Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17790 LG4 40286076 40288138 PREDICTED: zinc finger protein CONSTANS-LIKE 2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 40286558 synonymous_variant p.Glu161Glu
T/C 40286579 synonymous_variant p.Asp168Asp
T/A 40286597 synonymous_variant p.Leu174Leu
T/A 40286780 synonymous_variant p.Ser235Ser
A/G 40286942 upstream_gene_variant
T/C 40286953 upstream_gene_variant
T/A 40287231 upstream_gene_variant
C/T 40287333 upstream_gene_variant
C/G 40287350 upstream_gene_variant
A/C 40287458 upstream_gene_variant
T/G 40287472 upstream_gene_variant
G/T 40287473 upstream_gene_variant
G/C 40287496 upstream_gene_variant
T/C 40287514 upstream_gene_variant
T/G 40287600 upstream_gene_variant
T/A 40287639 upstream_gene_variant
A/G 40287667 upstream_gene_variant
A/G 40287830 missense_variant p.Ile255Val
C/A 40287873 missense_variant p.Thr269Lys
G/T 40287931 missense_variant p.Glu288Asp
G/A 40287990 missense_variant p.Arg308Lys
G/A 40288094 missense_variant p.Ala343Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17790.1
MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCTSCDADIHSANPLASRHHRVPILPILGPLLVEPDHEPEHGFVNEVEEEEEEVFDEYDDEIEAASWLLPHPVKGNQEEENGFLYGDEYLDNLVDCNSCGHHNQFSNVFQQQQNYNTVPQNYAVVPVQVLQQLQHFQPGLEFDSSKAGFSYDGSISQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTALFNEVGGTIFPSF*


CDS Sequence:
>Vu_17790.1
ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTACTTCGTGTGATGCTGACATTCACTCAGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTTGGGTCCCCTCTTGGTGGAACCAGATCACGAACCGGAACATGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAAGTTTTCGATGAGTACGATGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACCAAGAGGAGGAGAATGGTTTTTTGTACGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTCACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATTGCAGCACTTTCAACCGGGTTTGGAATTTGACTCGTCAAAAGCTGGGTTCAGTTACGATGGTTCTATTAGCCAAAGCGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAGATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACCAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCACAGCACTCTTCAATGAAGTTGGAGGAACCATTTTCCCATCTTTCTAG


Promoter Sequence:
>Vu_17790::LG4:40284076-40286076(+)
TATAACTAATTACTTATCTTCACAGTGATTAAATCCTTACACAACCACTGAATTTACGAGAAGAGCATATATTAAGGAGTAACTTGAGATTTTGACTGTTGCATTGCATGCCTAGAGAATCTACTCTGGACCCAAATGTACACGTGTCTCCAAGTTGTGCCACCAACAGTATGAATAAAGGCCTCAACATCTCTTTAATGATTCCAAAAGGCAAAGAAGCAATATAAGACATCTCTTTAATGATTCCAAAACAAAACCCCATCTCCTATTATTTTAGTAAGGAAATCGTTAGCACTTTTTCTAAGTGTTTGGTACAGTAGTTGTATAGGGAAAGATTTATACTTGAAACTAGGGCTTTCTTACCAAAATAGGCAAAAATGGATCATATATTACGAGAATAGGTAAATTCAATTCAAATTACCAAAATGGAAAAGTCGTGGGGGGCCAAAACAACTTCAAATGAAGAAGTCGTGCCCCCTGCATGACTTTATACTGTTCATTTGACCAGCGGTGAAGTTGTGCACCCCAAAAACGACTTTTGGGTCCTGTAATCGATTACAAGATCCTGTAATCGATTACACAATGTTGAAATCGTGACCCCCTTACACGACTTCAGTGTAGTAAGCAAAAATGATACTGGTAATCGATTACGACACTTAATCGATTACCAATGTTTTGAGTGTGCAAGAACCACCCTGGTAAGCGATTACAAGTTTGTTGTAATTGATTACCAGTGTGTTTTGGTTGGTTTACGAAAATTTCTATTGTGTTATAAAACATTATTTGAAGTTAATTATGTGTAATGATTTGAATATTTGTAAGTACACATTGTTGTTGATGACATTGTGATCTATTGTTATGTATAGGAAGAGTAATTAATTTAATGTAAATAGAACAAAGAAAGTAAAATCATAAGACAAAATCATAAATGAAATTTGTAGTCTTTTATTGAATTCAAAATGCATTACAAAAGCAAGAAGCTTAAATAAAAAAAACGAATATCTTCCTAGATATTGCTTTTGTAATGCATTTTGAATTCAATAAAAGACTACAAATTTCATTTATGATTTTGTCTTATGATTTTACTTTCTTTGTTCAATTTACATTAAATTAATTACTCTTCCTATACATAGATCACAGTGTCATCAACAACAATGTGCTTACAAATATTCAAATCATTACACATAATTAACTTCAAATAATGCTTTACAACACAATAGAAATTTTCATAAACCAACCAAAATACATTGGTAATCGATTACAACAAGCTTGTAATCGCTTACCAGGGTGGTTCTTGCACACTTAAAACACTGATAATCGATTACAAAAGTGTCGTAATCGATTACCAGTATCATTTTTGCCTACTACACTGAAGTCGTGCAGGGGGGTCACGATTTCAACATTGTGTAATCGATTACAGGATCTTGTAATCGATTACACGACCCAGAAGTCGTTTTTGGGGTGCACGACTTCACCACTAGTCAAATGAACAGTGTGAAGTCGTGTAGGGGAGCACGACTTCTTCATTTGAAGTCGTTTTGGCCCCCACGATTTTATATTTGGTAAAAATTTGCCCATTTAAGTAATATGCTAAGCAAATATGCCTAGTTTAGTGCAAAAGCCTGAAACAACTAGTAATTATTAAACTGAAAAAACTGGATTTTTCCATTATGTGTATATATCTAAAGTTGATACTTTGGTAACACTGATTACACTGAAAACAATCAAAACCTATTGTCCTTGCTTTTGGTAACCCTGAAACACAAGAAACCACTAGATAAGCAAGAACTTTTGCAGGCCACTAACTTTCTGCCACGATGGCACTCTTGATTCTCCTCCAACACTACTTGGTTCAGCTCACTGAACTCAAACCTTCACACTCACTCACTTCACTTCACTTCACTTCCCTTCTTTCTCCAAAACACACAAATAAACATACACAGAAACCAACCAAGTACAAACACTACTCCACCCCTCATACAATATTTCCACAGACAACA


Gene Sequence:
>Vu_17790(+)
ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTACTTCGTGTGATGCTGACATTCACTCAGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTTGGGTCCCCTCTTGGTGGAACCAGATCACGAACCGGAACATGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAAGTTTTCGATGAGTACGATGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACCAAGAGGAGGAGAATGGTTTTTTGTACGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTCACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATTGCAGCACTTTCAACCGGGTTTGGAATTTGACTCGTCAAAAGCTGGGTTCAGTTACGATGGTTCTATTAGCCAAAGCGTAAGGATCTTCCTCTTACTTCTTCTAACAACGGCTTTTTGAATTCTACTTTTTCTTCTTCCAAACTCTTTATTCATCAATTGAATTGTACTCTATCAGATTTTTGCTTAACCTGTGTTCACTCTTCCTTCCCAACTACCAATTTCTTTACTTTTTCCTTTCGTTTCAGAAAAGGTCTTAAATTGCAGTAGCACTCTTTATGGTAGTTTTCTCCCAATTTATGAGGATCAAACATTGTTGATACGATTTTAGGTTCAGTCAAGAAAAGTCTGAAAGATGTTGTAGTCGAAATTTCACTCACAAAGTGATTTTTAAATTTAAAACCTTTGGAACCAAAGTGGGATTTAGAAGCAGTAACTACAGTAGTTCCTTTCCCGTGTTACTCTTATTCATTTCAAAATGTTTCTTATTTCTTTGACTACCCTTTTTCGTTCACTTTTCTGTCTCTGAATGATATCTTTTTGTCGTAAACATAAGTTTTACCCTTTTTAATGTTTCTTGTATTAGCTAGCTAGTTCTAGCTGCGATTCCTTATAAACACATACTTTAAAGGGTAACTTTTTTCACCAATTTTCATCCCTAAACTTTGTTTTCCATCTCATTTTAACACAATTTCATCAATTGTGTGTTAAATTCCCTTAATTCTGAAGCTTCAACACAAAATAAGAGCCTGAGAGCCTGTTTTCTCAAAGCAAAAAAATTGGTGGGGGCATTAATCTGTTGACACCTTTCTTTTATACTTTTTCTCTTTTGCATTTCTTTTCTTTTGTATTTTCTCCTTTCTTTCTGTCATATATCCATTACATCTCTCAATTTTTCTTTCATACCTTTCGTTTTTGTCGTATTTTTTTTTCTTCTGAGATGTGAAACCAACAACAGTTTCACAAAAATGGTTAGCCATGAGCAATCAGTTTACAAAATTTGTGACTAACATCCCTTTTGTTATTGTTACACTTTGTGCTTTATAATAACCTTTGTTGTTGTTAATCCAGGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAGATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACCAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCACAGCACTCTTCAATGAAGTTGGAGGAACCATTTTCCCATCTTTCTAG