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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17797 LG4 40390652 40391254 PREDICTED: basic leucine zipper 43-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 40390729 missense_variant p.Pro176Ala
A/G 40390733 synonymous_variant p.His174His
T/A 40390755 missense_variant p.Tyr167Phe
T/C 40390862 synonymous_variant p.Ser131Ser
G/T 40390981 synonymous_variant p.Arg92Arg
T/C 40390997 synonymous_variant p.Arg86Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17797.1
MQSREVSALNYLLPSNPSPYPPNNNFTTIQNNIPTFQFQRFSTQLYGHNHNTPYDFSPQSSCISSNSTSDEADEQQLTLINERKHRRMISNRESARRSRMRKQKHLDELWSQVMWLRNENHQLIDKLNHVSENHDQVLQENAQLKEEASELRQMIRDMQIHSPSPSYTPFQDHHVPCTSPYLRSDSSNQSNSCNNIDLLG*


CDS Sequence:
>Vu_17797.1
ATGCAAAGCAGGGAAGTCTCAGCCCTGAATTATTTACTCCCTTCAAACCCTTCTCCCTACCCTCCCAACAACAATTTCACAACCATCCAAAACAACATTCCCACATTCCAGTTCCAAAGATTCTCCACCCAATTATATGGCCACAACCACAACACCCCCTATGATTTCAGTCCTCAATCATCGTGCATCAGCAGCAACTCCACTTCTGATGAGGCTGATGAGCAGCAACTCACTCTCATCAACGAGAGGAAGCACAGAAGGATGATATCAAACCGAGAATCCGCACGTAGGTCACGGATGAGGAAGCAGAAGCACCTCGATGAGCTTTGGTCACAGGTCATGTGGCTCAGGAATGAGAACCACCAACTCATAGACAAACTCAACCATGTCTCAGAAAACCATGACCAAGTTCTCCAAGAAAATGCTCAGCTCAAAGAAGAAGCCTCTGAACTTCGCCAAATGATCAGGGACATGCAGATACACAGCCCTTCTCCCTCCTACACCCCTTTCCAAGATCACCATGTCCCTTGCACCTCACCGTATCTCAGATCCGATTCTTCAAACCAATCCAACTCCTGTAACAACATCGATCTCCTTGGCTGA


Promoter Sequence:
>Vu_17797::LG4:40391254-40393254(-)
TTGTCATTACCACAACCAAATAAATAGAGGTTGATTTGTACCAAGTACCTAACCCTACTAACCAAAAGTGAGTGAATATTGCTGATCAAACATTTGGCTTCTATTTAATCCATACACTTACAATTGTTTTTGGAGGCCCCATAATAAGTGCTTCTTGAGTCATCAAAATATTGTTAATTCCTTTATTCTTTCTTCATCCTTGTTTACCAATTTGGCAAGTCGTCAATTTATAAATGGGGCTTTCTTTATGGAAGTTAATTTAAATGTGGGTGGCCATTTATATTAAAGAAATCTCCAGAAATAGTCACAAAAGTATAATACAACGTTTGGTTTAGTATTTAATGACACTAAGATCTTTATTTTAAACAAAACTACTGTTTTTAAAATAAATGTGTATGACGATAATCACTTTCCTTAATTTTTGTCATGGTTAAAACTTATTATAGTATTATGAGAGTTTTTAGTTTCTTTTATCGTTCTTCTAGGATTTTCCAATTAAAATTCTAATTTTATCTCAATAATTATATCGATAATATTGATATAAATTATTAGAATTCCCTTTCTCTAATTAAAGTGTTTAAAAAGTAAAGTAACCAATTTTAGATGTTAATAAAAAATTATATATGTTAAGACCTTTTATCAATTAAGTTAATTTTACATTATATGAGTGGGATAATATCCTTATTTTATAAGTTAGATTTAGAAAAATAAGTTAAATTTAAATTCCCATATCAAAATCTACTTTGCAAAATTTATTGGATTTATTATTAAATCATCCATAGATATTTAGTTTAAGTATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGTGATGAACAAACAGTGGATTGATGAAAAACCATTTCCCCTTTTATTATGTGTGAATTAAAAAATTTCTCTTATCATTCCAACTTTTAGGTTTAACCATGGCTAAAACAAACATGTTTTTTGGTTTGATTTATTGGTTAATTAGTCCATGGAAGTCACCTTCAACAATTGTCTTTCCCAGCCTCGTTTTTCCACACCCTTTCTTACGTCATTTAATCAATTAGAGAATTATACGATCCATCATGGAACCTGTTTCGAATTAAATAATTAAGTTACTTTTTTAATTAAAAAAAAAATCCTGTTCTTGCTTTCACCAAACAGTCCTCCAATAGAGTTATTTAATTATACTTCCCATGATATGAAATACCTCTGTCTCTCTTAGGTAAGCATATTTTTTCTACAAAATGATTATATCCACACACCCAAGTTGCATCACCCCCCTTTGGGCCACTCATGTGCATCATACCATTCATCCATACCATGTCACAAACATCACATGTCATGCACATATACATGCTTACATGAGTTCAATGTTTAACAGAGAAAAGGAAAGAGAACGTGTATATATGATAACACGATTGCAATTAACATCATCTGCAGGGCGGAAATTTAATGTCTTCTGGTATGAATTAAGGTTTTACTTTGTCAGAAGTTTATATTAAAAGTCAGCATAGGTTACCAAAATAGAAGATTTAAGTAATTCTGTCTAAATTGTGCATTATAATATACACATCTTGTTGGTATATTCTTCTTAATAGTACTTATAAAATGGCTGCCATGTTTTACATAAACTAAATTTCACAGAAATTTGAACTTTCAAAGTAGACCATATGATAATAATGTTATATATATGAATCTGAAATGAAAACATTAGTATGGTACGTGAGAAAACATCCTTAGTGGTTGCATGATGATGTTGTTAAGATTGAACTAAAGACAATGCATGTTAATTCCATTCCATGAAATTAATGTAAGAAGTTACTCTACTGTGATGAAGTGGGGTCATTTCATCTTTTTCAGACCCTATATAATACCTACTCTTCCGACTCTTTCTTCCTCCTTCTCAAAACCAATTGCAGACTCTCTCCATCACTCTCTCAGAAACAAGGCTCTGCAACCCTTTTGCTAAACCAAAACC


Gene Sequence:
>Vu_17797(-)
ATGCAAAGCAGGGAAGTCTCAGCCCTGAATTATTTACTCCCTTCAAACCCTTCTCCCTACCCTCCCAACAACAATTTCACAACCATCCAAAACAACATTCCCACATTCCAGTTCCAAAGATTCTCCACCCAATTATATGGCCACAACCACAACACCCCCTATGATTTCAGTCCTCAATCATCGTGCATCAGCAGCAACTCCACTTCTGATGAGGCTGATGAGCAGCAACTCACTCTCATCAACGAGAGGAAGCACAGAAGGATGATATCAAACCGAGAATCCGCACGTAGGTCACGGATGAGGAAGCAGAAGCACCTCGATGAGCTTTGGTCACAGGTCATGTGGCTCAGGAATGAGAACCACCAACTCATAGACAAACTCAACCATGTCTCAGAAAACCATGACCAAGTTCTCCAAGAAAATGCTCAGCTCAAAGAAGAAGCCTCTGAACTTCGCCAAATGATCAGGGACATGCAGATACACAGCCCTTCTCCCTCCTACACCCCTTTCCAAGATCACCATGTCCCTTGCACCTCACCGTATCTCAGATCCGATTCTTCAAACCAATCCAACTCCTGTAACAACATCGATCTCCTTGGCTGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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