Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17295 LG4 34059686 34061590 PREDICTED: serine/threonine-protein kinase HT1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/G 34059921 upstream_gene_variant
C/T 34059929 upstream_gene_variant
C/A 34060085 upstream_gene_variant
T/A 34060087 upstream_gene_variant
T/A 34060154 upstream_gene_variant
G/T 34060156 upstream_gene_variant
C/G 34060249 upstream_gene_variant
A/G 34060250 upstream_gene_variant
A/T 34060280 upstream_gene_variant
T/C 34060287 upstream_gene_variant
C/T 34060296 upstream_gene_variant
G/T 34060341 upstream_gene_variant
T/C 34060344 upstream_gene_variant
A/G 34060359 upstream_gene_variant
A/T 34060371 upstream_gene_variant
A/T,* 34060385 upstream_gene_variant
T/C,* 34060410 intron_variant
A/T,* 34060438 intron_variant
A/G 34060466 intron_variant
G/A 34060473 intron_variant
G/T 34060482 intron_variant
C/G 34060666 missense_variant p.Leu80Val
G/A 34060798 intron_variant
C/A 34061026 intron_variant
G/C 34061108 upstream_gene_variant
G/A 34061180 upstream_gene_variant
C/G 34061249 upstream_gene_variant
A/G 34061258 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17295.1
MVIVTELLSGGTLRKYLLNMRPKSLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPSDRPNFSEIIQMLLRYLSTISSPEPVLHLRMSSSDNVVLPPESPGTSALMLGRDDSGETSTDKAEDRPKGFFFCFNQCY*


CDS Sequence:
>Vu_17295.1
ATGGTTATAGTGACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGAGGCCAAAGAGCTTGGATATGCCGGTGGCTGTTGGATTTGCTCTTGACATTGCCCGAGCAATGGAGTGTTTACACTCCCATGGGATCATTCATCGTGATCTTAAACCTGATAACTTGATCTTGACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAGGAATCCTTAACAGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCTGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGCTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTTAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAGGAAGATCCAAGTGATAGACCAAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCCACCATTTCATCACCAGAGCCTGTTCTTCATCTGCGGATGAGTTCATCTGATAATGTGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGACTCTGGAGAAACCTCAACAGACAAAGCTGAAGACAGGCCTAAAGGGTTTTTCTTCTGCTTCAACCAGTGTTACTGA


Promoter Sequence:
>Vu_17295::LG4:34057686-34059686(+)
TTTGCACCACTTTAATAATTTTCAAGTCAAATCGAAGTATAATTGTAAAACACACCATTCAGGATCATTCTTTGTCGTAAAAAACAATTACACAGTTTAATTTTAGAGTTAAGAATACATTCATTAGAATTATTTAATATAAGTTAGTTCATTTATTATTGTTTATTGTAAAAGAGAAAAAAAACCTTTAAATAAAAAAGTCAAATTAACCAATACTATCACCTCACATATTATTTTATTTAATATACTTACACTCCATTGATTAATTAAAAACAAACACACAGTTTCTTTCCATATTTTCTTTTGAAAGTCCCTTTCTTTTCATCTCTACTCTTTAATTTACTCATATGCTTTAAATAATCAGGTCAACACTACAGTTGCATTGACTTTGCCATTCATATGGAACACTAAAAGTAAAAAAAAAAAATATATAATATTTATTTGAATGCAAACGTTTTACAAAATTCTTTATTAAAAACATATATTAAACAGACTTGAAATTTATATAAAAGAATAAACATTTACAAAGAAAAAAAAAACACTGCTTTGAGTTTGTGACAGCGACTCAACTCCTTCCGCGGTTTTACTTTACCAGCTGAATGCCACTTGAATACGCGTTGCAGAGATAAAATAAAATAAAGTCATTTTCTTTTATCTTCCACCACCTTCTTTTCTTCATTTCTCAATCTGGGTGTTGGTTAACTTTCTCTCATTTTTCAACCTTTTTTTTCATTCTCATAAAAATGAAACCTTTTGTTTTTAGATATTGTTGTTTTCTCCTTTGTAAATAGTTTTCTGCTGACAAGGCCTGTTGTTTTGGATCTTTGATTTGATTTGTTTCTATTTTTAACTACTACTCTAACTTCTGGGTTTGTTGTTGAGTGCCTCTTTGCATGTGGGGTTTTATTCTCTGCCTCCCAAACAAAGGCAAGTGTTGATTTTTTTCTCTTTTTTTAATGATCCATGTCCCTGATTTTGGGGATTGGAGTGTGTATTGGGAAAGTCGCCTCTGGGGTGTGCCAAAGTCTAGCCTTTTTCCCTCTTTGTTAAACTCGTAGGGGTTATAGCTTTCTTGCATGTTCTTGTGCAACTGATTCATAGTTCATGCCAGTTAAGGGTCTTTTTCTTTTAGTTGGTTGGTCTGCTTCCACATGTGTTACTGTGTAATGCAGAGAATGACATGCTAGATAGATTCACATCTTTTTGAGGAAAACAAGGAAAAATGGGATCTGGCAACGAGGTTCACTCAGTTGAGGAGTTCAATTTGGAATCAAAGTGGCTTGTAGATCCCAAACAACTATTTGTTGGTCCAAAAATTGGAGAGGGTGCTCATGCCAAAGTATATGAAGGAAAGTAAGTCAAACCTGTTTCATCGTATGTTTTTGGATTCTATTTTTGGTATCAGTTTTTGTTTTTGAGTCCTTTTATACTAAAATTTCTAATTCACTTTTGTTTTTTTTTTTAATATTTAGTGCAAAGTTTTTTTTTGACTTATATGTCAGCATTGATCTGCTTCTCTTTTCATCTATATTTGCATCCAATTTCACACTCAGTTTGTATATAATCTGTTTTGGAGAAATAAACATTTTGTGTGCATTAGATAAAGTTATGTGCTTGTTGAATTGCTAATTTTCTGATTGCAGATATAAAAATCACAACGTTGCTGTTAAGATCATCAACAAGGGAGAAACCCCAGAAGAGATTTCAAGGAGACAGGCTCGGTTTGCCAGAGAGGTTGCCATGCTGTCGAGAGTTCAACACAAAAATCTGGTTAAGGTTGTATATTAATTTTTAACAAGGTATAGTTAGATATATATACATAGTTAGATATATATACATATTCATATTATATATATACTTTTTAATCAGAACTGGCAATAGGCTGAGGTTAACTAGTACTTAGATCACGTTGATAGTGATGAACTTGAAAAAGTTTGTCTAATTGAAGGTCCTATTTTTGGTTTGATTCCAGTTTATTGGGGCTTGCAAAGAACCTGTTA


Gene Sequence:
>Vu_17295(+)
ATGGTTATAGTGACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGAGGCCAAAGAGCTTGGATATGCCGGTGGCTGTTGGATTTGCTCTTGACATTGCCCGAGCAATGGAGTGTTTACACTCCCATGGGATCATTCATCGTGATCTTAAACCTGGTATGTCTGTGTAAACGTTGAACTCAGTGGTTTTTGTTGAGTTTTAGCTGGTATAAGGAAAAGATTTTAACTTACATTTGGTGGAATTTTACATCCTGTTTCCTTTATACATGCTTGATTAGTAGACCTTTCAAGCAATTTTAAAAATGATTGGCAATTTTGCATCTTTTCTTTGTTGGTCAATACTACACTATCCACCTATTTTTGTTTTGATCTTGGGTAGAATTGGTCTTGATCGAACTAATTTTGAACTGTTGAATTTAAGGAAGTTATGTATCCATATTAGTCTCAATCAATCATAGATTTATATTGGAAGGTGTGTTTTTCGTTGGAAATGCTATCGTTGATTTTTCAATGCCACAATCCTTGTCTCTTTAAACCTAACTAAAAAGGCCAAAGAATATACATCTCGAACGTAAGACTAGACATTAATGGGTGGTCCGATAGAACCATAGCTCTGATACCATGTGAATAAGTGGACTTTAAGTCTAATTTAACCCCACAAAACCGGCTTATAAGATGAAGTTTACATCTACTTATATATCACAAATTGGTTTTATCCGGCTTATAAGATAAAGTTTACATCTACTTATATATCACAAATTGGTCTTATCTCTAGTTGACATGGGACTTTCAACACTAATATATAAGAAACAAATCTGAAAATTAAGGTTTATATACAATCTTCTCTATATATCAAAGAACAACATAGTATTGATAACTTGCTTCTTTCCTTTGCAGATAACTTGATCTTGACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAGGAATCCTTAACAGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCTGAAGTGCGTCTGAACTACTTTAAACTATGAACATCTATACATCTTCCAGTTTTTTGTGAGGTAATTTATCATTACTTTCTGTTTGGTGGCAGCTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACCACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGCTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTTAAGGTAGATTTAATAGTTACTTGATAATAATACTTCTGATTAAGGTCATTATCACACTTGCACATTTTATGATCCCTGAAAGTGTGAAAATTCTCATTCAAATGTAATCAATGTGCAAATATGCATTTCTCCAGCGATCAGCGATATAAAAAGGACAATTTCATCATATTTGTTTCTTGGCATTTCAGATATGATAAACTGCACATTTTTAGTTGTGTCATTAGGCTAATATAATACATTTATCTCGTATACTGGTATGATTATGAATTTATGAGTGTGACTACATGACTTAATTATTCAACTATTTCAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTAGCTCTGATTGTAACTTCATGTTGGAAGGAAGATCCAAGTGATAGACCAAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCCACCATTTCATCACCAGAGCCTGTTCTTCATCTGCGGATGAGTTCATCTGATAATGTGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGACTCTGGAGAAACCTCAACAGACAAAGCTGAAGACAGGCCTAAAGGGTTTTTCTTCTGCTTCAACCAGTGTTACTGA