Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18104 LG4 46599432 46600283 PREDICTED: trihelix transcription factor GTL1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 46599445 missense_variant p.Ser215Pro
G/T 46599462 missense_variant p.Pro209His
T/C 46599468 missense_variant p.His207Arg
C/A 46599486 missense_variant p.Arg201Leu
C/T 46599499 missense_variant p.Val197Ile
C/A 46599508 stop_gained p.Gly194*
C/T 46599512 synonymous_variant p.Arg192Arg
G/T 46599538 missense_variant p.His184Asn
A/T 46599544 stop_lost p.Ter182Argext*?
T/G 46599581 synonymous_variant p.Pro169Pro
G/T 46599604 missense_variant p.Pro162Thr
T/C 46599655 missense_variant p.Ile145Val
C/T 46599734 synonymous_variant p.Arg118Arg
A/G 46599835 intron_variant
A/G 46599853 intron_variant
C/T 46600019 missense_variant p.Gly89Arg
C/T 46600028 missense_variant p.Val86Ile
C/T 46600091 missense_variant p.Ala65Thr
G/A 46600100 missense_variant p.Arg62Trp
G/T,* 46600149 synonymous_variant p.Ala45Ala
A/G 46600198 missense_variant p.Val29Ala
C/T 46600199 missense_variant p.Val29Ile
A/C 46600215 synonymous_variant p.Pro23Pro
G/A 46600217 missense_variant p.Pro23Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18104.1
MPKEIFFLSRQLPSLLHALGSPPIPHTAVVIYSPETPLANLEGGAAAISEGLKAEDGEVGDRNSAASRWPKEETMALLKIRSDMDVAFGDTNPKAPLWDQVSKKLAELGYNRSSKKCKEKFENIYKYHRRTKEGRCGKSNGSKTYTFFEQLEALEGCHSLPTHVPDNNTNVDVILDAVPCSVSASVREHS*TEGNFRTRISTFVLRAPSSPPETLIPR*


CDS Sequence:
>Vu_18104.1
ATGCCCAAGGAGATCTTCTTTCTCTCAAGACAGCTGCCTTCCCTTCTCCACGCTTTAGGTTCTCCTCCTATACCTCACACTGCTGTCGTGATATATTCACCGGAAACTCCTCTTGCGAACCTGGAGGGGGGCGCCGCTGCGATCTCCGAGGGGCTCAAAGCAGAGGACGGCGAAGTTGGTGACCGGAATTCCGCCGCGAGTCGATGGCCTAAAGAGGAAACAATGGCTTTACTCAAGATAAGGTCTGACATGGACGTTGCTTTCGGAGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGAAATTAGCGGAGCTAGGTTATAATAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTATACATTTTTCGAGCAATTGGAAGCTTTAGAAGGATGCCACTCACTTCCGACCCACGTGCCCGACAACAACACCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCATCCGTAAGGGAGCATTCTTAAACGGAAGGGAACTTCCGTACACGAATATCGACATTCGTATTACGAGCACCTTCCTCACCACCAGAAACTCTCATCCCAAGGTAG


Promoter Sequence:
>Vu_18104::LG4:46600283-46602283(-)
ACCGTCTTCGGGGTACAACCTTCATTCGATCATACATTGTGCTTTGCTTCATTTCATCCTCACGTTCAAACCCCGGGGTTTGCTGCTAATGTTGAACCGACGTACTTTGACATGGATCTTCACTTCCACAAAACGCTCTCTCCCCAAACTCCCGACCCTTATCTTCATTTTTGGCTTCAACCAACATTCTTAAATGATGAATACTACTTTGCATGTCGGCAATAACCCGCGTTTGTTCTTCTACAACAAGAATTATTTTCTCCTTATCTCCTCTATTTTGCTTGTTAAATGGCACACCATATTTTTGAACAACTTCTTTCACCATACCATAACAAAGCTCTTCTTTCGACACTCCAAAATCAACAACAACCTGAAAAAAATGAACAAAGTTCATTATATAAAACACGAAATAAAAAATAGATTGCACCACACATTCCTCAAACAGATTCGCACAATCTCGAATTCTAGTTCAGATTTATCCATTCTATCCTGTTTTCAAACATATTTGGAGTCCAAAATCACTTCACAATCAATCATAATCATCATAAACACCAAGATATCAATTTTCTCATGCAAAACCAACTCTTTTAGTCACACACCAACCAGATTTTTCTACATAATTTTCCAGCACTCAAACAGCCCCAAAAATGTGTCAAATCCATCCAAAAATAGTTTATACACATCACCCCTTCATCAATCATCAAAACAGATTTAAAATAGCACAATACTCAAGTGAATTTCCCAAAAACTCATCATCAATTTTACTCATCAAAATACACCTTTGGATTTATCATTTTCCACACATAAACTTTTTACAATATCAAAATATTGATGGTTAACTCACCATATTTCCATCTTACCAAAGATTTCCATACAATCCATCCAAAATTCATCAACCAACCAAAACAAACAATTTTTGTATTTGATAAAAAGTAAGTTGAAACTCACTTATTTTCCATCCCATTTCACAATCTAATCCATCAAAAACTTCATATACATGTATATCAACATGGTAGAACGAAAATCCACCATCAATCCAACATTTATTCATCAATTTTCACAAGTCTTTCATCATAAAGTTCATAGAAAAATTCATAGATCAAAGTCATGGTAATAACCCATTTCAATCAACCTCTTGAAATCATATCATACATTTAACCAAACCAATTTTCCATACACTTCATCATGACAACATCCAGAAAAAATTTTAGAAATCAAGTTTGAGTTAGCTCCTCTTACCTCCTGAAGACCTCCTTTGCAAACCTTGAATCCATTTCTACAAATACTTTTCAACAAAAACAACCATTAACCAATATTATTGAAAGAATCTACAAAATTTTCAATACAACATTTACTTGCATTGTTTTGAGGTTGTTGTGCATTGGAATCCATGAGTGTCAAAGAAACATTGTATAAAAGATAAGTCAAAATAACCCAACAACAACCACAAACACAAAAAATTGAAACTTTACACCAAATTGCCAAGCATTTCTAAGTCATTTTAAAATTTTTTAATCCTTTTTACATGGAGCAATCACATGATGACACGGAAATGATGTTAAAAATTTGTCAAAAAATAGTGTCAAAGTATCATTATCCAAATATATATAAATATACATCCTATCATGAAAAAGAGAAAAAAATATAAAAAAAGTTAATCACCTATCTATATATCATCTCCACTTTTTTTCATTTGATTTGGGTATTATATTTGTAATTGTCACATACCAAATACATAGGATTAAATTAGCTTTTTGTATTTCATAAAATTAATCACCTATCTATATAAAAAATAATGTTTTTTACCCTTAATATATAGAAAATATATTAATTTTGTTGTGACATTCACTTTGAAAACATATGAATCTCACTCACAAGCAACCCAAAACAATAACAAGAATAATGATCAGAATTCCATCCAAACCCAATACACGTAAGATAATCTAGCTACTCCCCTTAACTAGAATCCAAGGATTTGCTCACGCTCTTGAAGGACCTCC


Gene Sequence:
>Vu_18104(-)
ATGCCCAAGGAGATCTTCTTTCTCTCAAGACAGCTGCCTTCCCTTCTCCACGCTTTAGGTTCTCCTCCTATACCTCACACTGCTGTCGTGATATATTCACCGGAAACTCCTCTTGCGAACCTGGAGGGGGGCGCCGCTGCGATCTCCGAGGGGCTCAAAGCAGAGGACGGCGAAGTTGGTGACCGGAATTCCGCCGCGAGTCGATGGCCTAAAGAGGAAACAATGGCTTTACTCAAGATAAGGTCTGACATGGACGTTGCTTTCGGAGATACAAACCCCAAAGCCCCTCTCTGGGACCAAGTCTCAAAGTAAGTCCCTCTTCGTTTCCCCTGGAATCCCCATTATTCTCAAGCTTATTCCCTAATTAGTAATGCTAATGTTAAACATATATGTACGATACTGTATACATTCTAGTCGAACATAGTTAAGTTGAACCATTTCTTTTTGTTTGTGTGATGATAACGTAGTGATTGAATTAATTTGAAAATCTTTTGTATATTCAGGAAATTAGCGGAGCTAGGTTATAATAGGAGTTCGAAGAAGTGCAAGGAGAAATTCGAGAACATTTACAAGTACCATAGGAGAACCAAGGAAGGTCGTTGTGGCAAATCCAACGGTAGCAAGACTTATACATTTTTCGAGCAATTGGAAGCTTTAGAAGGATGCCACTCACTTCCGACCCACGTGCCCGACAACAACACCAACGTCGATGTTATTTTAGATGCGGTTCCGTGTTCCGTGAGTGCATCCGTAAGGGAGCATTCTTAAACGGAAGGGAACTTCCGTACACGAATATCGACATTCGTATTACGAGCACCTTCCTCACCACCAGAAACTCTCATCCCAAGGTAG