Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17848 LG4 41215097 41216610 PREDICTED: mediator-associated protein 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, glucosinolate metabolic process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, glucosinolate metabolic process, glucosinolate metabolic process
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleolus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
G/C 41215132 3_prime_UTR_variant
C/A 41215183 3_prime_UTR_variant
C/G 41215224 3_prime_UTR_variant
C/T 41215464 synonymous_variant p.Leu355Leu
A/C 41215772 missense_variant p.Ser253Ala
G/T 41215794 missense_variant p.His245Gln
C/A 41215884 synonymous_variant p.Leu215Leu
C/T 41216021 missense_variant p.Glu170Lys
A/G 41216119 missense_variant p.Val137Ala
G/T 41216221 missense_variant p.Pro103His
G/T 41216222 missense_variant p.Pro103Thr
G/T 41216225 missense_variant p.Leu102Ile
T/C 41216330 missense_variant p.Ile67Val
A/T 41216376 synonymous_variant p.Ser51Ser
C/T 41216391 synonymous_variant p.Glu46Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17848.1
MTKKSKQRPAPVEDPSTASSSESEEDDDRPHSSQQHAAAPQVSSSEEEDDSSEEEDEKKLSTLPASINHPSKPHPKSYSSESEPDTDSEPARVKPKPKPTDLPQPKVQAQRSSTPVKPGSKRPAHVTEQKRAKKKPVEAPSPSVANDETEEDGKKSGGQARVLFQRIWSEEDELGILKGILEFISKTGQEPYRYVDAFHNFIKKSLHVEVSSHQLKEKIRRMKKKFETREAKKKKGIWPRLLRPHDRAVYELSKKIWGEWPNGLVEKPKPLAKYVTKTQKKESKAEDKVPSQPSAPLLALPAPESGDVSLLYSSISCFKELDEDEMKRGLTLIGESKRKELERRWKVLQYSEMELLANRSLLIGEQIKLVSEALQSSNN*


CDS Sequence:
>Vu_17848.1
ATGACAAAGAAGTCGAAGCAGCGCCCTGCACCGGTGGAAGATCCTTCAACTGCTTCCTCCTCCGAATCTGAGGAAGATGATGACCGACCGCATTCTTCTCAACAGCATGCAGCAGCACCACAGGTTTCTTCCTCTGAGGAGGAAGACGATTCTTCAGAAGAAGAAGACGAGAAGAAACTTTCCACTCTCCCTGCTTCTATAAACCATCCCTCCAAGCCTCACCCCAAGTCCTACTCATCTGAATCCGAACCCGACACTGACTCGGAACCAGCTCGAGTCAAACCCAAACCCAAGCCCACGGACCTACCCCAGCCCAAGGTCCAAGCCCAGCGTTCCTCCACGCCGGTGAAACCGGGATCCAAGCGCCCCGCCCACGTAACTGAGCAGAAACGCGCGAAAAAGAAACCAGTTGAGGCTCCTTCTCCCTCCGTTGCTAACGACGAGACAGAGGAGGACGGGAAGAAGTCCGGCGGGCAAGCGAGGGTGTTGTTCCAGAGGATCTGGAGCGAAGAAGACGAGCTCGGCATTCTTAAGGGCATACTTGAGTTCATCTCAAAGACCGGACAAGAGCCTTATAGGTACGTCGACGCTTTCCACAACTTCATTAAGAAGTCACTCCACGTGGAGGTTTCCAGCCATCAGCTGAAGGAGAAGATTCGACGGATGAAGAAGAAGTTCGAGACTCGTGAGGCGAAAAAGAAGAAAGGGATTTGGCCTCGGTTGTTGAGGCCTCACGACCGGGCCGTGTATGAATTATCCAAGAAGATTTGGGGTGAATGGCCCAACGGACTGGTGGAAAAGCCCAAGCCTCTTGCGAAATACGTTACCAAGACTCAAAAGAAGGAATCAAAAGCCGAGGACAAAGTTCCGTCGCAGCCATCAGCGCCGCTGCTGGCGTTGCCGGCGCCTGAAAGTGGTGACGTGAGTTTGCTTTACAGCAGTATTTCTTGTTTTAAAGAGCTGGATGAGGATGAGATGAAGAGAGGACTTACTTTGATTGGAGAATCCAAGAGGAAGGAATTGGAGAGAAGGTGGAAAGTGTTGCAATATTCTGAGATGGAGCTGCTTGCGAATCGCTCTCTACTGATTGGGGAGCAGATTAAGTTGGTATCTGAAGCCCTACAGTCATCCAACAATTAG


Promoter Sequence:
>Vu_17848::LG4:41216610-41218610(-)
AGATTGTTATCCCTTTATTTAAAACTTTTAAGTTTTAAATTCCTATAGCTTACTTATGTATTTTAGCATATGATATTATTATTTGTCTGTCAAGATCTTAATAATCCACGTAAACAAATGATAATGTAAGTGTGATAGAGAAGTAGTTGAGCTGGTTTGAGAGAGAAACTAAGATATGCAGTTAAATTTTATAGGCTTAATACCAATTTTGGTCCCAAATTTTGTCAGCTTTATTCAAAATGGTAACTTTTTTTACGTTCAATGTAATCCTAAAGATCGTAATTTGTGTTTAATTTAGTCTTTTTTGCAAATGTCGTTTAAATAGTTAACGACCAAATGTCCAACTCTACAATCAGTTAATGACATGTCATTTAACTGCTGACGTTGACAACACCTCACCACCATCAAACCCCACTCGACCCGTCGCCATGAAGCCCAAATACACCACCACTCTCCCTTCATTGCGGAGCACCGCCGCGACACTACCTCACCACCATCAACACGCACCTGCAGAGAAGAACCCAGAAACGCGACCCAACGACAGCAATGATAAGCCACTTCTTATTCGCAACACAAGCAACGCCTACCTTGCCACCAATGCCTCAAGTCGTCGCCGCCATCAACACCGCAAGACCTTAGTGCCGCCACCACCATGCGAACCCTAAAAAATTGTAGAGTCGCAAAACCAGTTCAAAACCTGCACACAAAATTGCGATCACGCGAGAAGCATCAACATCGCGCCTCCAATCATCGCCATCAAAACATCTTCATCTTCTCCATTCAATCGCAACCATGTCACGACACCATGTGCAAGCACAATGATCACCGTCATCAACCTCTCCACCATCTCGCTAGTCATAGCACCACCAAGCTTCTTCACATACCTGCAAATCCATCCCTAATTCGCACCGCAAGGAAGAACAGAGAAGAGGCGTATGAGATCCCTTTCCCTAATCTAAAACCCTAATTTTGGGTGGGTAAGGGGCTGACACATGAGAAGGCCTCATTGGCCACATCCACCTCACTACGCCTTAAATTGTCCACTCTAGTAGTTAAATGACATGTCATTTACGGATTGCACAATTGGACATTTGACTATTAACTATTTAAACGATGTTTACAAAAAGGACTAAATTAGACACAAATTACGATATTTAGGATTATATTGAACGTAAAAAAGAAATTAGGACCATTTCGAATAAAACTGACAAAAATTGGAACCAAAATTGGTATTAAGCCAATTTTATATAGTCAAAACTTAAACTTATATTTTAATGTATAGGTTTTGATCTCAACTCCTGTCTTTTTAAAATACTTATGATATTTTAATTCATAGTAAAATGATAATACATTACCTTGTAGATTTTATTTATATTCATGTTATAGAACTACCTAAATTATCTTTTATTACAATTTGGATAAAATACCATAATTGGATTGTTATATATAAAATTAAAATATAATTATACATAAAATAACAAACTTATCAGATACTATCTTTGTGATTTATAATAAATTTATTTTATGAGCGGAAGCAAATTTTATATCCCAATAAATAAAAGTAATATATCTATACCTTTTTATCAATATGTTCAATTAAATTAATATAAAACAATTTATTCTTATTTAATTTAATTTAGTTCTAAAATAAATTTTTAGATATATAGTGTTTCAAATAAAAGTACTCATAAGCTCATAGAAATAGACAAACATTTAAAAGAAGTAAGCAATGTAAAATCATTTGCATAAAACAAAATTCCAAAAAATCACAAAAGCGGTAAAATAAATAATGAAAGCAAAATAAGTAGAACAAAAATGAAAAAAAAAAACAAGAAAATGGAACATGTAATAATGATATAAAACAACAAAAACAAAGAAAAACCAGGAAGTAATAACTAAAAAGTTTTAGGTAAAGAAATAATAATATTTAATCTTATTTTTATTATTTATAAAAAGAATTAATTTTATTATATGTTTTGTGTTGGTTCTCTTGTTCCCGT


Gene Sequence:
>Vu_17848(-)
GTGTATAACCTGTCCACTTTTCTGTGTTGAGTTCTCTCTCACTGTCACTCCCCGCTAACCCTAAATTCCCAAATTTTCGACCATGACAAAGAAGTCGAAGCAGCGCCCTGCACCGGTGGAAGATCCTTCAACTGCTTCCTCCTCCGAATCTGAGGAAGATGATGACCGACCGCATTCTTCTCAACAGCATGCAGCAGCACCACAGGTTTCTTCCTCTGAGGAGGAAGACGATTCTTCAGAAGAAGAAGACGAGAAGAAACTTTCCACTCTCCCTGCTTCTATAAACCATCCCTCCAAGCCTCACCCCAAGTCCTACTCATCTGAATCCGAACCCGACACTGACTCGGAACCAGCTCGAGTCAAACCCAAACCCAAGCCCACGGACCTACCCCAGCCCAAGGTCCAAGCCCAGCGTTCCTCCACGCCGGTGAAACCGGGATCCAAGCGCCCCGCCCACGTAACTGAGCAGAAACGCGCGAAAAAGAAACCAGTTGAGGCTCCTTCTCCCTCCGTTGCTAACGACGAGACAGAGGAGGACGGGAAGAAGTCCGGCGGGCAAGCGAGGGTGTTGTTCCAGAGGATCTGGAGCGAAGAAGACGAGCTCGGCATTCTTAAGGGCATACTTGAGTTCATCTCAAAGACCGGACAAGAGCCTTATAGGTACGTCGACGCTTTCCACAACTTCATTAAGAAGTCACTCCACGTGGAGGTTTCCAGCCATCAGCTGAAGGAGAAGATTCGACGGATGAAGAAGAAGTTCGAGACTCGTGAGGCGAAAAAGAAGAAAGGGATTTGGCCTCGGTTGTTGAGGCCTCACGACCGGGCCGTGTATGAATTATCCAAGAAGATTTGGGGTGAATGGCCCAACGGACTGGTGGAAAAGCCCAAGCCTCTTGCGAAATACGTTACCAAGACTCAAAAGAAGGAATCAAAAGCCGAGGACAAAGTTCCGTCGCAGCCATCAGCGCCGCTGCTGGCGTTGCCGGCGCCTGAAAGTGGTGACGTGAGTTTGCTTTACAGCAGTATTTCTTGTTTTAAAGAGCTGGATGAGGATGAGATGAAGAGAGGACTTACTTTGATTGGAGAATCCAAGAGGAAGGAATTGGAGAGAAGGTGGAAAGTGTTGCAATATTCTGAGATGGAGCTGCTTGCGAATCGCTCTCTACTGATTGGGGAGCAGATTAAGTTGGTATCTGAAGCCCTACAGTCATCCAACAATTAGGATTCATTGTGTTAGGTATCGTTTATTGGTCCTTTGGTACTCTATGTATCATTCCTTTTGTGGATTATTGTAATTTTGGTGTATGTGGCATAGTCTTCTTTTGCTAAGTGTTGTGAAAACTTTCTGCACAGTCCATTGCCTGTTCTCTCTAACTCCAAAGTACAGACATTTACCGTTTTTATTGCTGGGTCTGTTTGTTTGTGCTGAAAAATGTTATTACATAAGAAGAGAAAGCGGGAAATTACTTTTGCTTTTTCAAAACAAGTTTAGCCCAATATGTAAAATTTTGCTG