Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_17679	LG4	38880071	38882473	receptor-like protein kinase FERONIA	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T	38880229	missense_variant	p.Cys749Ser
C/G	38880242	missense_variant	p.Glu744Asp
C/T,G	38880257	synonymous_variant	p.Pro739Pro
A/G	38880266	synonymous_variant	p.Ile736Ile
C/A	38880269	missense_variant	p.Glu735Asp
G/A	38880352	missense_variant	p.Pro708Ser
C/T	38880386	synonymous_variant	p.Gly696Gly
A/T	38880547	missense_variant	p.Trp643Arg
C/G,*	38880638	synonymous_variant	p.Ala612Ala
C/T	38880688	missense_variant	p.Asp596Asn
A/G	38880808	missense_variant	p.Ser556Pro
G/A	38880911	synonymous_variant	p.Tyr521Tyr
C/G	38880917	missense_variant	p.Gln519His
T/A	38880934	missense_variant	p.Thr514Ser
G/T	38881068	missense_variant	p.Thr469Asn
A/G	38881128	missense_variant	p.Val449Ala
T/C	38881238	synonymous_variant	p.Pro412Pro
C/T	38881257	missense_variant	p.Ser406Asn
G/C	38881273	missense_variant	p.Gln401Glu
T/C	38881315	missense_variant	p.Ser387Gly
G/T	38881332	missense_variant	p.Ser381Tyr
G/T	38881345	missense_variant	p.Gln377Lys
G/C	38881349	synonymous_variant	p.Ser375Ser
C/T	38881361	synonymous_variant	p.Lys371Lys
G/A	38881371	missense_variant	p.Thr368Ile
A/T	38881377	missense_variant	p.Ile366Asn
A/T	38881379	missense_variant	p.Asn365Lys
C/T	38881388	synonymous_variant	p.Leu362Leu
A/G	38881397	synonymous_variant	p.Tyr359Tyr
A/G	38881400	synonymous_variant	p.Asn358Asn
G/A	38881408	missense_variant	p.His356Tyr
C/T	38881414	missense_variant	p.Ala354Thr
A/T	38881418	synonymous_variant	p.Gly352Gly
C/A	38881420	missense_variant	p.Gly352Cys
G/T	38881426	missense_variant	p.Gln350Lys
C/T	38881450	missense_variant	p.Asp342Asn
G/A	38881452	missense_variant	p.Ala341Val
G/C	38881459	missense_variant	p.Pro339Ala
G/A	38881476	missense_variant	p.Ala333Val
G/A	38881532	synonymous_variant	p.Cys314Cys
G/T	38881535	missense_variant	p.Phe313Leu
G/A	38881559	synonymous_variant	p.Phe305Phe
T/G	38881595	missense_variant	p.Arg293Ser
C/T	38881601	synonymous_variant	p.Arg291Arg
A/C	38881607	missense_variant	p.Phe289Leu
A/G	38881609	missense_variant	p.Phe289Leu
G/T	38881611	missense_variant	p.Thr288Asn
C/T	38881615	missense_variant	p.Ala287Thr
G/C	38881620	missense_variant	p.Thr285Arg
C/A	38881634	synonymous_variant	p.Ala280Ala
C/T	38881636	missense_variant	p.Ala280Thr
C/G	38881641	missense_variant	p.Arg278Thr
A/C	38881669	missense_variant	p.Tyr269Asp
C/T	38881688	missense_variant	p.Met262Ile
T/C	38881693	missense_variant	p.Asn261Asp
C/T	38881695	missense_variant	p.Ser260Asn
T/C	38881698	missense_variant	p.Tyr259Cys
C/T	38881702	missense_variant	p.Asp258Asn
T/C	38881705	missense_variant	p.Thr257Ala
C/T	38881711	missense_variant	p.Val255Ile
C/T	38881714	missense_variant	p.Asp254Asn
C/T	38881718	synonymous_variant	p.Leu252Leu
G/C	38881721	missense_variant	p.His251Gln
G/A	38881723	missense_variant	p.His251Tyr
C/T	38881735	missense_variant	p.Glu247Lys
G/C	38881747	missense_variant	p.Pro243Ala
C/T	38881753	missense_variant	p.Glu241Lys
T/C	38881765	missense_variant	p.Asn237Asp
C/T	38881776	missense_variant	p.Gly233Asp
A/T	38881816	missense_variant	p.Ser220Thr
C/G	38881824	missense_variant	p.Arg217Thr
G/A	38881850	synonymous_variant	p.Thr208Thr
C/T	38881860	missense_variant	p.Ser205Asn
T/A	38881870	missense_variant	p.Thr202Ser
T/G,C	38881876	missense_variant	p.Ser200Gly
C/T	38881879	missense_variant	p.Glu199Lys
C/G,T	38881882	missense_variant	p.Val198Leu
G/A	38881887	missense_variant	p.Thr196Met
C/G	38881889	missense_variant	p.Leu195Phe
T/G	38881897	missense_variant	p.Thr193Pro
G/A	38881908	missense_variant	p.Pro189Leu
T/A	38881914	missense_variant	p.Tyr187Phe
T/C	38881940	synonymous_variant	p.Val178Val
G/T	38881949	synonymous_variant	p.Gly175Gly
A/G	38881962	missense_variant	p.Val171Ala
G/A	38881967	synonymous_variant	p.Ser169Ser
T/C	38881977	missense_variant	p.Asn166Ser
T/G	38881978	missense_variant	p.Asn166His
T/G,A	38882012	missense_variant	p.Glu154Asp
G/A	38882030	synonymous_variant	p.Tyr148Tyr
C/T	38882036	synonymous_variant	p.Lys146Lys
T/C	38882037	missense_variant	p.Lys146Arg
G/T	38882046	missense_variant	p.Thr143Asn
C/G	38882051	missense_variant	p.Met141Ile
A/G	38882052	missense_variant	p.Met141Thr
G/T	38882055	missense_variant	p.Ala140Asp
C/T	38882065	missense_variant	p.Asp137Asn
G/A	38882067	missense_variant	p.Ala136Val
G/A	38882100	missense_variant	p.Thr125Ile
G/T	38882107	missense_variant	p.Gln123Lys
A/T	38882115	missense_variant	p.Leu120Gln
G/A	38882142	missense_variant	p.Pro111Leu
G/A	38882152	missense_variant	p.Pro108Ser
A/T	38882159	synonymous_variant	p.Ala105Ala
T/G,C	38882182	missense_variant	p.Ile98Val
T/G	38882191	missense_variant	p.Thr95Pro
C/G	38882203	missense_variant	p.Val91Leu
A/T	38882204	synonymous_variant	p.Pro90Pro
A/T	38882212	missense_variant	p.Ser88Thr
A/G	38882216	synonymous_variant	p.Asn86Asn
T/G	38882231	synonymous_variant	p.Ser81Ser
G/C	38882239	missense_variant	p.Arg79Gly
G/A	38882247	missense_variant	p.Ser76Phe
A/C	38882248	missense_variant	p.Ser76Ala
C/T	38882257	missense_variant	p.Val73Ile
T/A	38882263	missense_variant	p.Asn71Tyr
G/T	38882284	missense_variant	p.Pro64Thr
G/T,C	38882285	synonymous_variant	p.Ala63Ala
T/A	38882289	missense_variant	p.Lys62Met
G/T	38882291	missense_variant	p.Asp61Glu
T/C	38882294	synonymous_variant	p.Ser60Ser
G/A	38882313	missense_variant	p.Ser54Phe
A/G	38882314	missense_variant	p.Ser54Pro
T/G	38882327	synonymous_variant	p.Thr49Thr
G/A	38882330	synonymous_variant	p.Asp48Asp
G/C	38882334	missense_variant	p.Ala47Gly
G/T	38882343	missense_variant	p.Thr44Asn
C/T	38882358	missense_variant	p.Gly39Asp
G/T	38882360	missense_variant	p.Asp38Glu
C/G	38882372	synonymous_variant	p.Gly34Gly
C/G	38882373	missense_variant	p.Gly34Ala
C/T	38882374	missense_variant	p.Gly34Arg
C/T	38882401	missense_variant	p.Val25Ile
A/G	38882412	missense_variant	p.Ile21Thr
G/A	38882414	synonymous_variant	p.Tyr20Tyr
G/T	38882422	missense_variant	p.Gln18Lys
G/A	38882432	synonymous_variant	p.Ser14Ser
A/G	38882450	synonymous_variant	p.Phe8Phe
G/A	38882460	missense_variant	p.Thr5Ile
T/G	38882461	missense_variant	p.Thr5Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_17679.1

MAILTLFFFLLPFSTHLQAYIPEEVFTINCGTTGNSSDGQRTWTGDADTKYLSSQDITVSDKAPTQSPSANQVPFSTARLSSSQFNYSFPVSPGTKFIRLFFYPADYPSFPRTHASFSVLSNQFTLLNDFNASLNADAQAMDTIFKEYVVNVNEGERLILTFTPSNPNSYVFINGIEVLSMPTDLYYTPENETGLTFVESSTLYSIGTSFALQTEYRIKSGWQVEIPPQKDTGLFRNWVNEKPYFIEQNSHLNDVSTDYSNMTITVNPYYVAPKELFRTARSMGTNATFNRMRNLTWEFPVDCGFTYVLRLHFCELDPYINDIGDRRFFIYIASQLAEPGADVMKWTQKQKGLAVHKNYAVLIPNIGTQKKFNLSLQMHPSEHSRYSDAFLNGVEIFKVSQAGSNSLAGPNPDPSQTPDISIHGQNGKIRRGSGTDIIEVDVGLVSGVVLISLAVFLVAFLLYKRTPYTKSKDYECKSTTTRNSSLPTDLCRRFSLDEMRAATQNFDKVFIIGTGGFGQVYKGYIDEGSVPVAIKRLKRDSQQGPREFSNEINMLSQLRHLNVVSLIGYCNDNKEMILVYDFMTRGNLRDHLYNTDNPPISWKQRLHICIGAAHGLNYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRLGPIGTSKTHVSTDVKGSFGYLDPEYYKRYRLTEKSDVYSFGVVLFEILCGRPPLIHSAERQQVSLSNWVRHCYESGTIAEIVEPTLKKEIAAECLKKFCEIGVSCLLEDGSLRPSMEHVAAMLEFTLELQESAEQRQNVNVAIPN*

CDS Sequence:
>Vu_17679.1

ATGGCTATCTTAACACTCTTCTTTTTTCTTCTACCCTTCTCCACACACCTCCAAGCCTACATCCCAGAGGAAGTTTTCACCATCAATTGCGGCACCACCGGGAACTCCTCCGACGGTCAAAGAACGTGGACCGGCGACGCAGACACAAAGTACTTATCTTCCCAAGATATCACCGTTTCAGACAAGGCCCCAACACAGTCTCCTTCCGCCAATCAAGTCCCCTTCTCCACTGCACGCTTGTCAAGTTCCCAATTCAATTACTCCTTCCCTGTCTCCCCAGGCACCAAATTCATTCGCCTCTTCTTCTACCCTGCTGACTACCCTTCCTTTCCCCGCACCCACGCATCCTTCTCCGTTCTATCCAACCAATTTACTCTCCTCAACGATTTCAACGCCTCTCTTAACGCCGACGCTCAAGCCATGGACACTATCTTCAAGGAATACGTGGTCAACGTCAACGAAGGTGAGAGGCTTATCCTCACCTTCACTCCCTCGAATCCAAACTCCTACGTTTTCATCAATGGCATCGAGGTACTTTCCATGCCAACCGATTTATATTACACACCAGAAAATGAGACAGGCTTGACGTTCGTCGAAAGTAGCACGCTGTACAGCATTGGAACCAGCTTTGCGCTTCAGACTGAGTATAGAATCAAATCTGGATGGCAAGTAGAAATCCCACCACAAAAAGACACTGGTTTGTTCAGGAATTGGGTTAACGAAAAACCTTATTTTATTGAACAAAATTCACACTTGAATGATGTATCAACTGACTACAGTAATATGACGATAACCGTGAATCCTTATTACGTGGCACCAAAGGAACTGTTCAGAACAGCGCGTAGCATGGGCACAAACGCCACTTTTAACAGGATGAGAAACCTCACTTGGGAGTTCCCCGTTGATTGTGGCTTCACTTACGTTCTCAGACTCCACTTCTGCGAGCTTGATCCCTATATTAATGACATCGGTGACAGGCGATTCTTCATTTACATAGCGAGCCAGTTGGCTGAACCAGGTGCAGATGTAATGAAATGGACTCAGAAACAAAAAGGTCTAGCTGTGCATAAAAATTATGCCGTTTTGATTCCCAATATTGGTACTCAAAAGAAGTTTAATCTCTCCCTTCAAATGCATCCTTCCGAACACTCGAGATACAGCGACGCCTTTCTGAACGGTGTTGAGATTTTCAAAGTCAGCCAGGCCGGGTCAAACAGTCTCGCGGGACCCAACCCAGACCCGTCTCAAACTCCAGACATCAGCATTCATGGCCAAAACGGAAAGATCCGCAGGGGTAGTGGAACGGATATAATTGAAGTCGACGTGGGGCTGGTATCCGGCGTTGTTCTGATTTCTCTTGCCGTTTTCCTTGTCGCATTTTTACTATACAAGAGAACACCTTATACTAAGAGCAAGGATTACGAATGCAAGTCAACGACCACGCGGAATTCCTCCCTCCCGACAGATCTCTGCCGCCGCTTCTCTCTCGACGAGATGAGAGCGGCCACCCAAAACTTCGACAAAGTCTTCATCATCGGCACCGGAGGATTCGGCCAGGTGTACAAGGGCTATATAGACGAGGGCTCCGTTCCCGTCGCCATCAAGCGCCTTAAACGGGATTCGCAGCAGGGGCCTCGCGAGTTCTCGAACGAAATCAACATGCTCTCGCAACTACGCCACCTCAATGTCGTGTCCCTCATCGGCTACTGCAACGATAATAAGGAAATGATCTTGGTTTACGATTTCATGACACGTGGCAACCTCCGCGACCATCTGTACAACACGGACAATCCCCCTATCTCGTGGAAGCAGCGGTTGCATATCTGTATCGGCGCGGCGCATGGACTGAACTATCTCCACACAGGAGCGAAGCACACGATCATCCACCGGGACGTGAAAACGACGAACATCCTATTGGATGATAAGTGGGTGGCAAAGGTTTCGGACTTCGGACTTTCAAGGCTGGGGCCTATTGGAACTTCGAAAACCCACGTCAGCACCGATGTGAAGGGTAGCTTCGGATATTTGGATCCTGAGTATTATAAACGATACCGTTTAACGGAAAAGTCCGACGTGTATTCTTTCGGGGTTGTGCTTTTTGAGATACTGTGTGGTCGTCCGCCTTTGATTCACAGTGCGGAGAGGCAACAGGTGTCGCTTTCTAATTGGGTGAGACATTGTTACGAAAGTGGAACCATAGCAGAGATTGTTGAGCCGACGTTGAAGAAGGAGATTGCAGCAGAGTGCTTAAAGAAGTTTTGTGAGATTGGGGTGAGTTGTTTGTTGGAAGATGGGTCGCTGAGGCCGTCCATGGAGCATGTGGCGGCGATGCTAGAGTTTACTCTGGAGCTACAAGAAAGTGCGGAGCAGCGCCAAAATGTTAATGTTGCTATTCCTAACTGA

Promoter Sequence:
>Vu_17679::LG4:38882473-38884473(-)

AGTAATTTTAAATTTTTTACTATATTATTTCTTAATAAAAATAACAAATATATTGTATATTTTAATATTATAGTGATAAATTAAGATTCTCTTATTCAATTATTATAATCTATATTATGTCTTTAGGGTTAAATCAACACCTACTAGGTTGTTTATATTTTTCAAATGGACAATTTGAAATCTAAATTTTAATTTTAAATAACATCTCGTTGTGGTAATTATATAAGATTTAATAAGCATCAACGAACTTGTCATTTTTTTTTTGTCCAAAAACCAATCAAATGTTTCATGCGCAAAGGGAAGTGTTCCTTAATTAAAATTACAGTGAAATTGTTTCGGAGAGGAGTTTATTTGTATCTTGTGTCTACATCTGTTATGAACACATTCCATCAATTATTTCTCTTGCAAGTAATGTAGATTAAAGTAAGGGATCGGTGTTGGATTCTTTGGTAAACTATTGAAATACATTTTTTTCAATAACATAAGTTTTTTATTTAAATATATATATAAATGAAATATTATGATTAGCAAACCAAAAACAATTTAATTTCACTAAAATATTAGTATAATAAATTCAAAAAAACTACACACAATATGATTCGTTAAATGAACACAGATAAGAGAAAGAAAGAAATAAAGAAAGGAAAATTTTATTTTCTAGCTTGAGCAGAAATTATCTCTTTTGAGTGAAAATATAGAAGATTCAACGAGCAAGGTCTAAATCTATTTTCTATTTTTACTTAAGCGAAAGTCTTTCTTCAACAAAAATATTATAAAAACAACCTCATGCAATAGAATTTATATTTGATGTTTTTATCCAAAACTAATTTATAAATACAACTCTTAAACACATTCAAAATTATCACTACAAAATTTGAAATTTTCTCAAACCATCCTTCACTTATTTCAATTCAATTTAAATAATAAATTATAGGAAACTATTCATACTCATCAAAATTATACTCAAGTGAATTTAATAAACCATATATTATAACATGCATATAATCCAATCATAAATCAACTTCTTATTCGAGAATCTTCAATTTAAAAGATTCTAAAACAATAATTTATTAATAAATCTCTTGTCATCTAGCTTCAAACATTCAAATAGTTTCCAAATAAAACACATTACCTTTATAAAACTCGAGATAGTATTTTAGTATGCAATGTTTCTCCTTCCTCTTTACCTCTCTCGTTAAACACCACCATTGAAGACCATTGATGTCATCGGCACAACCTTCCTCCTTCTCCTTCTTCCCTGCACGCAACTACCCCACATTCTCGGGTAGGTTATGAGTACTTATTATCTAAAAACAGTTTCTTTAATTTGTATTATATCAATATTTAAATATAATTTAAATGAATATAAAAATTAAATTTGACTAAACAAAAGAAAAATATAGAAAAAAGAATAAATGTTTAGTATACAAAAAAGCACCTGACTTAAAAGAAAATAAGAACACTAAAACCGGTTGAAGGAAACGACAATTATTTAGTCACACTAATTAAAATTCAGTGGAAGATAATATTTAGGTAGAAGAAAGAGGCATGTGGGAAGTATACGTATCCCAAATTTGAATTAGAATGTTTTTAATTTACCAACTTACAATTTATGTCATTCATATTATCGGTATTCAAAATTTTAATTTTATAAGGGTGGTAAAATTTATCTTTTCTTTACATTCTTTCGACAAATCATTTTCATAATAAAGTATAATAAAAATAAATATAGATAGAATTATATAATAAAATAATAATTTTAGGAACTTGTAATTTGAATGGAGGAGAAAAGTTAGGTTTTTATCTTTGTTTTTTCTTTTTGATTTTTCGCTTTTGGTCTGGAAAAAGAAACCGTCAACTGCATAAGCAGGCAGTGATATATCGCTAACAAACACACTGCTTGTTCCGGTCTCCCGGGCTTCCGTGCAATACCAACCTCACAGTGTTGATAAGTCATCGCCTCTTCAGTCACTTCTATTCTCCCCCTCTCACCACAAACC

Gene Sequence:

>Vu_17679(-)