Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_18090 LG4 46398490 46400292 PREDICTED: LOB domain-containing protein 41-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 46398666 5_prime_UTR_variant
G/C 46399097 downstream_gene_variant
A/C 46399104 downstream_gene_variant
G/T 46399109 downstream_gene_variant
T/C 46399111 downstream_gene_variant
A/T 46399291 downstream_gene_variant
C/T 46399306 downstream_gene_variant
A/T 46399363 downstream_gene_variant
C/T 46399375 downstream_gene_variant
T/G 46399522 missense_variant p.Ile77Met
A/C 46399705 missense_variant p.Lys138Asn
G/T 46399709 missense_variant p.Ala140Ser
A/T 46400139 3_prime_UTR_variant
C/T 46400154 3_prime_UTR_variant
A/G 46400195 3_prime_UTR_variant
A/T 46400198 3_prime_UTR_variant
C/T 46400287 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_18090.1
MRMSCNGCRVLRKGCSEDCTIRPCLEWIKNPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEVAANGRAPPLKACDIRHVSKDEKTANRTQKAKTRIRVKRTGGDVLIKPKAPTVTGFVPVEAETNQTTSHESGLSHLSEAAAIVEGESKESESVVSVETCNLFGETKTSDRFGATNDEIGLELRLGFEPVSREHHMVPMKKRRIEVKSSCDLMELGLESSA*


CDS Sequence:
>Vu_18090.1
ATGCGAATGAGTTGTAATGGGTGTCGTGTGTTGCGAAAAGGGTGCAGCGAAGATTGTACAATAAGACCGTGTTTGGAATGGATCAAGAACCCAGAATCGCAGGCTAATGCCACCGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGCCTCATGAATCTCATCAACGCTGGTCCTCAAAACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAGCCGTTTTGAAAGGCGAGCCGATCACACCAATCACATCGGAAGTGGCGGCGAATGGGCGGGCCCCACCTCTGAAGGCATGCGACATTCGACACGTGTCAAAAGACGAGAAAACGGCGAATCGGACTCAAAAGGCCAAGACTCGAATCCGGGTTAAGCGAACCGGCGGCGACGTTCTTATCAAACCGAAAGCCCCGACGGTGACCGGGTTTGTTCCGGTTGAAGCGGAGACGAACCAGACTACGAGTCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCAGCCATCGTGGAAGGAGAGAGTAAAGAGAGTGAAAGTGTGGTGTCGGTGGAAACTTGCAACCTATTTGGTGAGACAAAGACGAGTGATCGATTCGGTGCAACTAATGATGAAATTGGTTTGGAATTGAGGCTTGGGTTTGAACCGGTTTCACGTGAGCATCACATGGTTCCAATGAAGAAGAGAAGAATAGAAGTGAAAAGTAGCTGTGACTTAATGGAGTTAGGACTTGAGTCCTCGGCTTGA


Promoter Sequence:
>Vu_18090::LG4:46396490-46398490(+)
CGATAAGCTACTAAAAATCAAACTTGCAATTTCATACATATCATTGAAACTTAGTGAATAATATTCTAAACCTTAAATAATACAAGAACTACAACACACATTACCAAAACTATAGCAAAAACCATACCATACATTACCAAAACTATAACAATTTCATGCATTATCAAAATTAAAACAAAAATTATACCATACATTACCAAAACTATAGAAACTTTATACATTACCAAAACTATAGCATTATCCAAAAACTAATGAAGAAATCACGTTAAAAATGCAAAAGGGCATAAATACCTGGAAGAGGAACGGCGGAAACGCTTGGTGCAAAGTCGCAGCGGAGAGGGAATGACGAGTTTCAAACGATTTTGATCGGCTAAAACTGTTTCAAACGCGACACAAATGAGAAAGGACCGAATAATTTCAAGTTTAAACGGTGCAAAAACGCGTACCTGAGATGATGGCTGTCGCAGGAGAAGAAAAACGCGAAAACCAGCGCTGCGCGATGAAGAAGACGACACTGTTCCAACGTTTTGTTTTTTAACTCTGACTGGGGAATCTACCGCGGTTCACTACTTAACCGCGGTATAAAAGGGTTATATGCCGCGGTTTAACATCCAACCGCGGCATATACTAATTTAAAAAATTATCAGAAATGGCATTTTTGAAATTATTTTCAAACTATATGTCGCGGTTCAGCGGGCAACCGCGGCATATACCTCGAAATATTTCAAATAAACATTAAATTAATTTCAGATAGGAGAATATGCCGCGGCTGCCTCGTAGAACCGCGGCATATACCCCTGAAACGTGTTCAACACAACTGTCTCCCCAACTGCCTTTCAGAGAATTTCAGAAAGTTACAGGGGGTATATGTCGCGGTTCTCTGGGGAACCGCGGCATATACCCCCTGTAACTTCTGAAATTCTCTGACTGGCAGAGAAGTTGAGACGTTACAGGGGTATATGCCGCGGTTCCCCAGAGAACCGCGGCATATACCCCCTGTAACTTTTCGAATTCTCTGACCCTAGTCAGCACCTGCAATAAATTGGCATGGGTATATGCCGCGGTTGTGCAGAGAACCGCGGCATATACTCTGTTATTTAATTTTTTATTCATACGTGGCGTCAAAGGCAATGGTTGACTGGGGTATATGCCGCGGTTCCCAGTAGAACCGCGGCATATATGTTCGTTTTATTTACAAAACTGCCACCGCGCACCATTATGCTGCGGTTTTCGTTGAACCGTGGCATAATGTGCGCTGTAAAAACCCGATTTTTTACTAGTGATAACATATCATAACTTTAGTAAAAAACATAAAATATAATTGATAAAGAGATTAAGGCATAAGATAAATTAACAAAACTCTATACCGTTTAAGAAAGGTGACTACTTAGATGACCTAGGTCCAATTACATAAAATCTCATAAAACCATTATAAATAATATATTTACAAAATAATTTTTACATATTTATTTTAATATTTATTACTATTTTATGTACATACTTGACTTGACTTTGAGTATACAAGTGTTTTTAGAGACACCACAAATATCTACACTTAATACATCTCCTACATATCCTTTTATCTCAACGCATGAAAGAAAACATCTAAAGAAAAAACAAGAGAACTTATTGTGAAACATTTTCTAAAATACATAAAAAAACAAAACGATTTATTCTCTTAATAAAATATAATATTTCTTTCATATATATTAACACTATTAATTACATCTTAGTCACATGTGACACTTAGAAATAGTAATAGTAATAGACAAGAAAATAGATCGTTCTCAATTTTTTTATTTGGAAAATTCTATCGTAGCAATGCATGATCATGATCATGGGTGGCGTGCGAATGAAGTTCGACGCCACGTCGACAGGAAGTATAAAACACGCGCGAGAGATGAGAGTGGGTGTAGTCGTCCTGTACAAATGGGAAAAAGTGGAATCATTATGCTTCGCTTCAAACTAGAAAAGTGGTTCGAAGTTCCACCACCCCCTTG


Gene Sequence:
>Vu_18090(+)
GAATGTGGAAAAAAATAAAAACCTCAAAACCATGTTTCATCTTATGTCATGTTAGGAAAATGATAAATAATAAATGTAAGAATAAAACAAAAGAAAAAACAATTCTTGAGAAACCCACAACATGTGAAAAACCCAGCAGCGCCGGAACCCCAACACTATAAAGTTCCCTCTTTTTCTCACAATCCCAATTCCAATAAAAAAAATCCAATTTTCTCTCACTTTCTTCTCCTTAATTTCTCTTACAAACTTCAATCGGGGTTCAGAGGGTATAGAAAAAAAATTTAGGGCTGTGAGAAAATGCGAATGAGTTGTAATGGGTGTCGTGTGTTGCGAAAAGGGTGCAGCGAAGATTGTACAATAAGACCGTGTTTGGAATGGATCAAGAACCCAGAATCGCAGGCTAATGCCACCGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGCCTCATGAATCTCATCAACGCTGGTCCTCAAAACCTTCGACCAGGTTCGAATTCTGAATTACAATTGATTTTTCTTTTAATTCTTTAATTTTCTTGTTGCATGTCTAAGTTCTTTTGACCAAAACTCAAATCTAATCTCTTTACAAATTTTTTGTGTGGTGTTTGTTCAAAAATTCGATTGATAGAAGTTTCAACACCGTTTACTAAAGAAATCTAATGAAAAATCTTACATGCAATTGCTTAACACTACACTTAATTTTTCTTTTTTGAGAAAGGAATTTTGTCAGTAAAGGTTACATTTTTACTGTGTTTTTTTCTTTTATTTTCTATTTTCTTTGGGTTAATCGGTCCTGTGACAATAAATTGATAAAGTCAATATATTTAGCAAGGATTAAGGTGAATTTTTTAAATTAAAAGAAAACTGGAATTTAAACTGACTTTTCGTCTAAATTGTTTTTAAATGTTAAAGAAAAACAATTTTAGGCACAAATGATCTTGCATGCAGTTATTTAGAAGCGTGTAATAGATTATGGAGTTTTTTGTTTGCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAGCCGTTTTGAAAGGCGAGCCGATCACACCAATCACATCGGAAGTGGCGGCGAATGGGCGGGCCCCACCTCTGAAGGCATGCGACATTCGACACGTGTCAAAAGACGAGAAAACGGCGAATCGGACTCAAAAGGCCAAGACTCGAATCCGGGTTAAGCGAACCGGCGGCGACGTTCTTATCAAACCGAAAGCCCCGACGGTGACCGGGTTTGTTCCGGTTGAAGCGGAGACGAACCAGACTACGAGTCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCAGCCATCGTGGAAGGAGAGAGTAAAGAGAGTGAAAGTGTGGTGTCGGTGGAAACTTGCAACCTATTTGGTGAGACAAAGACGAGTGATCGATTCGGTGCAACTAATGATGAAATTGGTTTGGAATTGAGGCTTGGGTTTGAACCGGTTTCACGTGAGCATCACATGGTTCCAATGAAGAAGAGAAGAATAGAAGTGAAAAGTAGCTGTGACTTAATGGAGTTAGGACTTGAGTCCTCGGCTTGAAAATAATGGCTCGCTTAGTATTTTTTGAGAAAAACCACTTTTTCAATTAAATCTTGTAGGTGAAATGATAAGTTTAGAAGTTTTTTTTCTTTTTCTTTCTTTTCGATTTAATATTTGTGAATGAGTTGTTGTACAAAATGGTTAATGTGATAAATGGAGGAAAGTTTCTTTTT