Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_18356	LG4	52977674	52979065	PREDICTED: scarecrow-like protein 21	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	52977685	synonymous_variant	p.Ser4Ser
A/T	52977694	missense_variant	p.Glu7Asp
G/A	52977733	synonymous_variant	p.Gly20Gly
C/G	52977755	missense_variant	p.Pro28Ala
G/T	52977832	synonymous_variant	p.Leu53Leu
T/C	52978093	synonymous_variant	p.Tyr140Tyr
G/T	52978108	missense_variant	p.Glu145Asp
A/T	52978117	synonymous_variant	p.Thr148Thr
T/C	52978171	synonymous_variant	p.Tyr166Tyr
G/T	52978210	missense_variant	p.Glu179Asp
A/T	52978312	synonymous_variant	p.Ser213Ser
T/A	52978344	missense_variant	p.Leu224His
T/C	52978360	synonymous_variant	p.Phe229Phe
C/A	52978414	synonymous_variant	p.Ser247Ser
A/G	52978478	missense_variant	p.Ile269Val
G/T	52978488	missense_variant	p.Arg272Met
G/T	52978615	synonymous_variant	p.Val314Val
G/A	52978651	synonymous_variant	p.Leu326Leu
C/A	52978771	synonymous_variant	p.Ile366Ile
A/T	52978801	synonymous_variant	p.Gly376Gly
G/A	52978816	synonymous_variant	p.Lys381Lys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_18356.1

MEGSEEEELLNLTLSVDAGGKRRKKGRPRDDDTNSLVIPMKSSEGYEGKIFRLLQMRELMLREDHRRKGVVEDGNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKSLHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFSNHLVFEFQGLLRGSSRLINLRRKKNETLAVNLVSYLNTLSSFMKVSDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMENHEFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGSGGFRVSERDEGRVISLGWQNRFLLTVSAWQPI*

CDS Sequence:
>Vu_18356.1

ATGGAAGGTTCAGAGGAAGAAGAGCTTCTAAATCTTACTCTTTCGGTTGATGCAGGTGGGAAAAGGAGAAAGAAAGGAAGGCCAAGGGATGATGATACTAATTCTCTTGTTATTCCTATGAAGTCCAGTGAAGGGTATGAAGGGAAGATCTTTAGGCTGCTACAAATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGATGGGAATAATGGTCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCTATTGATGAGAGAAACTACTGTGCAACTCTTGAGAATCTGATTGAGTTGTATCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTGGCCTACTTTGCTGACGGTTTGGCTGCAAGGCTTCTCACAAGAAAGTCTCCTTTCTATGACATGGTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTATCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAATCACTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCAGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTTGGGAACAACCTGAAAGAACTGCAAGAAACTGAGGCCAGATTAGTTAGCTTCTCCAAAGGGTTTAGTAACCACCTAGTGTTTGAGTTCCAAGGGCTTCTAAGAGGCTCATCAAGGCTCATCAACCTGAGGAGAAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTAAACACTTTGAGTAGTTTCATGAAGGTCTCGGACACATTAGGCCTAGTTCATTCTCTTGGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCCTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGAGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAACAAGAATGGAGAATCATGAGTTTGTGGGAAGAAAAATTAGCTCAAAGTGTGTGATCCAGGCGAAGCTGCTTCTGAAGATGAGGACCCATTATTATCCTCTACAGTTTGAGGAAGAGGGTGGAAGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAAGAGTTATCTCTTTGGGATGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA

Promoter Sequence:
>Vu_18356::LG4:52975674-52977674(+)

TATAATAGTTTTTAATAAGCTAATGTATTCACAGTACTGTTGAATTGAAGGAATTTCTTTTAAATGATGTGTTTTGTTTTACTTTTACTTACTTAAGTTATTAATGAACAGAAGTTCTCTGCTTGAATCAGTAAATTCTCCAGCACAATTTACTCTATTTTTTTAATAAAACATATATGCTGAAATCTTAAAAGGGATTCTAATTATATTCATATATTTCAAACATTGATTTCTTATTATTATACTTTTACACGAGTAATTGAAAAAAGAAAGAATGGAACTGTGACTACACTGTATGACAGTATTAATCAGGTAGAATTGATCAAAATATCATGTGTTTTCGTTGACAAGCTTTTGAGGGATTTATTTATATGATGGGTAGAAAATTGAATTGTATTACTTGATGTGGACAAGGCTTATATTCGCATTGGAAGATGCTTTGTGGATAATCCATTTTGTCCCTGTTTATCCCCAACACTAGAAAAATCAAATTGAATAATCAAACACAAGTCCATTCCAAAATGGAAAAAATAACAAATGAAATTTAGTTCACACAGGAGAAGTTAGGTCACCTTTTTGTTTGCATTCATTTGTCTTGGGATATGACGAGGTCTCAAAATTCTCATCGCAGAGGATCCCAATGTACTTGAGGAATATATGCTAATTAAGAAAACCCATAATCCTTTGTACGAAGCTCTAATAATGTAAATTAGAAACATTTTTAGAAGAATAGGGTATCCAAGTTTCTTCGATTGCATCAACCGATTAAAGAATATAAATAAAATAATCAAACGTTCTAATTAACCATTACTTACTATGCATGGCATTTAGTTTTGTTGTATCATTCAAATTCAGTGTATTCCCACACCTTATTCGTATCTTTGAATGATGATAAACGAATCTTAGCTTAGGTTTGAATTATATAGATTGCAACTCTATTATAACTCCTGCTAACATTTGATTTGTTTTCACAGATTAATAAATTGTTATTTTATATTGATTAAAAAACAAATTGATATATAAAAAATATTTAAAATAATTGACACTATTACAAAAATAAAATACATAGATAACCCTTTTTTTATCGCTTTAAAATTTCGGATAAAAAGAAGTTTTAATTTTACATAAATTTTAGAAACTAAATATATTTTAATATTTTTTATTTGCTATGAAATACTACTAGACTGATTATATCACACCCTAAATGGGTACGTTTTTCTTGGTAAAATGTTATCATAATTCAAGACTACTGTTGCACTAGACCTAACCTATTAATATGTTCAAATTATATGTTTGGAACATGTCAAAAACTCTTTGTATACACGTCGTTATTAACGTCCTTTATTGTAGTTTCTGCATCAAAGCCAACTTGAGACTTGTAGGAAAAATTTTTGTACTCTCTAAACCCAACCATGATTTGGGATGCACAAACAACAATATCTAAGCATGTACAACGTTAGGAAATTGAAACGAAGTTAAGAAATAAAGGAACATGATATCTTGAAGGGGATTCAAGAAAACTGGTTGGGACAATTAATAAAGAAGGAAAAAAGTGTGTAATTAAAGACAATTTCTTGAGACGGTACGTTTTGATTCCCATTGACACTGCTGTCTCATGTCTAATGCGTATGGCATCTTGCAAGCCTTCTCAACTACCAAAGGAGTAAGAATTAATCTAAAAGCCAAACATAGCATAAAATTTAAAAGCAGTCCAATAATAAAGACACATCAACGTGTTTTCCTAACCCCAAAAACACTGATTCTAGAGAATAAAAAGATACCCTTCTTAATCTCTCCGTCTTATTTGGAAACAATACACAAGAAAAATCTCTTATTATCACTTTGTCGGTCTTATTTATATATATACACACCATGTCACAAGACAAAGTTTGTGAGCTGTTTCCCAGGTAAAGCCAACAAACACAGAGAACATAGCAAACACTTTGTAATATGTTCGAGATCTATTGATCCTTCTTCTTTCACTTACAGCTTCAGATAAA

Gene Sequence:

>Vu_18356(+)