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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17539 LG4 37099690 37100220 mini zinc finger protein 2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 37100094 missense_variant p.Pro83Ser
C/T 37100097 missense_variant p.Pro84Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17539.1
MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTTAALTCAACGCHRNFHKRQVETEVVCECSSPPSIGT*


CDS Sequence:
>Vu_17539.1
ATGAGGAAGCGGCAGGTGGTTGTGAGAAGAGAGGAGCCTCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGGACAACCGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTGGAAACTGAAGTTGTGTGTGAGTGCTCCTCACCTCCCTCCATTGGCACATGA


Promoter Sequence:
>Vu_17539::LG4:37097690-37099690(+)
GTGATTAAATTTGCTGGCAAAACATATCATTTATATATATGTGGATTGATCTTGGTATGGTGCAAGATTTGCACAATGCGTTATGGGTTCGTTCCTATCTAACTTTTGTCTAAGAGAACAAAGTTAGGTGACTGAATGGTTGGTCAATTTTTGGTACAAATCTAAAATTGAAGTTACTTAACTGGTTAAAAGGTTTTATGGCAACCATAAACGGAAGCTTTTGGTTTCAAAAATCATTATTCTGGCATGGTAATATACAGTGACTAATTAAAGATGAAGAAGACAAATTTACCCCACAACATTAATTATTTCTTGAATACCCAATTAACAAGTGGCAATGCATCATTACAAACATTCAACGTCAAAAAATCACGAAGAAGTTGATACAACATATCAAATTTAAAAACAAATCTTAAGAAAATAGATTTATAATTTTTTTAATGTATAAATTAATCATTTGTGAACTCCTTTTTTGTCTGAAATTTCTAATATATATTATAGATCGACCAGTGATATGATTAAATTATTGGATAAAAAGGATAAGAAGTTGGGCTATAAGCTGGAAATTTAGGGTAAATCGTGAAAGATTAAAACTAGAAAGTTTGATCTTTCCAAAAGATGCAAGGGATGGATCCTGTATGGGTGGGTTGATGAAGATGCATGCAAACAAAGGAATCATTGTGAGTTTTTGTCGTACAGGTTTGGCAAAGCTTACCTATCATACACACGTTTTTAGGTCAAGCGCTATAGACAAATGTTATTGGTATCGTATCAATGCACCCCACAAAATTGCCTTTTACAATCAAGTTAGGGGCCATGGTACGTGTGAGGCTTAAATCTGGCTTAGCTGGTCATTCCAAATGAAACCCATCTTTATCGTTTTGCTAAGTAAACCCATCACTATTTAGGTGAAAAGCAAAAAGTTTTCCAAATTAAACCCATCACTATTCAGGGTTTTCATCATATATGTGGGAATCCTTTTGCATTCGTTTCGTTTTCAATCTCAAAGGATAATTAATTAAACACGGAATCAACTCAATTAGCTCAATGTATAGATAGAAAACAAAACGGTTAAATAGCCTCGTCAATGTTTATCAAATCAAGATGCATGCCAAATTTCATCATAAATGCACACCCTTTTGTTTTTCTTTTATTTTCGTGTTGCTAATGCTAAGCAATTACAGAAAATGAAAATCATCATAAGTTAATGCCAGTCCAATATATATAAAAATAAAATAAAATCAACTGTGCTTAGTGTGATCCGGTTTAAATAGCGTTACTAAAATAAGAGAAAACATTCCAAGTACTCTATTCACTCAAACTGCAAAGAGTCAAACTACCTGCTAATGTTCTTTAATGATGAATTGACACGACAATCTAAAAATAACATACATGACAGAACCATAAACTTTAGCAAAAAAAATCGTTGGTCGAGACCTAATTTTGATTAACTCTAATAGCCTAACAAGATTAAAGACTCATCCTTAAACAATAATTCATTACGCGGCAAATTTGTGAAACCCATTTGACCAGTGAATCCCTTCTGTAGTAAAAGGCAAGATGTGTTACATGCCATCGTTGAAAATCTAGTAAAGTTCACGAGTCAACATAATCGTCTGATATACCAGCTATGTTATTAATATTACAGTTTTTTTAATTTCATACTCTTAAAAGTGTGAACAGAAAGAATAAATACTACTTTATCAGTGATTTATATATACGCTATTATAAATAATAAGGTTTTTGAGTTTTATGATTTAAAAATATTTGAGGGTGTATGTAAAAAAAAAATATATATTGACAGTGCATGAGAGTTAAAGTCTTGTTTAACAGAAAATTGTTATGCTGGAATTAATGAAGGTTTTGGCAAGAATTAATTATGACATGATTGAATAGTAGATACACTAAAGAAAGAGAGGTGATTATGACTTATGAGTAGGTCCCACTGAGTTGTTAATATTAATTGAAAGAGTACATCAAGTTCATCTTTTATAAATACA


Gene Sequence:
>Vu_17539(+)
ACTGCTAGGGTTAGGGCTCTGCATATCCATTCCAAGTGAGTTGTACAACGCTCTATCTCTCTCTAGCTCTTGTTCCTTTCTGTTTGAGTTTGTGATTTGAATTGACGAAAGGTCTGAGAAAATTTCATTTGAAGCAGGTGAAAGGGAAGAGAAGAAGGATGAGGAAGCGGCAGGTGGTTGTGAGAAGAGAGGAGCCTCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGGACAACCGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTGGAAACTGAAGTTGTGTGTGAGTGCTCCTCACCTCCCTCCATTGGCACATGAGAGCTTTTTATACATACACCTCAACAATTATGCAACTATTCCTCTCTTGTAATATATTTTGTGGACTTAATTTGCTTTTACTTCTTAAGTATTGAGGTTTTACCAC

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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