCTGCTGCGGAAAGGGCAACGAGAGTTACTGCCCACAACAACCAGAGAGTTCTTTTGATTTGTGTAGCGTATACTTCTCGTCACGAGATTGTGCATGCTGTTCAAGAATGTAGCAAGGAAAAATTTAATGAAATTCAAGCGTTAAAAGAAGAGAAAGTTACAAATGGTGCGTTTTCAAGAATTGATCAGGGCCTGAAAGGAAATGATTTTGGTTTGCTTTCTCAAGATTCATGTAAAGAATATCGAAATGCAATAAAAGCTTGTAGTACTGAAGTAGAAAGTGCTGCAAGGAATGATGGTTTGTATGAGAATAATATCGAGAATCATATAGATAACGACACTGAAGCTGAAACGACATTATACAATGGGCTGGTTGAATTGACTAAGGAGAGAAAGGATATACAGGATGAGGTTCTATTTATAAAACTGGCGGATATTGAGAAGAACATGTACATGGCAGTTGCTCCTGACCCAGACATCTTGATCCGATCTTCTGGAGAAGCTCGCCTCAGCCACATGTATGTGAAGAGCGATGTGTACGAGTTTGGTGTAGTGCTTCTTGAAATGCTGATAGGCGTGAGGGCACTTGACACAATGTCCAGAGAGAAGAAGAACCTTGAAGATTGGACTAAGCCTTGTCATTCTTTTAAAGAAACATAA


Promoter Sequence:
>Vu_18543::LG4:59383395-59385395(-)
ATTATAATTGTTATGTTTAATCTGATCATAAATTATTCAATTATTTTAACTATTGATATATCTTTTACAATTATTCATCAGTACATCATGCAACCTTCCAGTACACCACCGTGGACAGCCTCTTGCACTTCCCTAACATCCCATCCATTTAACCATTGAAACTTAAGGAGTTACGTTAGAAGATTGAAATTTGAAACTTTGTTTCCTTTTCCTTTTGACAAAAATGTGAAATTGAATGGTGCTGAGGTTCCATTGCGGTCCATTGTAGTAATGTTATGAATGCATTATATATCATTTTGTGGACTGTTGACTTTGTAGGATGCTCCACAACTGTAATGTTGTGCTCACAATTGCGGTCGCAGACTGCAATTTAAAAACATGCATATATCCATTAAAACAGAAACGCTTTCACACTCCTATATCTGCCAACTAAAGTGCCTCTTGCACTTCCCCAACATCCCATCCATTTAACCATTGAAACTTAAGGAGTTACATTAGAAGATTGAAATTTGAATCTTTGTTTCCTTTTTCTTTTGACAAAAATGTGAAATTGAATGGTGCTGAGGTTCCATTGTAGTTATGTTATGAATGCATTATTTTGTGGACTGTTGCCTTTGTAAGATGCTCCACAACAGTAATGTTGTGCTCACAATTGCGGTTGCAGACTGCAATTTAAAATCATGCTTATATCCTTTAGAACAGAAACACTTTCACACTCCTTTATCTGCCAACTAAACTATTAGTTACACAGGGCATAACCTTCAATTTTCTGTCTTGGTCATGACCTCCTACATTGTGACCCATCATATGTCTTCTTATCTACCCAAGCTACTTTAGGTATCCTATCATCGATGCTCTTCCCCTCAAGACACACAATGTCATTGGATGTCATGTAACTGGTCGTCAAGGGTGTAAACATAATCTCTAAGGAAACTGATCCTTAACTTTTCCACCAAAGTTTTTCTTACTTTATCTTTTGGTCTCTCAAATGTTTATTGTCAAGGGGCATTTTATTTTTCTGTTGACTTAAATTTTGGAATTTTGGAGATGATCTAAACCTTGAACATGTTTCATATTTGATGATCGTTCTCTGTCTTCCATTCCATCTGTTGCTGCATTTCAGGTAAAGCATAGTAGGAGATTGGGTACTGATTTTAATCTTATTTTTGCAAAGGGTGTGCCTTTTTCCTATGTTATTATGATTATTGTTTGGGAAAATGGCTATGATAGGAAAGTTATATCCTAAATTGATTATATCTAGAATGAATGAGAGTCGATTATTTATGCGCTATTAAGTGAGCTTTAGGTAGTTGTAGTTCAGAAATTGTGCATTTGAACTTTGCATTCCACACTAATTTTAGATTTGCTTTTCATTTAGACTCAGCCTTATCAGCTTTCGACAAAACTGCCACTTGTTCCCCATAATTGATTTGTGATCAGATACAACTGTTTCAACATTACAGAGTTTTTGAATATTGATTGTTTACAAATATATATATATATATATATATATATATATATATATATATATATATATATTCTTCTGTTGATATAGTTTAAATTGTATTTTCGTTTTGATATTATTGATGGTAAAATTTTATCCTTTTAAACATTGTTTAAAATCCTAGATTTTGTTCTAGCTTCCTTGCTGCAACAAATTTACAGGAGTCCCAGCTCTTATATTTCCATCAACTTTTAGAGTAGTGATACTCAAATCGTAAACTGAATATGATATCATTTGTTGTCCGGAAAGTTGGGTTTAATACATGAGCAGTTATGGTGAGGCACCCATTTTATTTGGTGTCAAAACTATCCCATTTATATTTATAACATTGAGTCTGTTTTTACAATTCACAATGTAGTTATACTTTCTTCTTACTAGTAGACCTGTACATTGATGTTTGACTGTTGTTGCTTTAATTCTTATCTCTACCTTATAATTAAATTCTTTTCAAACAGGTTTATCTTGGACTATTCAAGTTTCACAACTGAACGGTTCA


Gene Sequence:
>Vu_18543(-)
ATGCAGAAAACTACTGGAAATATTGTAGGCCAATTCTTCGGTGGTTTACATTGTTATCTAAGAAGATGCATATTTGCCATTTTATCTGTGGGTCCTGTACCAAGTCATATTGCTTTCATCATGGATGGGAATCGAAGGTATGCAAAGAAGAAAAACATGGAAGAAGGTGATGGCCACAAGGCAGGATTTGAGGTTCTCACGTCCATCCTTAGATACTGTTATGAATTAGGAGTGAAGTATGTAACTGTCTATGCATTCAGCATTGATAACTTTAAAAGGAAGTCCAAAGAAGTTAAATCCTTGATGGAATTGATGCGGAAAAAGATTGAGGAGTTGCTTGAACAAGAAAGTCTCATTAATGAATATGGTGTTAGATTACATTTCATTGGAGACATGCAACTATTGACAGAGCCTGTAAGAGCTGCTGCGGAAAGGGCAACGAGAGTTACTGCCCACAACAACCAGAGAGTTCTTTTGATTTGTGTAGCGTATACTTCTCGTCACGAGATTGTGCATGCTGTTCAAGAATGTAGCAAGGAAAAATTTAATGAAATTCAAGCGTTAAAAGAAGAGAAAGTTACAAATGGTGCGTTTTCAAGAATTGATCAGGGCCTGAAAGGAAATGATTTTGGTTTGCTTTCTCAAGATTCATGTAAAGAATATCGAAATGCAATAAAAGCTTGTAGTACTGAAGTAGAAAGTGCTGCAAGGAATGATGGTTTGTATGAGAATAATATCGAGAATCATATAGATAACGACACTGAAGCTGAAACGACATTATACAATGGGCTGGTTGAATTGACTAAGGAGAGAAAGGATATACAGGATGAGGTTCTATTTATAAAACTGGCGGATATTGAGAAGAACATGTACATGGCAGTTGCTCCTGACCCAGACATCTTGATCCGATCTTCTGGAGAAGCTCGCCTCAGTAATTTTCTACTTTGGCAGACTACTACATGCCCTTTATATGCACCAACTGCACTTTGGCCTGAAATTGGTCTCAGACACTTGATCTGGGCAGTATTGAACTTTCAGAGACACTACTTTTATTTGGAAAAGAAAAAGAAACAGTCTTAAGTGTATTCTTACCGGCCAAAATACATAATATGTGGCAACAGGTAAATTATATCTGCAGACAATTAGCAATTAGAGCAGCTTTAAATGTATGGTTTTTTACTGCACAGAATATCAACGTAGATTATTTACATGCTTTTGCTATGTAATAAGAAAATGGAAGCAAAATATTGTAAAAAATTAACAATTTCGTATTATTTTCAGATGTTTTTTTCGTTTATATCTCCTACTTTAACATGTAATTTCTAAAATATCACTTCATTTCTTGGATTCAGAGATTTATAAAAAAAACAAAACAAAAAAACAGAAGAAAGCATGAATAGTGTTGTCTTCAGTATTTCTGAGATGAACAAACATTTTTTTTGTAATGTTTGAACAAAACAAGAAATCAAAACAAGGTCTCCTTAAACAGTTATGCACTGTGGAAGTTAAACTTGTGGCAGGAAGTCTAAAAGTAGAAATCTAGTATGTATAATTCTTTGACCTGCCACAAACTAATTTCCTCTGAACTGTATATATATTTGAACAGGCCACATGTATGTGAAGAGCGATGTGTACGAGTTTGGTGTAGTGCTTCTTGAAATGCTGATAGGCGTGAGGGCACTTGACACAATGTCCAGAGAGAAGAAGAACCTTGAAGATTGGACTAAGCCTTGTCATTCTTTTAAAGAAACATAA