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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18202 LG4 49290380 49292963 PREDICTED: myb-related protein 2-like isoform X2
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 49290477 missense_variant p.Asn33Ser
G/C 49290556 synonymous_variant p.Arg59Arg
C/A 49290800 intron_variant
A/G 49290909 intron_variant
G/C 49290965 intron_variant
C/G 49291056 intron_variant
A/G 49291060 intron_variant
T/C 49291129 intron_variant
G/A 49291178 intron_variant
C/G 49291284 intron_variant
C/T 49291477 intron_variant
A/T 49291640 intron_variant
A/T 49291712 intron_variant
G/C 49291832 intron_variant
C/T 49291833 intron_variant
A/G 49291904 intron_variant
G/A 49291912 intron_variant
T/C 49291932 intron_variant
G/A 49291936 intron_variant
C/T 49292093 intron_variant
C/A 49292110 intron_variant
A/C 49292152 intron_variant
T/C 49292933 synonymous_variant p.Phe401Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18202.1
MYHQQQQQIAARNLHALRMHSHTERHMMMQGGNGACDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMGIPGLTLYHLKSHLQKYRISKNMHGQTNTGNNKIEATSRMSEASGIQMKHLSIGLQTNKNSEINDALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGAEGVEAAKVQLSELASRVSSQSLDTKFSELKELQVLWPQQTQEGQATECSMGSFLTYSEDSQRDRETHNMSLNLIAFNGPPFSVSKDCVEESMHLKPDLTLSEDVKQNMMFLSSSSDGKVVKGDFLQEGPSSLLSMNVGVLEEEKFGRTTLSKEEGWKVRNSTESGRMAVKLNHEKISPDYRLPNFEVKLDLNSHDDNDASSHCQQFDLNGFSWNC*


CDS Sequence:
>Vu_18202.1
ATGTACCATCAGCAGCAGCAGCAGATAGCAGCAAGAAACTTGCATGCTTTAAGGATGCACAGCCACACTGAGAGGCATATGATGATGCAAGGAGGCAATGGGGCTTGTGATTCAGGACTTGTTCTTTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGAAATACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAACAATAAAATTGAAGCAACAAGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAAAATTCAGAAATTAATGATGCCTTACAGATGCAAATCGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGTCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATTTAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAAGTCTTGACACTAAATTTTCAGAACTGAAAGAGCTACAGGTTCTGTGGCCACAGCAAACACAAGAGGGCCAAGCCACTGAGTGTTCAATGGGGAGTTTCTTGACATATAGTGAGGATTCTCAAAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTTCAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCATTTGAAGCCTGATCTCACATTGAGTGAAGATGTGAAGCAGAATATGATGTTTCTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTCTTACAAGAAGGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTCTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAAAGGAAGAAGGGTGGAAGGTAAGAAACAGCACTGAATCTGGGAGAATGGCAGTTAAATTGAACCATGAGAAGATTTCTCCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG


Promoter Sequence:
>Vu_18202::LG4:49288380-49290380(+)
TAAACAAAGTATAGAATGAATAGGTTTATCAGTTCAGGAAAGTGTAAATTTCATGTTCTGACACAGGTTTGGTAGAAACACATTTTACTTAACACATTGATGGTTAAAATTGATCAAAAACTTCAAAAATCAAGAAAGGGTCAATTAAGTAAGCTGTGACATCTGCCAAAGTTTGTGACCTTTAATAAATTTCAACCAGCAAGAGTGAGTTGGTTTAAAAGAATATGTGAAAGAGTGTGATCCTAGTATTCATGTGTATCTGCAGGGATTCAAAGAGAAAATGCAAGTCCAACCACTTAAAGACAAGTGTTCCACTCCACTGGTTACAAATGTCCTAAAAGATTTGCAATTATAAAGGAACCAAAGTACACTCACTAGTCACTAGTCTTTTGTCTTGTCATATGGTCCCAGCAACTTAGGATTCGTCAAGGCAAAGCCGGCAGCATGAATACTTCTACATCCTCTCTTTTTTTCTCAAGTTTATTCTCTATTGGTCACATAAGCACCAAACTTACCAGACAAGACAAAACAGAATGTGTTCTTATTCTGTTCCTTTCTTTCATAAAATAAAATCAAAGGACTTGAAGAAAAGCATCTCTCCATTATAATTCCTTTTCTTCAATGTATCTTCAACATATCTATTTCATGATTTTCTCATTACAACATCACTGTTTTCTACAGTTTCCAAGTTTAGCTAATTTTACATTTTAATCTCTCTCTAGTTTATACCAAACAAATTTTGTTTACTTTCATATTTAAAGGAAATATTTGATTAAGAAAATCTTTTTATTGGAAAATAGTATATCCTCTGACATACACAGTCAATGTATATAGAATTTTATATTTGTTTGACTAGACATTCTCTGTTAGTATTTGTAAGGAAATTTACCCAATCACAAATTGTTGATTTTTAGAATAAATACTTTAACACTCTTACCTGTCATGTTTTCTTATTGGTCCACACTAACCATATACTGAACTTAAACTCCTTTTTTTTTCAAAGAAAACATAATATTCTCTGTTGATGTATTACTTTATATTAAAGAAGTCCCAAGTGATTTGGTTTCCTCAGCTACAATCTCCAATGTAGATTGAATTCAGCAAATTTTCATTGGCATTATTGAAGAAATTGCTGGATAAATTCATCTACTATAAATTGTCTCAATTACCTATGCTAGTGAAAAGGACTAAGGGGTTGGAAGCCAAGAATATTTCTTGAAAAACATAGGGGAAGAAGTGTGGTTTCTGATGCTTTCAAGGAAAAAGGAAAAGTTGATTCTATAATTCTAGTCACAGAATTCTTCTCTAAACTTTTGGAATATGATTCCTGCATTTTCCAGTGGGACAAAAACAAATGCAGGTGCACACTGATATAAATTGATGGGTCAATTTTAATACCAAATGCAACGTGTGAGGTGAGGTGTCACAGAAAGTATAATGCACACAATTCCAATGGACAAGTGCTTCCTCCAAATCAAAAGTAGAACTGAAGAGAGCCCACATAGAAGAAAGTAAGAAGAATGACATCTCTTTTCAAGTAGCTACGAAATATATTGGATCAAGTTCAGTTTTTGAATTGCTTCTGTCCAAGATTCTATGCCTCACAAGGCCACTTTCCTAAGGGCATTTTCTTTATAAGGACATCATTGAGTACAACCAAGGCTTGTGAAGATCTTGTCAAGGAGAAAAAAAGACATGCAAGAGCAGTTGTAGAAACTTTCATATATTTTAGTTGAAACACCAAAGAAGTGCTCTTCAAGATTACAGGACAATCATATTTCACTTTATTTATAAGGTTTAGCTGTTTGGATCCAGAAGGGGTGTTACATAACAGGTAGATATATCATTTTATACGTAATAAAATCTTGAGGGCAACCCTCAAACAGTAAAGTTTTTGCCTTGTCAAAGTTTTAAGTTGGAGTCTTGTTGGTTGCCCTTTGAATATTTTCTTGTGCTTCTATATAGAGTAATAATATCATATTTTTTGGCTTGAAAGATAA


Gene Sequence:
>Vu_18202(+)
ATGTACCATCAGCAGCAGCAGCAGATAGCAGCAAGAAACTTGCATGCTTTAAGGATGCACAGCCACACTGAGAGGCATATGATGATGCAAGGAGGCAATGGGGCTTGTGATTCAGGACTTGTTCTTTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTTCATGAACGGTTCATAGAAGCAGTCAATCAACTTGGAGGAGCAGACAGTGAGTCAATGAAAATGATGAACAGTTTTTGAATCAGAAATCTACAATTTCGAAGCTTATATTGATTCCTCTTACTTTGCAGAAGCTACACCAAAAACAGTTTTGAAACTGATGGGGATTCCTGGACTTACTCTCTACCACTTAAAGAGTCATCTACAGGTAACATATTATTCCAATTACCAGAATAATTAAGATAACTTTTATTTCATTTTGGTGATGTTATGTGTTTCGGTATACCAATAATCTCGTTTAGGAGTCGAGATCAAGGATAATTTAAATACATTTTTCTCTTTCAATTATCTGATACGTTTTTAAAGATAAGACTTGACATAAGTTTCAAACTCTAAAAAAGATAATATCTCAGATGCGGTGATTAATCCAAACACCTAGACAATCTGTTTCTTATATTGCAGAACTTGCTCACTATTCTATTTTAACTGGTGAACCAATTAGCTTTTGTAACCAAATTAAAGTTCAATAACATCAAAACCTCATTCTAGTCACTGGCATTTACTGGGAAACATAGCTGAAATTATTTGTATTAGTTATCTTGTTAGTGCATATGTATTTGTGTGTACTTATTAGTTTCTCTTTCCCCTTGGCAGAAATACAGAATCAGTAAAAATATGCATGGACAAACCAATACTGGCAACAATAAAATTGGTGAGAACTTCTCTTTTGATGTGTTTTCCATGCATTTTTAATTGAATATCATGAACTACACAGAACCTATCTTTACTAATCATATAATTTGAAATTTAATTTATCTTACCGGTATCAACTACAGAAGCAACAAGCAGAATGTCAGAAGCAAGTGGAATTCAAATGAAACATTTAAGCATAGGCCTACAGACAAACAAGTAAGAAAACTTTCAAGTTCTGTCATCAAGCTTCCAATGTTCAAAATGAATTCTCTTTAATGGGAAGCAACACTAACAATAATAATCCTCCATCCAGAAATTCAGAAATTAATGATGCCTTACAGATGCAAATCGAAGTACAAAGAAGACTGCATGAGCAGCTTGAGGTATAGAACATCTTTGAACATTTAAACTTAATTTATATTGATAAACTACGAAATAAGTAAGAAAACATTTGCAATGGTCACTTCTACTTTAAATTTGAAAGTAAAATTTTAAGCAAAAGTAAAATATAATACATACATAATGAAAATGAAAATTTGTTGGAAAATTCAAATGTAAGTCTAAGTTTCACGTCGGATAGAAATAGAAAGTTGAGCAAAATATAAAGTAGAAGTCTCATGAATCCATTTCTTTAAGGTTTTGAGTTGGAAAAGCTGTCAATCTCTCATATGGATGGACTCAACTTTAATTGTTGTTGTGCTTTCCTGGTGAATTCTCTCTTTATATCAAAATTCATGAATTTGAACAGTAATTTTTATGTTATTTAATTCAGAATGTAACAGTAATTTCATCAGAACCACGTTAGAAAACTTATTGTTTGAGTCTTGTATCTCTATTCACTGGTCTCAAAACTTTCACTAGAAGCTGAAATACTTCACAATTTTGTTTTCAGAATCCAAAAATTTTCTGTTTTCAGTATACATTGGAGTTTGCAAATTGTTTCTGTTCTGATTCTTTTTCTTCACTCTTTAAGCAGGTACAGCGACACTTGCAGCTAAGGATAGAGGCACAAGGGAAGTACCTTCAGTCAGTGTTGGAAAAGGCACAAGAAACACTAGGAAGACAAAATTTAGGTGCAGAGGGTGTTGAAGCTGCCAAAGTTCAATTATCTGAACTGGCATCAAGAGTATCCTCTCAAAGTCTTGACACTAAATTTTCAGAACTGAAAGAGCTACAGGTTCTGTGGCCACAGCAAACACAAGAGGGCCAAGCCACTGAGTGTTCAATGGGGAGTTTCTTGACATATAGTGAGGATTCTCAAAGAGACAGAGAAACACATAACATGAGCCTGAATCTGATAGCCTTCAATGGCCCTCCATTTTCAGTTTCAAAAGATTGTGTGGAAGAGTCAATGCATTTGAAGCCTGATCTCACATTGAGTGAAGATGTGAAGCAGAATATGATGTTTCTTTCCTCATCAAGTGATGGTAAAGTAGTGAAGGGAGATTTCTTACAAGAAGGGCCTTCAAGCCTCTTATCCATGAATGTTGGAGTTCTAGAAGAGGAAAAATTTGGGAGAACAACTCTTTCAAAGGAAGAAGGGTGGAAGGTAAGAAACAGCACTGAATCTGGGAGAATGGCAGTTAAATTGAACCATGAGAAGATTTCTCCAGATTATAGACTTCCAAACTTTGAAGTGAAACTGGACCTGAATTCCCATGATGATAATGATGCTTCTTCCCACTGCCAACAATTTGATTTGAATGGTTTCAGCTGGAATTGCTAG

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