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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18285 LG4 51166854 51169364 PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 51166909 missense_variant p.Gly19Ala
T/A 51167027 synonymous_variant p.Pro58Pro
G/T 51167208 missense_variant p.Ala119Ser
T/A 51167270 missense_variant p.Phe139Leu
T/C 51167504 synonymous_variant p.Gly217Gly
C/A 51167522 synonymous_variant p.Ala223Ala
T/C 51168081 missense_variant p.Ser410Pro
T/C 51168226 missense_variant p.Val458Ala
A/T 51168541 missense_variant p.Asn563Ile
T/C 51168968 missense_variant p.Leu591Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18285.1
MFLKIQFLFLILFLAATVGTAIDPGSTLSASSSSNQTWSSPGGSFSLGFISVQPPTTPPSFIAAISYTGGDPVVWSAGHGAAVDSGGSLQFLSSGNLRLVNGSRSTVWESATAGATSAALEDNGNLVISNGTSILWTSFDNPTDTLVQSQNFSVGKVLTSESYFFSLSGIGNLTLKWNNSIEYWTQGLNSSVNVSLESPVLSLTSIGLLELSDVNLGSPVLVAYSSDYDLNANVFRVLKLDNDGNLRIYSTSLGGGTSTVRWAAVANQCEVYAYCGNYGVCGYNDSSTVCGCPSENFEMVDPNNGRKGCRRKLSLDSCQGTATMLTLDHAVVLSYPPTATSETFFIGLSACRTNCLSGSSACFASTSLSDGTGQCVLRSIDFVSGYQDPSLPSTSYFKVCPPLAPNPPPSSAGTLRERSSKVPAWVVVVVVLGTLFVLLALEGGLWMWCCRNNKRFGVLSAQYALLEYASGAPVQFSYKELQQATKGFKEKLGAGGFGAVYRGTLVNKTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRLIGFCSEGRHRLLVYEFMKNGSLDNFLFQTEHHSGKLLNWEKKFSIWAYEEFERGNISAILDKRLAGQEVDMEQVRRAIQASFWCIQEQPSQRPTMSRVLQMLEGVTEVEKPPAPKSVMEGTVSGTSTYLSSNASAFSTVGVSPPGPSSTSSFQISGVSTFNSGRTPEKATSSLLQSDT*


CDS Sequence:
>Vu_18285.1
ATGTTCCTCAAAATCCAATTTTTGTTCCTCATCCTTTTTCTGGCAGCCACCGTTGGTACCGCCATAGACCCAGGTTCCACTCTTTCAGCCTCTTCCTCCTCCAACCAAACGTGGTCTTCTCCCGGGGGCAGCTTCTCCCTGGGATTCATCTCCGTTCAGCCACCCACCACCCCTCCTTCCTTCATCGCCGCCATCTCCTACACCGGTGGCGACCCTGTTGTCTGGTCCGCTGGACACGGCGCAGCTGTGGACTCCGGCGGGTCCTTACAGTTCCTCTCCTCTGGCAACCTCCGCCTCGTCAACGGCTCCCGCTCCACCGTGTGGGAATCTGCCACGGCGGGCGCCACTTCAGCAGCCCTTGAGGACAATGGAAATTTGGTAATTTCGAACGGCACAAGCATCCTCTGGACAAGCTTTGACAACCCCACAGATACCCTGGTGCAGTCTCAGAATTTCAGTGTTGGTAAGGTTCTCACTTCCGAAAGCTACTTTTTTAGCCTTAGTGGAATTGGGAATTTGACTCTGAAGTGGAACAACAGCATAGAGTACTGGACTCAGGGTTTGAATTCTTCTGTGAATGTTAGTTTGGAGTCCCCTGTGTTGTCTTTGACATCGATTGGGCTTTTAGAACTTTCTGATGTGAACTTGGGTAGTCCTGTTCTTGTTGCCTATAGTAGTGACTATGATTTGAATGCTAATGTGTTTAGGGTGTTGAAGTTGGACAATGATGGGAATTTGAGGATTTATAGTACTAGTCTGGGTGGTGGAACTTCTACTGTTAGATGGGCTGCTGTTGCAAATCAATGTGAGGTTTATGCTTACTGTGGGAACTATGGTGTGTGCGGTTACAATGATTCCAGCACGGTATGTGGTTGCCCTTCAGAGAATTTTGAGATGGTTGATCCGAATAATGGTAGGAAAGGGTGCAGGAGGAAGTTGAGTCTGGATAGTTGCCAAGGGACAGCGACCATGTTGACCTTGGATCATGCTGTGGTGTTGAGTTATCCCCCTACAGCGACATCGGAGACTTTTTTCATTGGTTTATCAGCCTGTAGAACGAATTGTCTTTCGGGTTCAAGTGCCTGTTTTGCTTCTACTTCCTTGTCAGATGGCACAGGGCAGTGTGTACTAAGATCAATAGATTTTGTTAGTGGATATCAAGATCCTTCGTTGCCTAGCACTTCTTATTTCAAGGTTTGTCCACCGTTGGCACCAAATCCACCACCCTCTTCGGCAGGGACTCTGAGGGAAAGGAGTTCCAAGGTGCCTGCATGGGTTGTGGTTGTGGTTGTTTTGGGTACTCTTTTTGTTTTGCTAGCCTTGGAAGGGGGTTTGTGGATGTGGTGTTGTAGGAATAACAAGAGGTTTGGTGTGTTGTCAGCTCAGTATGCTCTTCTTGAGTATGCTTCTGGTGCTCCAGTGCAGTTCTCGTACAAGGAGCTCCAGCAAGCGACAAAGGGGTTCAAGGAGAAGCTCGGAGCTGGTGGATTTGGTGCTGTTTATAGAGGCACTCTTGTTAACAAAACTGTTGTTGCAGTGAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAGCAGTTTAGGATGGAAGTTGCCACTATAAGTAGCACTCATCATCTGAATTTGGTGAGGCTTATTGGCTTTTGCTCAGAAGGGCGCCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGATCTCTTGATAATTTTCTATTCCAGACAGAACATCATTCAGGAAAATTGTTGAATTGGGAGAAGAAGTTCTCCATCTGGGCTTATGAAGAGTTTGAGAGAGGTAACATCAGTGCAATTTTGGACAAAAGATTAGCTGGGCAAGAAGTTGACATGGAGCAAGTAAGAAGGGCAATTCAAGCAAGCTTTTGGTGCATCCAAGAGCAGCCATCTCAGAGACCAACAATGAGCAGAGTGCTGCAAATGCTAGAAGGAGTAACTGAGGTTGAAAAGCCACCTGCCCCAAAATCAGTGATGGAAGGAACTGTCAGTGGAACCAGCACATACCTCAGTAGCAATGCCAGTGCATTTTCCACTGTTGGAGTTTCACCCCCTGGACCCTCCTCTACATCATCATTTCAGATTAGTGGTGTTTCAACCTTCAACTCAGGAAGGACCCCTGAGAAGGCAACCTCATCTCTTTTACAATCAGACACATGA


Promoter Sequence:
>Vu_18285::LG4:51164854-51166854(+)
AGAAAACATAATTGAATTTTCTACTTTGTGGAGGGAAATATTTTATTAAAAGTAGTAAAAAAATTGGGAGGAGAGAATGCACATAAAATTAAAACAAAATTGAAAATGAAGTAATTTTTATAAAATGACATAAATTTTCTTAATTAACAGGATATTTAATATCAATTTTGGTCTCTAATTTTATTAGTTGTGAGTCCTCTCATTTTTGAGTTGTTGGAAACTCTTGGCTTCCATTTTCGGGACTTCCTTTTTCTTGAACAAACCCAGCACCGTGGGTCCTTGCTGTGCAAGGAGACACCCTCCTCCTTCCTCTCCTCTGTTTCTGGGTTGGCATTATAGGGAACCTTTCTTCTTTCCTTCTTCTTGTTGTGGTTCTCTTCATATTACGGCTCCAAATTGGGGTTTTATTTTTGGGATTCTAGTCTCGCGACGTTGGGTTTCCATCCTTGGATTGAGTTTCTATTTTTTTTTTCTCTATAGGTTGGTGGCACAATGGTTGGGATTCTTCGTGATCTTGTGATTTTGGGGATTTTAGGCTTTTCGTCTAGGATTGAGGGTTCTGATTTTGGGAATTTCTTGTGTCTTGATTCTCCTTTGTAGATTGTTAATGCGATTTGGGGGTTAGGGTTTTTGAATTGGGGTTTTGTTTTCTGATTTCACGTTTTGGGATTATCTGCAATTGTATTTTTATCTTGCACTTTTAGGGTTTTTGAATTAGGGTTTTGTTTTCTGATTTCACGTTTTGGAATTATCTGCAATTGTATTTTGATCTTGCACTTTTGGGGTTTTTGGAATATGTGATCTTGCATTTTGGGATTTTGATTTTGAAATAAAGCTTTGATGGTGAATTACTTCTAACCTAATTGTAATTTCCTTTAATCTTTTCTCGGCAATAACTTTAACTTTTAACATTTATACATCAATCGATTTGAGCTTGTCAAGTAATAAATAATTGGACAAGTCAATCACTATTAGCTAAATGAACATTACATAGTCAGTGTTTTTAACTGCAAAAAGGACCAACTTGAACCAGTTTTACAAAATATGAGACCGGTTTGAACAACTCAAAAATAGGAAAACCACTTTAAACACAACTAACAAAATTAGAGACAAAAATTAATATTAAACCTTAACAAAAACTAATATATAAAAGTAATAATTAATTAAGGGTATTTACGTCTTTTCACGACAAATTAACTTTCTTTGTCTTGCTTTCTTTTCAAAATAGAAGGGAAGTATTTTTTTAAAGAGAACTCACTATCTTATTCCCTCGTTCATGATACACTGTTTGATTTTAGTTTCACATGGACTGAATTCAAATATGATGACATGACATCAACTTGTGACATGTTATACAACTACAACTAAGATACTAAATTAAAATTATTAAAATTTGAATGATTAAATCATTTAGTATATTAAGATCCAATTGAAACAACCCAACGCCGCTATACACCCTCAATTGTATAATTGTTATATCTTACAAATTAAGTGTAATTACGTTGTTTTGAAAGCAATAAGTTAGATAATACCATAATATACCATATATTTCCTCTTTCTTTTTCTTGTTTGCATTGCAATCAAACAAAAAGGTGAGATTACTCAGCTGCAATATAAAGTGTTCATTGTTCAACATGAAAAAAGAAAATCCAAATTTTCTCCATTTTGCCACAATCTAAACCCCAAAAATGGATTAGAAGAATGAACAAAAGAACTAGAAGGTCAAGCTTTAAAACTTTTCCTCTTCCAAAACTTGAAGGAGCAGCAGCAGCCATTTCTTCCATAAAATATTCAACCCGATTGAAGATTCTAACCAACAGAAAGGGCCAAGTCAAAGTCTTCTCCTTTCACTCCCCACTACAAACCCCATTTCTTCCCCACACAAACCAAACCCCCAAAATACGTCATTAAACATCCAACACCAAGATCTTTATATTTCATTCACACACACACATACCCACATGAACAGACACACAAAATTGAAACATCGGAAAACAACA


Gene Sequence:
>Vu_18285(+)
ATGTTCCTCAAAATCCAATTTTTGTTCCTCATCCTTTTTCTGGCAGCCACCGTTGGTACCGCCATAGACCCAGGTTCCACTCTTTCAGCCTCTTCCTCCTCCAACCAAACGTGGTCTTCTCCCGGGGGCAGCTTCTCCCTGGGATTCATCTCCGTTCAGCCACCCACCACCCCTCCTTCCTTCATCGCCGCCATCTCCTACACCGGTGGCGACCCTGTTGTCTGGTCCGCTGGACACGGCGCAGCTGTGGACTCCGGCGGGTCCTTACAGTTCCTCTCCTCTGGCAACCTCCGCCTCGTCAACGGCTCCCGCTCCACCGTGTGGGAATCTGCCACGGCGGGCGCCACTTCAGCAGCCCTTGAGGACAATGGAAATTTGGTAATTTCGAACGGCACAAGCATCCTCTGGACAAGCTTTGACAACCCCACAGATACCCTGGTGCAGTCTCAGAATTTCAGTGTTGGTAAGGTTCTCACTTCCGAAAGCTACTTTTTTAGCCTTAGTGGAATTGGGAATTTGACTCTGAAGTGGAACAACAGCATAGAGTACTGGACTCAGGGTTTGAATTCTTCTGTGAATGTTAGTTTGGAGTCCCCTGTGTTGTCTTTGACATCGATTGGGCTTTTAGAACTTTCTGATGTGAACTTGGGTAGTCCTGTTCTTGTTGCCTATAGTAGTGACTATGATTTGAATGCTAATGTGTTTAGGGTGTTGAAGTTGGACAATGATGGGAATTTGAGGATTTATAGTACTAGTCTGGGTGGTGGAACTTCTACTGTTAGATGGGCTGCTGTTGCAAATCAATGTGAGGTTTATGCTTACTGTGGGAACTATGGTGTGTGCGGTTACAATGATTCCAGCACGGTATGTGGTTGCCCTTCAGAGAATTTTGAGATGGTTGATCCGAATAATGGTAGGAAAGGGTGCAGGAGGAAGTTGAGTCTGGATAGTTGCCAAGGGACAGCGACCATGTTGACCTTGGATCATGCTGTGGTGTTGAGTTATCCCCCTACAGCGACATCGGAGACTTTTTTCATTGGTTTATCAGCCTGTAGAACGAATTGTCTTTCGGGTTCAAGTGCCTGTTTTGCTTCTACTTCCTTGTCAGATGGCACAGGGCAGTGTGTACTAAGATCAATAGATTTTGTTAGTGGATATCAAGATCCTTCGTTGCCTAGCACTTCTTATTTCAAGGTTTGTCCACCGTTGGCACCAAATCCACCACCCTCTTCGGCAGGGACTCTGAGGGAAAGGAGTTCCAAGGTGCCTGCATGGGTTGTGGTTGTGGTTGTTTTGGGTACTCTTTTTGTTTTGCTAGCCTTGGAAGGGGGTTTGTGGATGTGGTGTTGTAGGAATAACAAGAGGTTTGGTGTGTTGTCAGCTCAGTATGCTCTTCTTGAGTATGCTTCTGGTGCTCCAGTGCAGTTCTCGTACAAGGAGCTCCAGCAAGCGACAAAGGGGTTCAAGGAGAAGCTCGGAGCTGGTGGATTTGGTGCTGTTTATAGAGGCACTCTTGTTAACAAAACTGTTGTTGCAGTGAAGCAACTTGAGGGCATTGAGCAAGGTGAGAAGCAGTTTAGGATGGAAGTTGCCACTATAAGTAGCACTCATCATCTGAATTTGGTGAGGCTTATTGGCTTTTGCTCAGAAGGGCGCCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGATCTCTTGATAATTTTCTATTCCAGACAGAACATCATTCAGGAAAATTGTTGAATTGGGAGTACCGATACAACATCGCTCTTGGCACAGCAAGAGGCATCACATACCTACACGAGGAGTGCCGTGACTGCATAGTCCATTGTGACATCAAACCTGAAAACATTCTCTTGGATGAGAATTATGTTTCCAAAGTCTCTGATTTTGGTCTTGCAAAGCTTATCAATCCCAAGGACCATAGGCATCGGACCTTAACAAGTGTGAGAGGAACCAGAGGATACTTAGCTCCTGAGTGGCTTGCAAACCTTCCTATAACATCCAAATCTGATGTTTACAGCTATGGTATGGTTTTGTTGGAGATTGTGAGTGGAAGAAGGAACTTTGATGTTTCAGAGGAAACAAACAGGAAGAAGTTCTCCATCTGGGCTTATGAAGAGTTTGAGAGAGGTAACATCAGTGCAATTTTGGACAAAAGATTAGCTGGGCAAGAAGTTGACATGGAGCAAGTAAGAAGGGCAATTCAAGCAAGCTTTTGGTGCATCCAAGAGCAGCCATCTCAGAGACCAACAATGAGCAGAGTGCTGCAAATGCTAGAAGGAGTAACTGAGGTTGAAAAGCCACCTGCCCCAAAATCAGTGATGGAAGGAACTGTCAGTGGAACCAGCACATACCTCAGTAGCAATGCCAGTGCATTTTCCACTGTTGGAGTTTCACCCCCTGGACCCTCCTCTACATCATCATTTCAGATTAGTGGTGTTTCAACCTTCAACTCAGGAAGGACCCCTGAGAAGGCAACCTCATCTCTTTTACAATCAGACACATGA

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