Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_17680	LG4	38886550	38888925	PREDICTED: receptor-like protein kinase FERONIA	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/G	38886570	missense_variant	p.Asn786His
C/T	38886573	missense_variant	p.Ala785Thr
T/G	38886578	missense_variant	p.Asp783Ala
T/C	38886598	synonymous_variant	p.Glu776Glu
G/A	38886603	stop_gained	p.Gln775*
C/T,A	38886607	missense_variant	p.Gln773His
T/A	38886608	missense_variant	p.Gln773Leu
A/C	38886613	synonymous_variant	p.Thr771Thr
A/G	38886648	missense_variant	p.Ser760Pro
G/C	38886649	synonymous_variant	p.Pro759Pro
C/T	38886652	synonymous_variant	p.Arg758Arg
C/T	38886673	synonymous_variant	p.Leu751Leu
A/G	38886694	synonymous_variant	p.Cys744Cys
C/T	38886712	synonymous_variant	p.Glu738Glu
G/A	38886716	missense_variant	p.Ala737Val
A/T	38886734	stop_gained	p.Leu731*
C/G	38886737	missense_variant	p.Arg730Thr
C/T	38886742	synonymous_variant	p.Glu728Glu
C/T	38886771	missense_variant	p.Glu719Lys
G/A	38886780	missense_variant	p.His716Tyr
C/T	38886782	missense_variant	p.Arg715Lys
A/C	38886790	missense_variant	p.Asn712Lys
G/A	38886818	missense_variant	p.Ala703Val
C/T	38886862	synonymous_variant	p.Val688Val
G/T	38886907	synonymous_variant	p.Arg673Arg
C/G	38886919	missense_variant	p.Glu669Asp
T/C	38886949	synonymous_variant	p.Val659Val
G/T	38886952	missense_variant	p.Asp658Glu
G/C	38886968	missense_variant	p.Ala653Gly
C/G	38886969	missense_variant	p.Ala653Pro
A/G	38886987	missense_variant	p.Ser647Pro
T/C	38886988	synonymous_variant	p.Gly646Gly
T/C	38887023	missense_variant	p.Thr635Ala
G/A	38887036	synonymous_variant	p.Asp630Asp
C/T	38887039	synonymous_variant	p.Leu629Leu
G/A	38887052	missense_variant	p.Thr625Met
C/A	38887067	missense_variant	p.Arg620Leu
T/G	38887156	synonymous_variant	p.Ile590Ile
A/G	38887159	synonymous_variant	p.Ala589Ala
A/G	38887168	synonymous_variant	p.Asp586Asp
T/C	38887207	missense_variant	p.Ile573Met
A/T	38887263	missense_variant	p.Ser555Thr
G/A	38887267	synonymous_variant	p.Val553Val
C/G	38887269	missense_variant	p.Val553Leu
A/G	38887312	synonymous_variant	p.Phe538Phe
G/A	38887322	missense_variant	p.Ala535Val
C/A	38887339	synonymous_variant	p.Pro529Pro
C/G	38887396	synonymous_variant	p.Val510Val
G/A,C	38887415	missense_variant	p.Thr504Ile
T/C	38887416	missense_variant	p.Thr504Ala
T/A	38887445	missense_variant	p.Gln494Leu
G/T	38887466	missense_variant	p.Ala487Asp
A/T,G	38887470	missense_variant	p.Phe486Leu
G/A	38887480	synonymous_variant	p.Arg482Arg
T/A	38887492	synonymous_variant	p.Thr478Thr
A/G	38887502	missense_variant	p.Phe475Ser
C/G	38887510	synonymous_variant	p.Thr472Thr
A/G	38887560	missense_variant	p.Tyr456His
C/A	38887591	missense_variant	p.Leu445Phe
A/G	38887599	synonymous_variant	p.Leu443Leu
C/T	38887602	missense_variant	p.Val442Ile
C/T	38887608	missense_variant	p.Gly440Ser
C/A	38887623	missense_variant	p.Ala435Ser
T/C	38887667	missense_variant	p.Gln420Arg
T/C	38887702	synonymous_variant	p.Ser408Ser
G/A	38887705	synonymous_variant	p.Asn407Asn
T/C	38887707	missense_variant	p.Asn407Asp
G/A	38887708	synonymous_variant	p.Ser406Ser
A/C	38887815	missense_variant	p.Ser371Ala
C/T	38887817	missense_variant	p.Gly370Asp
G/T,*	38887824	missense_variant	p.Gln368Lys
A/C	38887831	missense_variant	p.Phe365Leu
C/T	38887836	missense_variant	p.Val364Ile
G/A	38887837	synonymous_variant	p.Ala363Ala
A/G	38887843	synonymous_variant	p.Asn361Asn
A/G	38887856	missense_variant	p.Val357Ala
T/A	38887882	missense_variant	p.Lys348Asn
T/A	38887883	missense_variant	p.Lys348Ile
T/C	38887884	missense_variant	p.Lys348Glu
G/T	38887899	missense_variant	p.Arg343Ser
A/G	38887901	missense_variant	p.Val342Ala
C/G	38887902	missense_variant	p.Val342Leu
C/T	38887946	missense_variant	p.Gly327Asp
C/G	38887947	missense_variant	p.Gly327Arg
A/G	38887957	synonymous_variant	p.Ile323Ile
A/T,G	38887962	missense_variant	p.Tyr322His
G/A	38887963	synonymous_variant	p.Pro321Pro
G/A	38887981	synonymous_variant	p.His315His
G/C	38887992	missense_variant	p.Leu312Val
T/A	38888024	missense_variant	p.Glu301Val
C/G	38888039	missense_variant	p.Ser296Thr
T/A	38888040	missense_variant	p.Ser296Cys
C/T	38888045	missense_variant	p.Arg294Lys
G/A	38888047	synonymous_variant	p.Asn293Asn
A/T	38888061	missense_variant	p.Tyr289Asn
T/C	38888085	missense_variant	p.Arg281Gly
A/C	38888089	synonymous_variant	p.Leu279Leu
C/A	38888106	missense_variant	p.Val274Leu
T/C	38888129	missense_variant	p.Asn266Ser
T/G	38888145	missense_variant	p.Met261Leu
A/G	38888153	missense_variant	p.Leu258Pro
C/T	38888169	missense_variant	p.Glu253Lys
T/C	38888177	missense_variant	p.Tyr250Cys
A/T	38888178	missense_variant	p.Tyr250Asn
G/C	38888182	missense_variant	p.Ile248Met
G/T	38888201	missense_variant	p.Ala242Asp
C/T	38888202	missense_variant	p.Ala242Thr
A/G	38888203	synonymous_variant	p.Ala241Ala
A/G	38888240	missense_variant	p.Leu229Ser
G/A	38888310	synonymous_variant	p.Leu206Leu
G/A	38888312	missense_variant	p.Thr205Ile
C/G	38888315	missense_variant	p.Ser204Thr
A/G	38888318	missense_variant	p.Ile203Thr
T/C	38888325	missense_variant	p.Ile201Val
G/C	38888326	missense_variant	p.Asn200Lys
T/C	38888338	synonymous_variant	p.Thr196Thr
G/C	38888341	missense_variant	p.Asp195Glu
G/T	38888352	missense_variant	p.Pro192Thr
G/A	38888354	missense_variant	p.Thr191Ile
T/A	38888362	missense_variant	p.Leu188Phe
T/C	38888370	missense_variant	p.Thr186Ala
G/A	38888405	missense_variant	p.Ala174Val
G/A	38888410	synonymous_variant	p.Ser172Ser
G/A	38888419	synonymous_variant	p.His169His
C/G	38888422	synonymous_variant	p.Ser168Ser
G/T	38888425	synonymous_variant	p.Pro167Pro
G/A	38888455	synonymous_variant	p.Asp157Asp
G/C	38888470	synonymous_variant	p.Val152Val
G/A	38888473	synonymous_variant	p.Tyr151Tyr
A/G	38888485	synonymous_variant	p.Val147Val
C/T	38888487	missense_variant	p.Val147Ile
G/A	38888594	missense_variant	p.Ser111Phe
C/G	38888601	missense_variant	p.Asp109His
A/T	38888741	missense_variant	p.Val62Asp
G/T	38888892	missense_variant	p.Leu12Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_17680.1

MAITTSLKLFFLLLHFSTRLQAYTSEEVFTINCGTTGKSSDGQRTWTGDEDTKYLTFQDTTVSDKAITQSPSANQVPFSTARLSRSQFNYSFPVSPGSKFLRLFFYPADYSFFPRTQASFHVQSNQFTLLNAFNASLNTDAQATDTVFREYVVNVNDGERLILTFTPSHPNSYAFINGIEVLSMPTDLYYTPENDTGFTNIGISTLYSVGTSFALQTEYRIKAGGQEILPYNDSGLFRDWAAEERYFIKYNPENDDLLADMDGKMNITVNPDYVAPKELFRTARSMGRYATLNRMSNLTWEFPVDCGFTYVLRLHFCELDPYINDIGDRQFYIYIASQLAEVRADVMKWSQKQKGLVVHKNYAVFIPQNGSQKKFNLSLQMQPDGSNVDSKYANALLNGLEIFKISNSNNLAGPNPDPVQTPQNNIPGQNGKTIAGVLSGVVLILIIVFLVVFLRYKRNTYTKSRDCESKSTTIFLPTDLCRRFSFAEMRAATQNFDEVLIVGTGGFGQVYKGYIDEGSVPVAIKRLKPDSQQGAREFLNEIKMLSQLRHLNVVSLIGYCNDNKEMILVYDFITRGNLRDHLYNTDNPAISWKQRLQICIGAARGLHYLHTGAKHTIIHRDVKSTNILLDDKWVTKVSDFGLSRLGSIGTSKAHVSTDVRGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCGRPPLIHSAEKQQVSLSNWVRHCYESGMIAEIVEPRLKKEIAAECLKKFCEIGMSCLVEDGSLRPSMEDVAGMLEFTLQLQESAEQREDVANVVIVN*

CDS Sequence:
>Vu_17680.1

ATGGCTATCACCACCTCCTTAAAACTCTTTTTCCTCCTACTACACTTCTCCACACGCCTCCAAGCCTACACCTCAGAGGAAGTATTTACCATCAATTGCGGCACAACCGGAAAGTCCTCTGATGGTCAAAGAACGTGGACCGGTGACGAAGACACAAAGTACTTAACTTTCCAAGACACCACCGTTTCAGACAAGGCGATAACACAGTCTCCTTCAGCCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCCCGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCTCCAAATTCCTTCGCCTCTTCTTCTATCCTGCTGACTACTCCTTCTTTCCCCGCACTCAAGCATCTTTCCACGTTCAATCCAATCAATTCACTCTCCTCAACGCTTTCAACGCCTCTCTTAACACCGACGCTCAAGCCACCGACACTGTTTTCAGAGAATACGTCGTCAACGTCAACGACGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGCACCCAAACTCCTACGCTTTCATCAATGGAATCGAGGTGCTTTCCATGCCAACCGATTTATATTACACACCAGAAAATGACACAGGCTTCACGAACATCGGGATTAGCACCCTGTACAGTGTTGGAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAGCCGGAGGACAAGAAATCTTGCCATATAACGACAGCGGTTTGTTCAGGGATTGGGCTGCCGAAGAACGTTACTTTATCAAATACAATCCAGAGAATGATGATCTACTAGCTGACATGGATGGGAAAATGAACATAACCGTGAATCCCGATTACGTGGCACCAAAGGAACTTTTCAGAACAGCGCGTAGCATGGGCAGATACGCCACTCTGAACAGAATGAGCAACCTCACTTGGGAGTTCCCCGTTGATTGTGGCTTCACTTACGTTCTCAGACTCCACTTCTGCGAGCTTGATCCCTATATTAATGACATCGGTGACAGGCAGTTCTATATTTACATAGCGAGCCAGTTGGCTGAAGTACGTGCAGATGTAATGAAATGGAGTCAGAAACAAAAAGGTCTAGTTGTGCATAAAAATTATGCCGTTTTTATTCCCCAGAATGGTTCTCAGAAAAAGTTTAATCTCTCTCTTCAAATGCAGCCTGACGGAAGCAACGTGGATTCTAAATACGCAAACGCCTTACTTAACGGTCTCGAGATCTTCAAAATCAGCAACTCAAACAACCTAGCTGGTCCAAACCCAGATCCGGTTCAGACTCCACAGAACAACATTCCAGGCCAAAACGGAAAGACCATAGCAGGGGTGCTGTCTGGCGTCGTTTTGATCTTGATAATCGTTTTCCTTGTAGTGTTTTTACGATACAAGAGAAACACTTATACTAAGAGCAGGGATTGCGAATCCAAGTCAACGACCATCTTCCTGCCGACAGATCTCTGCCGCCGCTTCTCCTTCGCCGAGATGAGAGCGGCCACCCAAAACTTCGACGAAGTCTTGATCGTCGGCACCGGGGGATTCGGCCAAGTGTACAAGGGCTATATCGACGAGGGCTCCGTTCCCGTAGCCATCAAGCGCCTTAAACCGGATTCGCAGCAAGGGGCTCGCGAGTTTCTGAACGAAATTAAGATGCTCTCACAACTTCGCCACCTCAATGTCGTGTCCCTCATCGGCTACTGCAACGATAATAAGGAAATGATCTTGGTCTACGATTTCATAACACGTGGCAACCTCCGTGACCATCTATACAACACGGATAACCCAGCTATATCGTGGAAGCAGCGGTTGCAGATCTGCATCGGCGCGGCGCGTGGACTTCATTATCTTCACACAGGCGCGAAGCACACGATCATTCACCGGGACGTGAAAAGCACGAACATCCTGTTGGACGATAAGTGGGTGACCAAGGTTTCGGACTTTGGACTTTCCAGGCTTGGATCCATTGGAACTTCGAAGGCTCACGTCAGCACCGACGTAAGGGGAAGCTTCGGATATTTGGATCCTGAGTATTATAAACGCTATCGTTTGACGGAGAAGTCTGACGTGTACTCTTTCGGAGTTGTGCTTTTTGAGATACTGTGTGGTCGTCCCCCTTTGATTCACAGTGCGGAGAAGCAACAGGTGTCGCTCTCTAATTGGGTGAGACATTGTTACGAAAGTGGAATGATAGCAGAGATTGTTGAGCCGAGGTTGAAGAAGGAGATTGCAGCAGAGTGCTTGAAGAAGTTTTGTGAGATTGGGATGAGTTGTTTGGTGGAAGATGGGTCGCTGAGGCCCTCCATGGAGGATGTGGCTGGGATGTTGGAGTTTACTCTGCAGCTACAAGAAAGTGCAGAGCAACGTGAAGACGTGGCTAATGTTGTTATTGTTAACTGA

Promoter Sequence:
>Vu_17680::LG4:38888925-38890925(-)

TGTTATGTTTTCTTTTTAAAAGTTGAAACTTAAAAAAAAACACACATAATTAATATATATATATATATATATATATATATATATATATATTTATTATGTGAATAAATTTTTATTCTAAAGATTGATGAGTTGAAAATATATTTTATATTACTTTCATAAATTGTAAAAATATAATAATTTATAATTTATAATTTAATTTATAAACAAACATAATATTTTATAATAATTTGAAAATAAAAAATATATTTAACTCATAAAACATTAATTAAGAAAATGAGTTTTATAAGACTATTTTACTGTAATAAAAGTGATACAAAATTTAAAAGTTGTAAAACGTTGAATTATAAGAATAAAAAACAATTCCTTCCTAACAAGAGTATCTTTTTCAACAACAAAATAAAATATTAATTAGAAAAATAATAGTCTAATAAAACTCCTACATTACATAAAAAAAGTAATAAAAAAATATATTAAAATTGACGTGGCACAATAAAATCCACTAAAAATACATTAAAGCTTATTAATGAGAATTTTACTATTTCAATATCACTTTTAAGATTATTGGTTAGCAACTTTTACTCTAATATAAGGATTCTTACAAGGCTCATACACAATCCATTCCTTTAATTTGGATTAATGACAAAACTTATGTTTTCAAGATAGAGCTTTTTTTATTGAGTAAATATTACTGTTATATTAGGTGTATATCTATATTATTTAGTCATTATTATAAAATTAAATATGTTTTTTTTATTAAATTATTTTTAAGAATGCGTTTCATCCTTAAAATAAATTTATCATTTTTTTACTTTAGGCCTTTTTTGGTTCCTCGAAAGGGAAAAAATGTTCAATTGCGTCTTACGTTTTTAAAAAGGGTTCCAACTTTTGAAAAAACGGTTCAATTTAATCCTTTTTGGTCACGGCATTAATTTTTTAACAGTGCAGTTGATAGCGTGGACAAAACATAATTACGTGTCTAGTTTATGTCATTACGTGACAGTGACGTGTAAAATTTAAATTTAAAAAAAATATTTTGACAAAGGATAGGGCTGCTTGCTTGCGTTGAAGATGGGCCCAAACCCCTCTTAGGGTTTCCTCCGTGAGAATGAGCAAGAGAAGGGAGGCCTTTAGGAGGTGGCAAGGTGACCAGTCGCGAGCTAAGGTGTTGGCCGTTTGGCCTCCCGAGAAGAACGAGAAGCAGGCTGGAGACACCATGTCTCCGGCGACGACCACGATGATGAACGACATCGACGACGGAAGCTCCGAATGGCCGGAGGCAAGCGACGACGAGACCCGAAGCCTGGTGTTGGCTGCTTACGCAAGGAGATGGTGAAACTGTGATGACGCAAGGGTTTGGGGTCGTGGCCACACGAGTTACAACAGTGTGTTGGCGACGGTAAGCTTGGTGGTGAGCGACAGCGGTGGGAGCTTCACGGTTGCGGTGGAGACAGGATGGGGGTTGGGATGGCTAGTTTAGAGTTTGTAGACTAAGTGAAAATTGGAAGATTGGAGATGTATTCTTGGGTTGAATGTACTGAATTTGAGATTGAAGATCACGAGTTGGTATCTTGATGTTGGGTATCTATTAGTATTGAAAGAGATTAAGAATGAACTTGATGCATTATGTAGGATGAGTAGGATAAAGCGTGAAGTTGAATCTAAATGGATATGATGAAAGTCATCCCTCGCGACCTCATCGCGAATAACAAAGTCATCTCTCTCGCAAAAAATCACCCAAGTAAGATTCAGTCTTCCATCAACATCTCTATGTTTTACCCTTTCTGATCTTTTTAAATTTTGTTTTCTCTCTCCAATAAATTTTTTTGTGTTTTGCTTTTTCTTTTTTGTCTAGAAGAAGAACCCGTCAACTGCATAGACTCGCAGTGATATTTCGCTAACAAACACACTGCATGTTCCTTACTCCCGGCTTCCCAGCAATTCCATCCAAACAATGATGATAAAGTCTTCGCCCTTTCACTCACTTCTATTCTCACCCTGCC

Gene Sequence:

>Vu_17680(-)