Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17859 LG4 41381832 41383390 PREDICTED: transcription factor MYB46-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to brassinosteroid stimulus, cellular response to brassinosteroid stimulus, regulation of transcription, DNA-templated, regulation of seed growth, regulation of seed growth, regulation of transcription, DNA-templated, cellular response to brassinosteroid stimulus, positive regulation of transcription, DNA-templated, integument development, quiescent center organization, integument development, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, negative regulation of long-day photoperiodism, flowering, negative regulation of long-day photoperiodism, flowering, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, negative regulation of long-day photoperiodism, flowering, integument development, endothelial cell proliferation, regulation of seed growth, regulation of transcription, DNA-templated, negative regulation of long-day photoperiodism, flowering, negative regulation of cell division, regulation of transcription, DNA-templated, negative regulation of long-day photoperiodism, flowering, regulation of transcription, DNA-templated, regulation of seed growth, integument development, regulation of seed growth, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, cytosol, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein homodimerization activity, transcription cis-regulatory region binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/G 41382055 missense_variant p.Glu343Gln
C/T 41382066 missense_variant p.Gly339Glu
A/C 41382181 missense_variant p.Trp301Gly
C/T 41382206 stop_gained p.Trp292*
A/G 41382390 intron_variant
C/A 41382411 intron_variant
A/G 41382562 missense_variant p.Ile250Thr
T/G 41382565 missense_variant p.Lys249Thr
C/A 41382568 missense_variant p.Ser248Ile
A/C 41382574 missense_variant p.Leu246Arg
C/T 41382815 missense_variant p.Asp166Asn
G/C 41382819 synonymous_variant p.Gly164Gly
A/T 41382823 missense_variant p.Met163Lys
G/C 41383385 missense_variant p.Ser2Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17859.1
MSAEMNVFPSPPVTVIGLQCFNVLGVMGHVGDMKSESSDIPFQILNPKRVEEEESSGVEATGLSLKPGEELQANSYPAKGKIRHTKLCARGHWRSAEDAKLKEFVAQFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVCRRRKPTFQILPPKDLDLILPVNGCSESTISSTIIDESASTGTNLSFTSSSAKSTPLPFLNHCQVQNLQTFGGALMGLSGKSRTPDRNVSFNKHFGAGKGSSETGHMGRVMGVDQSHYSDSNSSEVSESVATNKTTNLSMYGESDKRANMLFIDFLGRKREEEFGIVSNYGCDDEEKWICLHSRVQLVPFMAKG*


CDS Sequence:
>Vu_17859.1
ATGAGCGCTGAAATGAATGTTTTTCCTTCACCTCCGGTTACTGTTATTGGTCTCCAGTGTTTCAACGTTTTAGGGGTGATGGGTCATGTTGGAGACATGAAATCTGAAAGTTCTGATATACCTTTTCAGATTTTGAATCCCAAACGCGTGGAGGAAGAAGAATCTTCTGGGGTTGAAGCCACTGGCTTGTCTTTGAAACCTGGTGAAGAGCTTCAAGCTAATAGTTATCCTGCTAAAGGGAAAATCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGATCAGCTGAAGATGCCAAACTTAAAGAGTTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAAAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCAGGTAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTGCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCAGTGAATGGATGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTTCCTCTTCAGCAAAATCAACTCCTCTGCCTTTTCTAAACCATTGTCAAGTTCAGAATCTCCAAACCTTTGGTGGTGCTCTAATGGGTTTATCTGGGAAAAGCAGGACACCAGACAGGAATGTGAGTTTCAACAAGCATTTTGGTGCTGGGAAAGGTTCATCTGAGACTGGACACATGGGAAGGGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGAATCAGTTGCCACCAACAAGACTACCAATTTATCAATGTATGGGGAAAGTGATAAGAGGGCCAACATGTTATTCATTGATTTTCTTGGAAGGAAGAGGGAAGAGGAGTTTGGAATAGTGAGCAATTATGGTTGTGATGATGAAGAGAAATGGATCTGCCTTCATTCACGTGTGCAATTAGTCCCATTTATGGCCAAAGGTTAA


Promoter Sequence:
>Vu_17859::LG4:41383390-41385390(-)
TATTTTTAAATTTATATATATTAAAGGGTTAAATATGATTTTAGTCCCTGAACTTTTATGCAAAATTATAATTCGTCCCACTTCTAAACTTTTATATATTTTGGTTATCAAAATTTAAAAATGAATAGATATAATTCTTTTAACCCAATTATGTTAATTTTTTTTTTGGTCCAATGTCTTTCTCAGCTAATATTAAAATAAAAAAGTAATTGGGTTAAAAGAAATGTATCCATTCATATTTAAAATTTGGAGACCAAAATGTGTTAAAGTTCGGGACATGGATTAGTTCCAATTTTGCATCGAAGTTCAACATATTTAACCTAATAATAAAACATAAATTTGAATTGAATCTATAAAATTTTGTTAAGAAATGAATTTTAAGCGTAACTCAAGGCAAACAACCTAGGATATGCTTTAACTTGACTCTGATATCATGTTAAAAAATACACTTAAAGTCTAACTCAATCTATAAAACTAATTTGTAAGGTGATGTTTATACCTACTTATATACTATCAATTGACTTTTATCTCACTTCCTAAAATTTTAATTCGCTATCCGAAGAAGCCTACAATTATTCATTTCACTTAATTTTATTTATCCAACATTATCCACTTATCCATTTTAACCTAAACATGTGTTTAAATTTCTTTTAGTTTGATTAGACACATATTTTTCTCATCCCTAAAAAAGTCATTGTTATTTTAAGCAATTTAATGTGTGTTTATCTAATTTTCTTAAATAAATAATTTTCTACTTATTTTAATATGAGAATCCTATCCACTTATGGAATAAGTGATTATTTTTAAAATTCTTATATACGTTTATTTTAAATTTAATCAACCCGAACTAAAATAGTTTCATTTTGGAAACCTAAAGAAAAAATTTACTAATAAATTCTTAACCTAAATCCACCTCTTATCCTTTATTTTATGAAGGTACAATTTTAGTCTCTTGACATTGTGTTTTAAATTAAACAGCTTCGATTTATGAACAGTGTAAATAATATCAATATTAATTACATATAATTAAACAATAATATGAACATTATTTATTTCAAAAGTATCGAAAATGTTTGCAGTAGTAAGATATATATATATATACATATATATATATATATATATATATATATATATATATATATATGAAAATTTCCTTTATCCATTTTTATTTTATTTTTATATTTCAAGTTATTATTTTATTTAAATTTAATTGATTTTCTAAATTAACCATTTTCTTAATTTAACTATTTTTCTAAATTAAATAAATAAAAATCATTTACTGAAACAAATAATTTATAAAATAAATAAATAATGATCTACAATTAAATTATAAAAATTACTTATATTTATTTTATAATTATAATTTCATTACTTTTTAATCATAGAAAAATTCTATACTTATTAGACCATTTTATACCCGTACAAGAATACTTAATTTTGGCAATTAAAAAGCTAAATATAATATTAACATTTTTGTAAAACTCAAAATTACTCATTAATAAATATTTAAACAAAAAATATTTAATTAAATTCTTACAAAAGTCTTCCACCTATCTTGTTGGAAAAGGAAAAAAAAAACTTTCAACCAGAGTGACACTGACACCACAGAACTGATATCAATTTGCATGCACACACTCACTCATGTTTATTTAATGTTTTCTTTTTCTTAGAATGAGTGAGAAGCTGAAACAGTGGCCCCACTAGTCTCATTCTCACATAAGAGAGCAAAAGAAGCATTGAACTTTTAAACAATGAAAACTCAAAATGTAAAACAAAAAGATCTCATTTAATTTGCTTGAATTTTTCTTTAAAACCTTGTCCTTTTTCTTCTGTTTCTGTGTCTTCCTTCTGACCACCATTTTTTCCTCTCTCTCCTTGCCATTTGATATTTTTGTGTTCTATCCTTAGATTCTTTTCTCACCCAACAAACTTTTAATGTTTTTCTTCACTCAGCATTGTGAAAGTTAGACCCTTTCAGCTTTTCTGCATCTTCAGTTTCA


Gene Sequence:
>Vu_17859(-)
ATGAGCGCTGAAATGAATGTTTTTCCTTCACCTCCGGTTACTGTTATTGGTCTCCAGTGTTTCAACGTTTTAGGGGTGATGGGTCATGTTGGAGACATGAAATCTGAAAGTTCTGATATACCTTTTCAGATTTTGAATCCCAAACGCGTGGAGGAAGAAGAATCTTCTGGGGTTGAAGCCACTGGCTTGTCTTTGAAACCTGGTGAAGAGCTTCAAGCTAATAGTTATCCTGCTAAAGGGAAAATCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGATCAGCTGAAGATGCCAAACTTAAAGAGTTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGTAAATGACAGTTCTGCTTTTTAGTGAACTACTATGTTTTGTGATAACAGAGTCTTTGTGCTGAATGGGTAATTGCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAAAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCAGGTAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAAAAGTCATGTGTCTGCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCAGTGAATGGATGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTTCCTCTTCAGCAAAATCAACTCCTCTGCCTTTTCTAAACCATTGTCAAGTTCAGAATCTCCAAACCTTTGGTGGTGCTCTAATGGGTATGATTTGCTCTTCCATGTAAATATTACAAACCATGAAAGATTTTAACTTTTACATTACAACTATTTGTATCACAAAATGTTTGCTTTGTATGACTCTAATTGAAGGGTCATTCACAGATATTATTAACATATAGGGACCACTTTACAACTGTCTGTATGAATTCAAGTGCCTTTCTTTTTCTTCTTTATTGTTACATGTTTAACATTTGTTTCTGTGGGGTTGCAGGTTTATCTGGGAAAAGCAGGACACCAGACAGGAATGTGAGTTTCAACAAGCATTTTGGTGCTGGGAAAGGTTCATCTGAGACTGGACACATGGGAAGGGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGAATCAGTTGCCACCAACAAGACTACCAATTTATCAATGTATGGGGAAAGTGATAAGAGGGCCAACATGTTATTCATTGATTTTCTTGGAGTAGGAACTACATAAAGAAAATGTTTGATTAGAATGAATGAATAATCTTCACTCAGAAAGACATTGATCCTAACAGAGGAAGAGGGAAGAGGAGTTTGGAATAGTGAGCAATTATGGTTGTGATGATGAAGAGAAATGGATCTGCCTTCATTCACGTGTGCAATTAGTCCCATTTATGGCCAAAGGTTAA