Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_18369	LG4	53263976	53265745	probable LRR receptor-like serine/threonine-protein kinase At1g34110	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	53264200	missense_variant	p.Phe516Leu
A/T	53264232	missense_variant	p.Leu505His
T/C	53264246	synonymous_variant	p.Glu500Glu
A/G	53264619	missense_variant	p.Leu376Ser
G/T	53264629	missense_variant	p.Gln373Lys
C/G	53264633	synonymous_variant	p.Val371Val
C/A	53264636	missense_variant	p.Gln370His
G/A	53264638	stop_gained	p.Gln370*
T/C	53264700	missense_variant	p.Asn349Ser
G/A	53264745	missense_variant	p.Ser334Leu
G/C	53264840	synonymous_variant	p.Gly302Gly
G/C	53264877	missense_variant	p.Thr290Arg
G/A	53264898	missense_variant	p.Thr283Met
T/C	53264956	missense_variant	p.Ile264Val
G/C	53264970	missense_variant	p.Thr259Ser
T/C	53264971	missense_variant	p.Thr259Ala
T/A	53265031	missense_variant	p.Thr239Ser
A/G	53265033	missense_variant	p.Phe238Ser
G/C	53265035	missense_variant	p.Asn237Lys
T/G	53265037	missense_variant	p.Asn237His
G/A	53265113	synonymous_variant	p.Thr211Thr
T/G	53265124	missense_variant	p.Ile208Leu
C/G	53265125	missense_variant	p.Leu207Phe
T/C	53265187	missense_variant	p.Asn187Asp
A/T	53265245	missense_variant	p.Asp167Glu
G/A	53265265	missense_variant	p.Leu161Phe
G/A	53265464	synonymous_variant	p.Asn94Asn
G/A	53265530	synonymous_variant	p.Ile72Ile
T/C	53265655	missense_variant	p.Asn31Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_18369.1

MNSLSKNLTGRIPWTGSDPCAWKGVSCDLANSSVVGISLSGFSLNSSDFLPLVCKIETLEILDVSNNHLSSIHDGFITECGKIKGLKLLNFSNNNLGVLPTFHGFDALESLDMSFNAMRGNIVLEIDELVSLKILNLSFNGFSGSLPTKLGKSMVLEHLLLSSNSFDGKIPDELLSYENLTWIDLKNNGLSHSIPTNIGKLSKLETLILSTNDLTGEIPTSLANITKLSRFAANQNNFTGSIPSGITKYLTSLDLSYNTLSGAIPEDFLSPQQLQVVDLTNNTLNGSLPTKVSPNLFRLRFGSNQLSGNIPSDAFVELHNLTYLELDNNILMGSIPAELSSCKSLTLLNLAQNRLSGVLPQQLGSLTNLQVLQLQLNNLNGTIPTQIGQLYKLLTMNLSRNSLSGPIPSDIANLTILNFLYLQGNNLNGSIPTSIGYLRRLLELQLGENHLRGEIPSMPVYPLVSLNLSSNLFSGSIPRSLGSLDSLEVLDLSNNRFSGEIPVELTTMPALTRLIFSNNNLLSGEIPRFSPLVDVEHNGTNLEDNTAQDNPTTKTGSKNGIGVGVAILIGSVAATFLGGFATVGCLKFI*

CDS Sequence:
>Vu_18369.1

ATGAACAGTCTCTCAAAGAATCTTACTGGTAGGATTCCATGGACTGGCTCTGACCCATGTGCATGGAAGGGAGTGAGTTGTGACCTTGCCAACTCCTCTGTAGTAGGGATTTCTTTATCTGGTTTTTCACTCAATTCTTCTGACTTTCTGCCCCTTGTTTGCAAAATTGAAACTTTAGAGATTCTTGATGTCTCCAATAACCATCTGAGCTCAATCCATGATGGTTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAGCTGTTGAATTTCAGTAATAACAATTTAGGTGTTTTACCTACTTTTCATGGCTTTGATGCATTAGAATCTCTGGATATGTCTTTCAATGCGATGAGAGGGAATATTGTTTTAGAGATAGATGAGTTGGTTAGCCTAAAAATTTTGAATCTTAGTTTCAATGGATTCTCTGGGTCTCTTCCTACCAAATTGGGAAAGTCCATGGTTTTGGAGCACCTTCTGCTTTCTAGCAATAGCTTTGATGGCAAAATCCCTGATGAATTATTGAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATGGACTTTCACACTCTATTCCTACCAATATTGGGAAGCTTTCTAAATTAGAAACTTTGATCCTTTCCACCAATGACCTCACTGGTGAAATTCCAACTTCACTGGCGAACATCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAACTTCACAGGTTCTATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGTTATAATACTCTGTCTGGCGCCATTCCAGAAGACTTTTTATCTCCACAACAGTTGCAGGTTGTAGATTTGACCAATAATACGTTAAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGCAGCAATCAGCTGAGTGGAAACATTCCTTCAGATGCTTTTGTAGAACTTCATAATTTGACATACTTGGAGCTTGATAACAATATCTTGATGGGATCGATACCAGCTGAATTGAGTTCTTGCAAGAGTTTGACATTGTTGAATTTAGCTCAGAATCGGTTGAGTGGTGTATTGCCACAACAGCTTGGTAGTCTTACCAATCTCCAGGTGTTGCAGCTCCAATTGAACAATCTTAACGGCACAATCCCAACTCAAATTGGCCAACTTTATAAATTGTTAACTATGAATTTGAGCCGGAATTCTCTGAGTGGACCAATTCCGTCTGATATTGCAAATTTAACCATTCTTAATTTCCTGTATTTGCAAGGCAACAATCTTAATGGTTCCATACCGACATCCATTGGGTACTTGAGGCGTCTTTTAGAACTCCAACTTGGGGAAAACCATCTAAGAGGTGAGATTCCAAGCATGCCAGTGTATCCGCTGGTTTCATTGAATCTTAGTAGCAACCTCTTTAGTGGTTCTATTCCTAGAAGCTTGGGTAGTTTGGATAGCCTAGAAGTACTGGATCTCTCAAATAACCGTTTTTCTGGTGAAATTCCTGTTGAGCTTACTACAATGCCGGCTTTGACACGGTTGATATTTTCTAACAACAATCTTCTGTCTGGTGAAATCCCAAGATTCAGTCCGCTTGTTGATGTTGAACATAATGGAACTAACCTAGAAGATAATACTGCACAGGACAACCCAACTACCAAGACAGGGTCCAAGAATGGAATAGGCGTTGGAGTAGCCATTCTCATTGGAAGTGTAGCAGCTACTTTTCTTGGTGGCTTTGCCACTGTTGGTTGTCTTAAATTTATATAA

Promoter Sequence:
>Vu_18369::LG4:53265745-53267745(-)

TAAGACAAAAATTATAAAATAAAAACTCATTATAAAATCATTTTTTGTAAGAAATTGTTTAACAACAAGTATTTCTGATTTTTTCCAAGTCAATTACCAATTCATTTATGCTTGTGAAAATTGGATAAAATTAGATAAGACAAAAATTATAAGATGAAAACTCATTATAAAATCATTTTTTGTAAGATTGTTTAAAGGCAAGTGTTTCTGATTTTTTCAATTAGAACTACAGTAGAGATGACAGAGAAAAGATTGGAGTGAAAAAATAAAAGAGAAATGGTTGAGAGGAATGAGAGAGGTGACTAAGGGTTTGAGGTTTTTTTAGTTGTGAGAATGAAAATTATTAAAATATCCTTAACTTTAAAACTTAGAATCCATGGTATATAAGGATATTTTTGTCTACTAAAATCCGGTACACATTGCTAAAATGTACCAACTGAAAAACAGGCATACGCGCGTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAAGATATTTTGTTGTTTAAATAAGTTTTGATATGTTAAATATAAATAATAAATATAAAGTTTATGAGTCTCTACCTCATATCCATAATCTCTGTTGACAGTGGTGATGACGAATCTTGGCTTAATCTTATATCTAGTATTATTACAAAAAAGAAAATATTTAGTGGAAGTTTATTTTTTAATTTGCGAATATTTTTATCCTCTGGAAATTAATTTGCGGAAGTTTTTAATGACTCGAACATCTCTTGACTTTCTACCAAACTAGAATTAGTTCTTGTTCCTTACTATAACTTTATTTCTCACATAATAACTTAACTATAACAATAAAACTCTAAATTAGAATTTAAACACAAGTTCATATTTATAAACCAATAAAGATTCACTTTAAGTATAATTAAGTTGCATGTGTTGAGTAACCCCTCCCATGCAATTTGAAAAGCTAAATTAACCTCAAAAAAGATAAAAGGTAAACTTACTTTATTTTTAAATAGATATGTATAGTTTTTCATTATGAGCAATGTATGATTTTTTTTTTTATGTTGGAAATCTATAAAGAAAATAGAAAAGAAAGTTTAGAAAGAAATATAAAGATTGTGGTTTTTATAAAAATAAATTTTTGCTAATAGAAAAATATTTTTATAGTTTTAATCTTTTATTAAAAATATCATAATGTCATCTTTTAAAAACCACCAATACTATTCTAGATTTTTACAATTATTTTACTTTTATCTATCATACACAATGCAATAAAAATCAAACGTATTACTTAAGTTAAGTGTTAAAATATCTTACATACATTTTTTTTCCAGCATCTTTGCATACAGTTATCTCATTCCATCCTTACTAAAAAAATGCGAAGAAGAAATAATAAAGAAATAAAACAATAAAAAATTAAAAAGAATATATGTGAGTGAGTCTTATAAAGACACATTGGATATTTGTATAAATAACACAACATTATTATTAGGAGAAGAATTTAAAATTTCAATTTCAATTATTGTCCTATCTTCAAAAGTATTGTTTTTCTTCCTTAAAGTTTATTTATTTGATTTTTGCTTTTTCATAATTTAATCAATTTAATGACATGATAAATATTATGATAAAGAATATGGTTGAGTTTAACTTAAACAGAAGAGAAAAAAGTGGATTTAAAATATTAAAAATTTTATACTAATCCTATTAGATTTGATAGGATTTAGCTAAATATAGCACATAAAATTCTTCCAACATTCTCTTCGTCTTCTTCTTCCATTCTTCGTAATGTTTCTCTTCACCCTCAATCCAAAGCAAATAAAATTCTTATTCACACACCCCAGATAGATATACACACGTATAAAGGATAATCACACTTCAAAACTCACTGCTAAGAACATGGGCAGGTATTACCACCCTTCTTCATCTTTCCTTAGTGTTGTTTACTTCCTCTTTTCTGTCTCTCCCATGGTCTTCTCCCTGCTATCACAAACCCAAACAGAAACC

Gene Sequence:

>Vu_18369(-)