Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17519 LG4 36864611 36867434 PREDICTED: homeobox-leucine zipper protein HAT7-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to auxin, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to auxin, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 36864642 3_prime_UTR_variant
C/T 36865096 missense_variant p.Ser190Asn
A/T 36865367 intron_variant
C/G 36865423 intron_variant
C/T 36865494 intron_variant
A/T 36865562 intron_variant
G/A 36865772 intron_variant
A/G 36865801 intron_variant
T/G 36866049 intron_variant
A/T 36866053 intron_variant
T/A 36866055 intron_variant
A/C 36866206 missense_variant p.His166Gln
G/C 36866280 missense_variant p.Leu142Val
C/A 36866293 missense_variant p.Trp137Cys
C/T 36866347 synonymous_variant p.Leu119Leu
C/T 36866530 synonymous_variant p.Ser58Ser
A/T 36866633 intron_variant
C/T 36866634 intron_variant
A/T 36866767 intron_variant
C/T 36866988 intron_variant
C/T 36866992 intron_variant
T/A 36867072 intron_variant
G/T 36867206 missense_variant p.Pro4Thr
T/A 36867381 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17519.1
MAFPPSHTFMFQTHEDHDHHQLHLRSTSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAHNQKLHAELQTLKNRDCCETGTVISHKKDTEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSHKPTTMTQLLQSSSRSDLQDESFCNMFHNIDEQQNFWPWTEQQHQFH*


CDS Sequence:
>Vu_17519.1
ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGGGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGAGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAAGAGTATGAAGTTCTAAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCATAATCAGAAGCTACATGCAGAGCTACAAACTCTGAAAAATAGGGACTGCTGTGAAACCGGAACAGTAATTAGCCACAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCACAAGCCAACAACCATGACTCAACTCCTCCAAAGCTCATCAAGATCAGATCTCCAAGATGAAAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAA


Promoter Sequence:
>Vu_17519::LG4:36867434-36869434(-)
TATTTAATTTAAGTGATTATTTAATATATATTTTCACTAGATTATTTTAGAATTATAAATTAATTATATGTATAATATATTTGATATATGATTTGAATATACAATTAAAAAATGAGTGTTAAATATATAAGATTATTAGATTTTTTTATTTTGTTATTATTTTTTATTTATATTTTAGATTTAATATATATTTTTTATTATAAATATAATATATTTTTTATATAACAAAATTAATCTCTCATAATTAATATTATATTTAACATAATATCAAAATTATTATTAAAATCGATTATAAAGATATTTATTATTTGTTCATTACATTATTTTTATTATATTACTTATTTAATATTTAATTTTATATTTAAAATGTATGTACTTTGTGGAAAAATGTTTTGAAAATCTCATATTTATTACATAAAACTAACTCAAAATATATAAATAAAATATTAATTTATGAAATTAAATTAAGTTTAAAATCTAATTTTTATTTTATATATATATAAACGTATAACTTAATAAGAAGAGAGAGAATTTGGTATGGACCATTAAAATATTATGGAATTGTGTGCTATAGTTAGCATATCTATGAATCTTGCATGTTGAAGGATACAAAATTCAGCAGCCATGTGTATAAAAAATATATATTTTTCATCATTATTGTAATTTGGACTATAGCTTTGACAAAAACCATTTGTGTTACAGATCACACACATCTATGAATCTTCTGTTCATCTTTATCTTAAATCAGTAGCTACACAGTAAGGTGTGCCTATGTCATATTTATAAAATCAATAAACATAAGTGTCAATTTGTATAAATACTATTTCTAACATATTTTATAGAAAAGTAGTTTGAATGTAACTATGCTTACAGTTTGTGAAAAAATTAACTCAAATAAAGAAAATACTTTAACATGCTATCACTTTATTTTAAATTTTACACAATTATAAATACGTATTTTAATAGTATAATATTTGAGGAATAATTTTATCATTTATAAGGATCTTGCCTGTCTTGAATTGATAGGGTCGTCTTTTACGGAGGATAATTGTGGCTTCAATCGAAAAAATATCTTTTATAAAAATAATTGTGTATATTTTAATATAATAACATATTTTATAATAACACATAAATTATTAATATTTTCATATCTTTAAATTTGGTATTAATTTAAAATTTTATATAATTGTATCCGAACATGATTGAAGCATATTTATATAATTTTTGTTGTTTTTTTCTCTCAAATTTAGTCTTCTTTTACTATTTTTCCTTATAAAAATTTGCTCATAAAAAATAAGTAGTGTTTTTTGAGATAGAAAATCATTTGAAAGGTTCAAAGTTTGCTTACATTTTATGTTAGCATTTAGAGATTCTTAATTTTCGATAATATCATGTTACAACAAGATTTATTTTAAACTATAAAAAAAACGTTACAATGTTAATATTGACCTAAATTTGATAACTTTGAAATTTAATGTTAACATTACGAAAAATAAATAAAAGAACAAATCCGTGAAATAAAAATTAAAGAGTCACTTATAATTTAACCTTCATTTCATTCCTTTACAAATTTTACTTTTTTAATAATAATTTACTTAAATTAACTATGTGAATAACTTTTCATATAAATATATAATAATAACAATAATAGAAGAAACAAGTTCTAATAATAAAATTATTATAATATATAAAGTTTATTTTAATTAATCATAAGAATGTGTACTCTTTATGTAAAACTGTTACTGCATAAATGATATGAATGTAGAGTTTGTATGTGAGTGAATAAATATATATTTAGATATAAAAATGAAGGAAGAGAGAGAAGATGGGTCCATGAAAAGTCTAATATATGAATTTGATGTATACTAGCATTTCATCGTTTGCTTTTACACCTCTTATTATGATGTTTTCTCTCTCTGCTGTCTGTCTCTCAGCCTAAAAATCGCTGTCTTTCGGTCTGCATACCTATCATCATCACCATCCCTCTTTCTGAAAACTCT


Gene Sequence:
>Vu_17519(-)
GTCACCATGAGAGTGAGAGCCAAACTCCTGTGATCGCCACCACCCTCTTCATCAAACCCTTCTACCAAACACAACAAGCTCAGACAAACACATCAACAAAGAGAGTTTGATGATTCTGGGACTGATTCTGTCACCCTCCTAAAGCCTTGCATGAATGAATGATAATACTACTCACAACATCACAACACCAACAACACCACAACACCCTGTTCTTCTACCATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCACCAACTCCACCTACGCTCCACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGTAATCACAACAAAACCACATCCCCCCTCTCTACACCTCTAATTCCATCTCAATTCTTGTACTTGTTGATGTATATCAAGGTCATACATAACCGTTTGTACCTGCAGCGTCAAAGCTTTTCTGTTCTATGTTATTGTATCATGACTGTGATTTCAGCCACATCGACTGTTTTTTATCTGTAATATCAAGAATCTTGATGAAACTCTGATAGCTAACACAATTTGAAACCTTGATGTGTATGCATATCAAGTTTTTAAATAGCAGTCGCAGTTTGATTGTGATTCCTGATAAATGTAGCCCATAGAACTACAGTAGCAGTTTCTTTGTGGTTTATAAGATCTTAGAAACTTTGAAATCATGGGTTGTTTTTTAAAATCTTGATCTTCTCGGGTATGTGATTTTTTGAAAGATTATACGGGTCATCTGATAAAAGATAAGTTTTTCCTTTTAGGTAAAGGAAGGCTGTGTTGTTGTTATATGAATATGTGGTGTTGATTCTGTGTGGTGTTTAGGGGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGAGAGAAGAAGAAGAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCGAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAAGAGTATGAAGTTCTAAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCATAATCAGAAGCTACATGCAGAGGTAATCAATGGTATCATACGCAGCTTCTGTATCTATTCTTCAGTTTTCAACACAAAAAACTTAGACGAAGTTCTTTTATCTTGCTCTCCCATCAGAATTGGAATTTCAATTCCAGTAATCTGAAAAACAACTTACACTCAGATTAATCAAATGATATTGCTTGCCGAACTTCAATTCTGATTGAAAAAATACTATCGAAATTACTTAAAGAACTGCATTCAAGTTTTATTATTTTCGATACCATGTTTGTGACTAGTCATTGACTAAGGTTCCTCTGTGGGTCTTCTTGGAGAAATGTGAGCTTGAAGTTTTTGAGATCTTGGAGGGTTATTTTGGTACTCTATTGAGTCCTGATCTTGATTCAGAATATGATTAAACGACCGTGTAATCTTAATAGAGTTTGAAGTGAATCCAAAATCCAATTGTCTGGTGTTGAATTGTTAAAATTGGATTTTGTAAAGAAAGGAATGGAGTTTTTCTTTGTCTCGTTTATTCCCACCACAGTTTTATTTTCTAGAGTTTGATTAGCTAAATTTTGTAAAGGTCCTCTTAGCCGTTTCAGTGCGCTTCCTTTTCCCTAAACAATGGATGAAATTGATCTTTTTTTCATGTTTGAAAAAAGTAAGCTAGTCTTTTATGCATACATATGTGTTTTAACTATAAGAGGGTCTTTTGTTCTTTTTACTTTTGGGTTTTGGTTTTTCCCGTTATTTAGTGAGAAATCTCCATTTCACTGATTGTGTTATGATGATCCCACAGACGTTAGGGACTAATTTTAAAGAGATTTTGGTTCCATCATTAACTTGTTTTTGTTGATTGAGTTGATCATTCTCGGGAGGTGTCAGTGTGACAGTGTCAGAACTGAGAACTGCGAATTAACAGTAATGTTTGCTTTCCTTTTTCCATTGAAAAACTCTGTGTTATAACTGTTCCATGTTGCTAGCTATGAAAAAGACAAGGTTGCATTTGATCCTTCACATGGAATCAAAACATGAACACACAGTTTTGGTTTTACACTTTTACTGTGTGGTGTTTGCAGCTACAAACTCTGAAAAATAGGGACTGCTGTGAAACCGGAACAGTAATTAGCCACAAGAAAGACACTGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCACAAGCCAACAACCATGACTCAACTCCTCCAAAGCTCATCAAGATCAGATCTCCAAGATGAAAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGACCGAGCAGCAGCACCAGTTTCATTAATCGAAAAACTTGATTTTGGATATTATAAATGATTTGAAGTTGAAAGGTTGTGAGAAGTAATTAAGTTCATTAATTAGGCTTAGCTCAACTTTTTTTTTCTCCCTACCAGTTTTTCGGTTTATGCTTATGATGTAGATTGGTGTATAAAGAGTTTGAACACATTTACTTGAGTCCTGATCAAGAGAGGTGGTGAACTTTGAATAGT