Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17857 LG4 41355252 41356110 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
A/T 41355288 missense_variant p.Thr13Ser
G/T 41355365 missense_variant p.Leu38Phe
G/A 41355415 stop_gained p.Trp55*
G/A 41355954 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17857.1
MGSQGGAVQEANTTTPLVRQGSLYNLTLDEVHNQIGNLGKPLGCMNLDELLKSVWSADMQDGQAASDSSLNPQGNVTLSRDLSRKTVDEVWRDMQLKKDEKTQKRNPTLGEMTLEDFLVKAGVVGDSNGGSLQHGHWMQYQHSSVQHQNMVGGYVTGHAIQQPFVLDASYSEPASVIGALSDTQTPCRKRLASGDVVEKTVERRHKRMIKNRESAARSRARRQAYTQELEIKVKQLEEENERLRRLNVCL*


CDS Sequence:
>Vu_17857.1
ATGGGATCTCAAGGTGGGGCAGTTCAAGAGGCAAACACTACTACCCCTTTGGTTAGGCAAGGATCCTTGTACAATCTGACCCTAGATGAGGTGCATAACCAGATTGGGAATTTGGGGAAGCCACTTGGCTGCATGAATCTTGATGAGCTGCTGAAGAGTGTGTGGAGTGCTGACATGCAGGATGGCCAAGCTGCTTCAGATTCCTCTCTGAATCCTCAGGGCAATGTAACTTTGTCAAGGGATCTTAGCAGGAAAACTGTTGATGAGGTGTGGAGAGATATGCAACTGAAGAAGGATGAGAAAACCCAGAAAAGAAATCCTACACTTGGTGAGATGACTCTGGAGGATTTCTTGGTGAAAGCTGGAGTGGTAGGTGATTCAAATGGAGGTTCCTTACAGCATGGTCATTGGATGCAATACCAGCATTCTTCAGTGCAGCATCAGAATATGGTTGGGGGTTATGTGACTGGCCATGCCATTCAGCAGCCTTTTGTTCTTGATGCATCATACTCTGAGCCAGCTTCTGTAATAGGAGCTTTATCTGATACACAAACTCCCTGTCGAAAAAGGCTTGCCTCTGGTGATGTGGTGGAGAAAACTGTGGAGAGGAGGCACAAGAGAATGATTAAAAATAGAGAATCTGCTGCTAGATCTCGGGCAAGAAGACAGGCATACACACAAGAACTGGAGATTAAAGTTAAGCAGTTAGAAGAGGAGAATGAAAGGCTTAGAAGACTGAATGTATGTTTGTAA


Promoter Sequence:
>Vu_17857::LG4:41353252-41355252(+)
ATTGCAATAATTAATAGCTAAAGTGAGATGTTAGAATAAAATTACTACTTTTAATCTTAAAACTTATTTAAAAATAGATAAATAGCATTCTATTTGGATTTTTTTGTTTTGTTTTAGAGATATAATATTAAATATAACACGACATTATTAAATTTATCTAAAATGATTTAATAATGTTACATTAGTCAAAATTGAGATTATGGTTAATATTGTAAGGTGTTCATAAATTCTAATAGTTGGATCGTCACACGAATTATAAATTTTACTTTTTATAATAAAAATGACAAATTATTAAAATAAAATTATTTCCTCCGTTAATACTTTATCAACTTAAGTTTATAGAAAACGAATTATGTATAAAAAATTCGTCATTTTTAATTATATTTAAAATTTATTTTAATTAAAATCTTATTTATCAGTTTGAATTTTATTTTAATTAAAATTTATTCAAGTTAAAGGGTGTAATTGAAAACTCCTTCAAATTTTAATTAGGTGTTAATTTTATTTTAATTAAAAGCCATTCACAGAAAAATTAGTGTTGTGCGTCTAAAAAAGTGAATTCAATATCAATAATAATTTTAATAGAGAGATGTTGAGATTGACAATACCAATAAGGTAAAATTTTAATTATATTAACTTTTAATTAGGTTAAATGCAGAAAAAAAAGATGAATTTTACTTAAATTTATTTTTAATTGGTATATATAACAATAAATTTTTAATTGTATTAAAGTTTAGTTAGATTTAGATTTTATTTAGATTTAATATATTCATATAAAAAAGTGAACATATAATGTATGTAAAAATAAAGATGATTTACACAATATTTATGGATTTATTTGATAATTCTAATAATTTTATTGTGTTATGATTATATGAAGGATCTGAAATACAAATATTGTTTCAAAGAGTAGAAAATACAACAAATTTTTTTTTTGAGAATTTTAAAATAAATAATACCTTTTTATAAATATAAAAACCATTTTTTAATTTTAATTAAAAATATTAAGGTAATAAAAATAAATATTAAAAAAATAATCTGAACGAATACATTGAGTCATCACCTTTTACCCACTCATCTTTATCATTTAACTATTATATTTTGTACAAGTAAAAAGAAAGAAAAAGACCGATGAGAGAGAAAAAGGCGGTGCTTCTTCCATTTAACAATGATACTAATTACTATTGTTTTTAAAATATTTCTTCTACCTTGCTTGGTGTGCACTGGAGTTCCCATTCCCAATGAAAAATTTGAAATGTCCATTTTTGTAGATTTTGGAGATTTCAAATTTGGTATGTAAGACTGTATAAGTAGGTGAAATATTAGTTAGTGAAAGTAATGTGACCCTCTTAAATTTTGGTTTTGTTCATAGCTCACAAAGTCAGAACTAGAACTAAATCATTTGAAATTCCAAATTTTTTACAAACTAATGAGTTTATCTTTATTATTTGAAGGAAGACAAGAAAACTCAATAACCCTTTTCTTCTGACATTGTAATGAGCAATGTTGTTTCAGTAGGGAGTGTTAATTTTTTATCACCATAAGGGGTTTCATTTGTGCTGAGATTTTGCAGGATCAAGTTTGGCCTTTTATTTCTTTAATGCACAGTGGTGACGATGATGATGATGGAAATAACATGCATGATGATTAGTTGATGGCTTTTATCTTTTGCTCTCAAGTGCCATCCTATGTTGGTGTGCGGACCATTTATAACATTGATTCCCTTGAAATCTGATCTGGCTTGTCTTTTTCATTTTCTTCAGGATCAATTTTCCCCCACCTCTTCACATTTGCTTGCTTTGTCTTTGTGGGTGCTTGTTATCAAATATCCATAGCTTAAAGAAACCGCCTTTTGGAATCAGCATTGGTTTTTTTCCTAGTTTTCTTTCTGGGTATTTTTCTGGGGGGAGGAGGAATACTAACCTGATATTGAAATGCTTTCTGGTGAGCTTTGGAGATGCATGGTATAGAATTGTAGGGTTGTGTTGGGGTTAAGAAAA


Gene Sequence:
>Vu_17857(+)
ATGGGATCTCAAGGTGGGGCAGTTCAAGAGGCAAACACTACTACCCCTTTGGTTAGGCAAGGATCCTTGTACAATCTGACCCTAGATGAGGTGCATAACCAGATTGGGAATTTGGGGAAGCCACTTGGCTGCATGAATCTTGATGAGCTGCTGAAGAGTGTGTGGAGTGCTGACATGCAGGATGGCCAAGCTGCTTCAGATTCCTCTCTGAATCCTCAGGGCAATGTAACTTTGTCAAGGGATCTTAGCAGGAAAACTGTTGATGAGGTGTGGAGAGATATGCAACTGAAGAAGGATGAGAAAACCCAGAAAAGAAATCCTACACTTGGTGAGATGACTCTGGAGGATTTCTTGGTGAAAGCTGGAGTGGTAGGTGATTCAAATGGAGGTTCCTTACAGCATGGTCATTGGATGCAATACCAGCATTCTTCAGTGCAGCATCAGAATATGGTTGGGGGTTATGTGACTGGCCATGCCATTCAGCAGCCTTTTGTTCTTGATGCATCATACTCTGAGCCAGCTTCTGTAATAGGAGCTTTATCTGATACACAAACTCCCTGTCGAAAAAGGCTTGCCTCTGGTGATGTGGTGGAGAAAACTGTGGAGAGGAGGCACAAGAGAATGATTAAAAATAGAGAATCTGCTGCTAGATCTCGGGCAAGAAGACAGGTTACATTGCATTTGTGTGTTTGAGTGTGTGTGGGATGTTATTCTTTGAAATCTGTTTTTTTTTCCTTCTAATTTGATACAAGGTGTCATCTATGCTCATGCACAGGCATACACACAAGAACTGGAGATTAAAGTTAAGCAGTTAGAAGAGGAGAATGAAAGGCTTAGAAGACTGAATGTATGTTTGTAA