Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_18192	LG4	48975180	48975728	PREDICTED: putative receptor-like protein kinase At3g47110	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	48975191	synonymous_variant	p.Val4Val
C/T	48975210	missense_variant	p.Arg11Trp
G/C	48975233	missense_variant	p.Gln18His
C/T	48975258	synonymous_variant	p.Leu27Leu
C/T	48975264	missense_variant	p.Pro29Ser
G/A	48975266	synonymous_variant	p.Pro29Pro
G/A	48975281	synonymous_variant	p.Gln34Gln
C/T	48975282	missense_variant	p.Leu35Phe
A/G	48975296	synonymous_variant	p.Lys39Lys
C/T	48975360	synonymous_variant	p.Leu61Leu
C/A	48975451	missense_variant	p.Pro91His
A/T	48975566	synonymous_variant	p.Thr129Thr
G/T,*	48975607	missense_variant	p.Arg143Met
G/T	48975608	missense_variant	p.Arg143Ser
A/G	48975654	missense_variant	p.Ile159Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_18192.1

MGKVSPKEKTRRVKARRQSRSSGNKYLRPGTLAQLRCFKLSESKLESLDGPHTPITAPGTLSHAPKLETGSNLSSLQKLSLARNRLEGELPTELGNLNLSFLQILVNNFSGKFPTSNFNMSSLVFLSVTENKLTGFFFMTKERLPKFILFSLCVLPLSIHCCCMYFQSPIGYSLQLAIYLVF*

CDS Sequence:
>Vu_18192.1

ATGGGTAAGGTGTCGCCGAAGGAGAAGACTCGGAGGGTTAAGGCAAGGAGGCAGTCACGGAGCTCCGGGAACAAGTACCTGAGGCCGGGGACTCTTGCTCAGCTTCGTTGCTTCAAACTTTCGGAATCCAAGCTCGAGTCTCTAGATGGTCCACACACTCCTATCACTGCACCTGGTACGCTGTCACATGCTCCAAAGTTGGAAACAGGGTCTAATCTCTCTTCTCTTCAAAAACTTTCATTGGCAAGGAACCGTTTGGAAGGGGAGCTTCCTACTGAACTTGGTAATCTCAATCTTTCCTTTCTTCAAATCTTAGTAAACAATTTCTCTGGCAAGTTTCCCACTTCTAACTTCAACATGTCTTCCCTAGTCTTTCTATCCGTGACAGAAAACAAGCTTACAGGGTTTTTCTTCATGACGAAAGAAAGGCTTCCAAAATTTATTTTGTTTTCACTTTGCGTGCTTCCCTTGTCCATCCATTGCTGTTGTATGTATTTCCAAAGTCCTATAGGATATAGCTTACAACTTGCCATATATTTGGTCTTCTGA

Promoter Sequence:
>Vu_18192::LG4:48973180-48975180(+)

TTTATCTTAAGTTGTCTTCAAGTAGTATGAACAAAATAGCTCAATGGTTATCCGTTTCTAGTCCTTTGTGTATCTATCCATCTATCTATATATACATACATACATACATACATATATATATATATATATATATATATATATATATATATATATATATATAAAGATTAAGGCAGAGCACAGTAGCACCTTAGATTCTCTGATTCAATAATACCATCTCACCATTAGACATCATATGGTAGGCAAAGTACAGATAGAAAGGTAAGTATATCTTTCTTTAAAATATCGGAGATTCTATGCAACAGGACTTCTTTATTTACTAGTGTGTAATGAATTTGGCATGCCAAAGAGGCCCAGGAGATCGACAAACATTGAGTAGGCTGGCCACTGAAATAGTAAAGCCACATTGTTTGAGATTGAAACTCCAAATTCGTATGCTTCATCCTTTAAAAAGTGGGAGGAGAGAGTATTTAAAGTAGAAAAAAAGTAGAAGAGAAAAAAACACTGACAAAAACCTACATTGCACAGAAAAATAGAAGAAAAGTAAAAGAGAGAAAAAAATAGTTAACGTCGTTTGTACGGATTTAACAGAATGAATTTCATTGACATAAGTTTTATTAAGTGAGGACTTAATTGACGCACTTTTTAAAGAATGGATTAATTTAACATTTTCGAGCGAAACTGGAAATAAAATAGGATATTAAACCTTTTATAAATAATGTACTCTTTGTAAATAATGTCCTATTTGTAAATAATATACTATTTATTCAAAACCACTGTAAACAATACAACTTTTGAACAAATTACAAATGATTAATAACAACTATAATTAGTTCAAATATCATAATTTTTTCATTTCAAATCAACTTGATCATCCAAACTCAAAATACATTTTTCATTAAACCCATAAACTAACGAAAAACTATAAAAAAAACTAACTTCACGCATCTTAACTATATTCAAAACTCAGCTTAAGAACAATTATATTTAACATTCATAATCTACACATTATAGTAATATCTCAATAAAAATATTAAATGTAAAGTACATCAAATCAAACATCTATCAGCTTAAACTCCAAATTACGTCCAACTAAAACTCAATATTCTCCGTTTTCAAGAATTCATTTATGTTCAAAACAAAATATAAACTCTATATAAAAATCAAGCTAGTGTAACCAAGTTGTCTTCACCTCTGTTGTCGTAAGATTCTATAAAAAAAAACATAAGAAAGAGTAAATTGAACTATATCAAATTTTCGCAAAACTTAAAATAAAATCTTTATTGAGCCAATCAATTTCAAGATTTGGTTGCATTCAATTTTATGCACATAACCAAGATGAAAAAAAAAAGTAAAAACGAGGGGGCACTAATAAAAAGTACGCTTTTTAACTCGCCCAATAGGCTTCGGTTCGTGGAAAACCGAAGTCTATCAAAATGCGGTGACATTGTTGTAATTAAGCCAAACTTATAGGCATTGGTTCTCTCTTACCCGAAGCACATAAGAGATATGATCTCGGTTAAGAAGGCACCCGAGGCAGAAAGACCTGTGTACCAGTCAGACTTAAGACATCAGTTGGCCTAGGAACCGAGCCAAAATCTTTATTTATTTACAAACTGAGCGAAGTGGAGAGAGGGGGCTGGTTGGTTTGGTTGCGCCTTCATCACCTCCATGGGATCCGGGTGCCACCACGGTCGAATTCAGATCCCGTGCCGCTCGACCACCATATGGCTCGCAGTGCTCACCGTTGTCGTCCTGTTCAACGGTGTAGAGGCTGGTGGAGGACAGGCGGGAGAAGCAGAAGCCAAGGACCCTAGCGGCGAAAACCCTAGCGGCCCCATTCCTTTCTTTCCCTTTCTGTTCCGCCTTCTATTTTCACCTTCCACCTCACCACTATGTACCAACCTTTCTCTTTCTCTCTTCTTCTTCTTCTTCTTGATTTTTGTTTTTCAATTTTATTTTCTTTTTTTTTCAGGCTGGGTTGAGTGTGGGGAACGAGAGAA

Gene Sequence:

>Vu_18192(+)