Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18140 LG4 47534678 47535529 PREDICTED: ethylene-responsive transcription factor LEP
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to gibberellin, positive regulation of seed germination, response to gibberellin, regulation of transcription, DNA-templated, positive regulation of seed germination
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 47535125 missense_variant p.Ser150Thr
G/A 47535325 synonymous_variant p.Gly216Gly
T/C 47535373 synonymous_variant p.Thr232Thr
C/T 47535384 missense_variant p.Ser236Leu
T/A 47535386 missense_variant p.Cys237Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18140.1
MSSSKTKKKQTTTTQEHQQHDTVWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGPRARTNFVYPDTPPGSSVTTILSPDEQTQTQIQIHQVQEDLSSLLNPNLFSQPDPNPQFSLGGYSGVTTTPTFSTTEVVSSGGYSYSHGYTEGGSNVEDSHSHSHSHSHSHFNLFDDGETQLPPLPPDITSSIAYETGHGFYGDGVGFSDPSFSLTDTGSCYPFSGFESGDYVVHSPLFSAMPPVSDNVAMGHEGFDLGSSSYFFRN*


CDS Sequence:
>Vu_18140.1
ATGAGTTCCTCCAAAACCAAAAAGAAGCAAACCACAACAACACAAGAACATCAACAACATGATACGGTTTGGGGAGGGAGGTACCTTGGTGTGAGGAGGAGGCCGTGGGGAAGGTATGCGGCGGAAATTCGGGACCCTTCCACCAAGGAAAGACATTGGTTGGGTACATTTGACACCGCAGAAGAGGCTGCTCTGGCTTACGACAGAGCGGCCCGCTCCATGCGTGGACCACGTGCCCGAACCAATTTCGTCTACCCGGATACTCCACCGGGTTCTTCCGTCACCACCATCCTCTCCCCTGATGAACAAACCCAAACCCAAATCCAAATCCATCAGGTGCAAGAAGACCTCTCGTCTTTACTCAACCCGAACCTCTTTTCACAACCTGACCCAAACCCGCAATTTTCCTTGGGCGGGTACTCGGGTGTAACGACCACTCCCACATTTTCTACCACCGAAGTTGTTTCGTCCGGTGGCTATAGCTATAGTCATGGTTACACCGAAGGAGGAAGCAACGTGGAGGATTCACATTCACATTCTCATTCTCATTCTCATTCTCATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATTGCCTATGAAACGGGGCATGGGTTTTACGGAGACGGTGTCGGGTTTTCTGACCCGAGTTTTAGTTTGACTGATACCGGATCGTGTTACCCGTTTTCTGGGTTCGAATCCGGTGATTACGTGGTGCACAGTCCACTTTTCAGTGCAATGCCACCGGTGTCCGATAACGTGGCAATGGGTCACGAGGGTTTTGATCTGGGAAGCTCTTCTTATTTCTTCCGAAATTAG


Promoter Sequence:
>Vu_18140::LG4:47532678-47534678(+)
CCTATAAATATCCACAATAAAGGAAACAAGTTAAAGGTGTGTCATAAAATAACTTAATGGAAAAATAGAAAGAATTAGATATTCATATAGTTTTTGTAATCATCATTATTTGAGTTAAGTATGTTCATAAAATCCAATATCATCATAGAAAACCTTAAAAACTTCGTTACAGTGAAATAATTAAATTTAGTTCAACTCTCTAAAAATATTAAATATGATTTTAATCTTTAATCCTTCACATAAAATTAGAATTCCGTTTCATCCCAATTTTGATACAATTTGATTTTTAAATATTAAAAATGAATAAATATAGTTTTCTAATTTATGTTAAATTATATCAAATTAGAATTTGAGCTGTTTAAATAGCTTATCACCTTCTAATTTAAATGTGAGTCTCAAACATGATTTAATATAAAAGAAATTTAACATGATTTAATATAAAAGAAATTTAATTGGATTAAGACGATTAAATTTATTTATTTTTGCGTTAAATATATTTGAAGCACAATTGGAATTTGCCTTTATCGAAATTTTGCTACATTTTGTTTTCCAAACTTTAAAAATAATAAAAAAATCTAACATTGGGTTAAAAATATTATTCATTCATTTTTAAAACTTTAATACTAAAATGTATCAAAATTTTGGATGGACGAATTTCAATTTCCTATCAAAATTCAAGTATTAAAAACAAATTTAACGCTTTGATTTTATAATTTAATATCAAATTTAGAAACTAGAAAGATATTTAATAAAAAAAAATGACTTTCCACTGAAACAAAAGATGGGGTAATTTTCTTTTCAACATGAAATCATTGGAGCAGGAGGGCAAAGCATGTTGCCTAAGCATGCAGCCAAATGAAGAATGAGTAGATATTGATGATAGCTCCCACATAATTACTAATGATAAATCTAAGTAGTTTATTCCAAAAGATCTTAGCTTCGATGCACTTCTAATGGGGCCTTAAAAATCATCAAAAGGGAAACAAAATTCCTTCCACCTGCAATGATAATTAGAATTGTGCTAATATGCAACTCATAAGACTTTTTTTTCCTTCATTCATTCATTGGATCATGAAGAAATTAGTTAAGAAAAGTACTTATTAAATTATATAGCGACTCTAAGCATATATGATATTAGATTTTGGACACTCTCTAATATGATTAGTTCCTTGTTCATGTTCAATCTCCTGATTTGATAGAAAGGTCACATGCAACAACTTTGGACTATCCGAAGGGTTATTCGAGTACAAGCATACAATATAGACAATACACTAAACTAAACAGAACTTTGGCCAAAATCAAAACACAGAACAACTAATATAATTGGGGAATAATCATGAAATGGGGTATCTATGAGAACATGCTCGTCATGGGGCATTTAGATTTCTAATTATATCACCCACTAATTATATAATTCTCTTCAATTAACCCCTCATCCTCCTCTCATCATTTGAAACTCATTTCTAACAGAGTTTTATGGTTGTTCCAAGTAAATGATGGATTTTCATGACTATCAAAAAAGGAAAAAAAAGATGGATTTTGTTGCCCTTAATTAATTTCCACCCTTTCATTAATATCTAACATATGATTGATTAGATTGGTTTGATGAATAACAAAGACACTATAACTTTGAATCCACCATAGAAGAGCTTTAACATGTATATGGTATATGGATAAAGCTCCGAAAGAAAAGAAAAATTTAAAGAGGGCACGTGTTGGCATGCTTGGGACTAGTTATTAAGAAAAGGGCATAGATGTAAAATGAAATACAGTTATGGGGACAATGAGCGTTTTGGAGAGACATAGCTTCCTTATATAAACCATGTTGTAACTTGTTGATTTCCCCACACCAACACCAAAACAAAAACTGAAGAAACTTCAAGAGTCACTAAAAACTAACCAACCTTGCATGCCAAGTTCAAACTTCATTCATCTCTAATTTTGTTAGTTTTCCTTCATTCTTCATTAGTTTCACTTTCGTTGACGTGAAAACTATAGCA


Gene Sequence:
>Vu_18140(+)
ATGAGTTCCTCCAAAACCAAAAAGAAGCAAACCACAACAACACAAGAACATCAACAACATGATACGGTTTGGGGAGGGAGGTACCTTGGTGTGAGGAGGAGGCCGTGGGGAAGGTATGCGGCGGAAATTCGGGACCCTTCCACCAAGGAAAGACATTGGTTGGGTACATTTGACACCGCAGAAGAGGCTGCTCTGGCTTACGACAGAGCGGCCCGCTCCATGCGTGGACCACGTGCCCGAACCAATTTCGTCTACCCGGATACTCCACCGGGTTCTTCCGTCACCACCATCCTCTCCCCTGATGAACAAACCCAAACCCAAATCCAAATCCATCAGGTGCAAGAAGACCTCTCGTCTTTACTCAACCCGAACCTCTTTTCACAACCTGACCCAAACCCGCAATTTTCCTTGGGCGGGTACTCGGGTGTAACGACCACTCCCACATTTTCTACCACCGAAGTTGTTTCGTCCGGTGGCTATAGCTATAGTCATGGTTACACCGAAGGAGGAAGCAACGTGGAGGATTCACATTCACATTCTCATTCTCATTCTCATTCTCATTTTAATCTCTTTGATGATGGTGAAACGCAGCTTCCACCGTTGCCACCGGATATCACAAGCTCCATTGCCTATGAAACGGGGCATGGGTTTTACGGAGACGGTGTCGGGTTTTCTGACCCGAGTTTTAGTTTGACTGATACCGGATCGTGTTACCCGTTTTCTGGGTTCGAATCCGGTGATTACGTGGTGCACAGTCCACTTTTCAGTGCAATGCCACCGGTGTCCGATAACGTGGCAATGGGTCACGAGGGTTTTGATCTGGGAAGCTCTTCTTATTTCTTCCGAAATTAG