People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_17219 LG4 32978990 32983417 U-box domain-containing protein 52-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 32979660 downstream_gene_variant
A/G 32979871 downstream_gene_variant
A/C 32980079 downstream_gene_variant
A/T 32980087 downstream_gene_variant
A/T 32980103 downstream_gene_variant
T/A 32980107 downstream_gene_variant
A/T 32980155 downstream_gene_variant
T/C 32980162 downstream_gene_variant
A/G 32980220 downstream_gene_variant
A/G 32980256 downstream_gene_variant
A/G 32980553 synonymous_variant p.Ala702Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_17219.1
MSRMNSEKKLGAGRVVAVAIENNKTSQHAAKWAVDNLLPKDQCLLLIHVRQKSSSGNSTNEAVGDNESKELFESFRVFCNRKSIQCREVLLEDMDISKALLENISVNSIEFLVLGAPSRGGIVRRFRTTDVPSSVSKGAPPFCTVYIISKGKISSVRSATAPLAPKPAAPRNQLQPQQPQPLQPQPRYQPLMRNPEGLFESHQTRNYPPRPSQGSGIRQMVLDDDDIISPFTRAGKSYESSKLPDSDISFVSSGRPSIDRIFPTMYDDLDTASGRLSGVSDSDTRSFASSMSSQTNSIDDYSFSSQSRLSDCTDDVEFEMRRLKQELKQTMDMYSSACKEAMTAKQRAMELQRWKAEEQKRSEDSQTVDASAVQFMEMEQDRIRAEALEKIAALEAQKRMTQVERRKPSESFGHGPAMYRRYTIEEIEEATNMFSDSLKIGEGGYGPVYRSELDCTQVAIKVLKPDAAQGREQFQQEVEVLSRIRHPNMVLLLGACPEYGCLVYEYMANGSLDECLFRRGSSRPPLPWQLRFQIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVADSVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQLVTARPPMGLTHHVSRSIEKGTFPEMLDPAVEDWPVEHAMHFAKLSLGCAEMRRKDRPDLGKVVLPELNKLRAFAEESMSPMMMFGLRTGGNGGGGGGYIPRNSNPSSSTHSDTSDLSGFSGYESRSSSSSQGRLKERRSCSLFLLHQYHSELMEKSNSNPRKSSTNRNRMVLEKGVVGLGIVAAMSVTNINNSIDVVSSAKPAANFSSSYDLFHASPLSTGTRFLFPTPHFLNSCNLCYKHLHGIDIFIYRGEKAFCSAQCREAHIRNYEHEQDKYYYKHNNALNVSVPILAA*


CDS Sequence:
>Vu_17219.1
ATGTCGAGGATGAACTCAGAGAAGAAGCTTGGTGCAGGACGTGTGGTGGCTGTGGCCATTGAGAATAACAAGACCAGCCAACATGCTGCCAAGTGGGCAGTCGACAACCTTCTTCCCAAGGATCAATGTCTCTTGCTCATCCATGTCAGACAAAAATCATCCTCAGGGAATTCCACCAACGAAGCTGTGGGTGACAACGAATCCAAGGAACTCTTCGAATCGTTTAGAGTTTTCTGCAATAGAAAAAGTATACAATGCAGAGAAGTGTTGTTGGAGGACATGGATATATCTAAGGCATTATTGGAAAACATTTCTGTGAATTCCATCGAGTTTCTGGTACTTGGGGCGCCATCAAGGGGTGGCATTGTTAGGAGATTTAGAACAACGGATGTTCCAAGCTCTGTGTCAAAGGGAGCGCCACCATTCTGCACAGTGTATATAATTTCTAAAGGAAAAATCTCGAGTGTGAGATCTGCCACTGCTCCATTGGCTCCTAAACCTGCCGCACCACGTAACCAATTGCAGCCACAACAGCCACAGCCACTACAGCCGCAGCCACGCTACCAGCCACTGATGCGAAACCCTGAAGGACTTTTTGAATCTCATCAAACCCGCAACTACCCACCACGACCTTCACAAGGGAGTGGGATACGCCAGATGGTGTTGGATGATGATGATATCATATCACCATTCACAAGGGCTGGAAAATCATACGAGTCTTCAAAACTTCCGGATTCTGACATATCATTTGTGAGCAGCGGAAGGCCAAGCATCGATCGAATATTCCCGACAATGTACGACGATTTGGACACTGCGAGTGGGAGGCTTTCGGGTGTTTCGGATTCTGACACCAGAAGCTTCGCTTCTTCAATGTCCTCGCAAACCAATAGCATTGATGACTACTCCTTCTCCTCGCAGTCAAGGTTATCAGACTGCACGGATGATGTTGAATTCGAGATGAGGAGGCTGAAGCAGGAACTGAAGCAGACGATGGATATGTACAGCTCGGCCTGCAAAGAAGCTATGACTGCAAAGCAGAGGGCGATGGAGCTTCAACGTTGGAAAGCGGAAGAACAGAAGAGATCGGAAGATTCGCAAACGGTTGATGCCTCGGCCGTACAATTCATGGAGATGGAGCAGGATAGAATCAGAGCAGAAGCCCTTGAAAAAATCGCCGCACTGGAAGCACAGAAGAGAATGACCCAAGTAGAGAGGAGGAAACCGAGTGAAAGCTTTGGACACGGCCCTGCCATGTACAGAAGGTACACCATTGAGGAAATTGAAGAGGCGACAAACATGTTTTCGGACTCTCTTAAGATCGGCGAAGGAGGTTATGGTCCTGTCTACAGGAGTGAACTGGATTGCACCCAGGTTGCCATCAAGGTCTTAAAGCCAGATGCAGCTCAAGGGCGCGAGCAGTTTCAACAGGAAGTAGAAGTGTTGAGTCGCATAAGGCATCCAAACATGGTTCTGTTGCTGGGGGCATGTCCGGAGTATGGTTGTCTTGTGTATGAGTACATGGCGAATGGAAGCTTGGATGAGTGCTTGTTCAGGAGAGGAAGCTCACGTCCTCCTCTTCCATGGCAGCTAAGGTTCCAAATTGCCGCAGAGATAGCAACAGGTCTGCTTTTCCTCCACCAGACGAAACCAGAGCCACTGGTCCACCGTGACCTAAAACCGGGCAACATTCTCCTTGACCGGAACTACGTGAGCAAGATCAGTGACGTGGGGTTGGCCAGGCTGGTGCCTCCTTCCGTTGCTGACAGCGTGACACAGTATCGCATGACTTCCACTGCCGGAACCTTCTGCTACATCGACCCGGAGTACCAGCAAACAGGCATGCTGGGAATCAAATCCGACATATACTCTCTGGGGATCATGCTTCTGCAATTGGTGACGGCGAGGCCTCCGATGGGTTTGACTCATCATGTTTCGAGATCCATCGAGAAAGGGACTTTTCCCGAGATGCTTGACCCAGCTGTTGAGGACTGGCCAGTTGAACATGCCATGCATTTCGCAAAGCTTTCCCTGGGATGTGCAGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTCTTGCCTGAGCTCAATAAGCTCAGGGCATTTGCTGAAGAAAGCATGTCGCCTATGATGATGTTTGGACTTCGAACCGGAGGAAATGGCGGCGGCGGTGGAGGGTATATTCCAAGAAACAGTAACCCATCATCATCCACACATTCTGACACGAGTGACTTGTCGGGGTTCTCTGGATACGAAAGCCGCTCAAGCTCATCATCACAGGGGAGACTGAAAGAGAGACGGAGTTGCTCACTCTTTCTGCTTCATCAATATCATTCAGAATTAATGGAGAAGTCTAATTCTAATCCCAGAAAATCATCAACGAACAGGAATAGAATGGTTTTGGAGAAAGGGGTTGTTGGGCTTGGAATAGTGGCAGCCATGAGTGTGACCAACATCAACAACTCCATTGATGTTGTTTCCTCTGCTAAACCTGCTGCAAACTTTTCCTCAAGCTATGACCTTTTCCATGCTTCCCCTCTCAGCACTGGAACCCGCTTTCTGTTTCCCACTCCTCATTTTCTCAACTCCTGCAACCTTTGCTACAAACATCTTCATGGGATCGACATCTTCATTTACAGAGGCGAGAAAGCGTTTTGTAGTGCACAATGCCGTGAGGCTCACATTAGAAACTACGAACATGAGCAAGACAAGTACTACTACAAACACAATAATGCCCTCAATGTGTCTGTGCCTATTCTTGCAGCATGA


Promoter Sequence:
>Vu_17219::LG4:32983417-32985417(-)
ATTTGACAGTGGATAGAATAATACGTTTAAAAAACATAGTTAGAATAGGTTTTAATCTATAATTTTACTATATTATGTTAAGAAATTTCAAACATATAAAATCCACTTATAAGGTGACGCTTATATTCATATGAATATTTTAAATTGATTTTATTTATAGTAATGATGAGACTTCTATCAAATATACGTAGCTATAAGAATGTATAGACACTCTTAACTTTGTTAATGAATATTAGGAAGTTTTGGAGGTCTATGATGGCACAGTTCTTGCAATAGTTCGAAAAGGTACAGATTTTGGAATCTCCTGGTTGAGAATGCTTCATTATACCTTGTTGAATGTTCTCTCCAGATCAAGTTTTCATTAATGGCTTTGTAATCAGGCATTTGAACTAGAATGAGAAACAAAGTTATGTTGTGGTTTTGATTGGGTTTGGAACTCAAGTGTTTTTTTATCTCATTACATACTTGTTTTAGGATACACTGTTCACCAGTAATTTTTTGTACATATACAACCACTTCAAACTTCACTCTCATACATAATTAATTAATCACAATTTAATAATTAATTCAAATTAAACTTAAACCACTAACAACTTGCTCACTTTCATGTTTTGAAATTATAATTGTTTTTATTATTTAACTGAAAACTTGATTCAAAATAAAAGTTCAAATTTTCTTCCTTCAAGTTTTCAGAACATGTTTTTTGTTATTCCTTCACAACCATTTTCATTATTATTTAAATGAAAACTTAACTCAAAGTAAAAGTTTCGGTTATAAATGAAAATGATTATTTAAAAGTTTCAGTTTTTTAAAGGTATGACTGAAGAGCTAATTAAAATAATGCATAAATAATTCCAACACACTTTTGTGATTAATTTTACGTAAAAAAATACTTCAAGAATTAGAACACATTAATCATTTTAATATTAAATTAACTAAATCATTTTATTCCTAAATTTTCTTAATTTGATTATCAAAGTTAAGTGTAGAATGAATAATATAAAAATTAGCTACAAAGTAACAAATTCGCATTTAAGTTGCAATGCAGTATGTACTTTGAAATCAAATTTTAAAAAATAAGAATAAAATACTACGGTTAATTTAAGATTTATTTTTTCTTTTAAATAATAAATCACAGCATGTTTTCTAATTTTAGAAGTAGTTTTATATAAAATTAATTTAAAAATCATCTCCAAATTTTTATATTTTATTTAAATTAACTCTTCATGTATATCTTTGAGAAAACTGAAATTTTTTATAGATATAAATAGTTTATGTCTTGATGTTATAAATAACTATTTATATCTGAAACTTTATTTTGGATTACTTTTTCAGTTAAAGTGAAAAAAAGGTTGAGACATAGTGATGGAATGATGAAAAACTCGAAAGAAAGAAAAAACTAAACTTTCATTTTGAATTAAACTTTCGGTTTAAAAATGATTTTAAAAACACATAAATATATATCTTGTATGTACCAAAATGTGAAAGTGAGTGTTTTAAATTTTATTTTAATTAATTATGACCGAATGCGTATGCTAGATGAGTGTCTATGCAAGATTTCCTAAAAAATTTATCATAGTTAAGTCGAAATTAAAAAGTAACTCTCACACAAGGGACATTATCATTGTTGTAAAAAATAGAGGGTTGAACACAGCTAAAATGTGCACATTAATAAATTTAAGGATTAACTAGAAGCAACTATATCTATATTTGTAGTTGATTTAGAGAATATTTTTGTCTGGAATTTGACTAAATCCTTTATAAAGTGATAAGGATTTGGTGATGTGAGAGAAGATAACTGCAACCCAACTGTACATTCCCAAAACGAAGGGTTGCTGCGCTAAAGCTCCTACAAAAACTGCTAATTTTGGAACCCATCAACAAATTGCAAACCAACGACAGCACAATTCTCAATTCTTATATTTATGTCATCAAACCACAATGCTGCTTACTCAATAATTTCTCAAAATCCTCCGACAAATCTTTCTAGGAAAAATCAA


Gene Sequence:
>Vu_17219(-)
ATGTCGAGGATGAACTCAGAGAAGAAGCTTGGTGCAGGACGTGTGGTGGCTGTGGCCATTGAGAATAACAAGACCAGCCAACATGCTGCCAAGTGGGCAGTCGACAACCTTCTTCCCAAGGATCAATGTCTCTTGCTCATCCATGTCAGACAAAAATCATCCTCAGGTTGTTCCATATCTCATTCAAACCTTTACATAATGTTTAATATTCTATGATCTAAATAAGTTCTTAGGAATTACTACAATAATATTAAAAAGAAAAAAGAAAATACTTCATGTTGACATGCATATACACATTCCTGACTTCAATGCCTGATGAATGCAGGGAATTCCACCAACGAAGCTGTGGGTGACAACGAATCCAAGGAACTCTTCGAATCGTTTAGAGTTTTCTGCAATAGAAAAAGTGTTAGTTCTCGTGAAAACCTGTGTGATATCTCAGAACTAGTTCATGAACAAGATACTAAAATTGTTGACTTGTGTTTATTTCCGACAGATACAATGCAGAGAAGTGTTGTTGGAGGACATGGATATATCTAAGGCATTATTGGAAAACATTTCTGTGAATTCCATCGAGTTTCTGGTACTTGGGGCGCCATCAAGGGGTGGCATTGTTAGGTAAAGAACGTTTTCTCCTTTATCAATAATCATCTTCTTAATAACATTGAAATTCTAGTTTTGGTTGCTAACAGATCCCATTGAAATCAATATTCATGACAGGAGATTTAGAACAACGGATGTTCCAAGCTCTGTGTCAAAGGGAGCGCCACCATTCTGCACAGTGTATATAATTTCTAAAGGAAAAATCTCGAGTGTGAGATCTGCCACTGCTCCATTGGCTCCTAAACCTGCCGCACCACGTAACCAATTGCAGCCACAACAGCCACAGCCACTACAGCCGCAGCCACGCTACCAGCCACTGATGCGAAACCCTGAAGGACTTTTTGAATCTCATCAAACCCGCAACTACCCACCACGACGTATATGTCAATTCATTTTTCTCTTTATTTTCAATTTGCCATATCCAATCACGCCATTCTGATCTACCTGTCTCCATATATACAAATATAATTCATTTGAATTACTTAAATGCAGCTTCACAAGGGAGTGGGATACGCCAGATGGTGTTGGATGATGATGATATCATGTAAGTTACGATCAAGATTAAACGCTAATTAATACTAGCACAGTTGTTTGTAGAAATAAGATTTCACCGTTTATGGTATATATGGTCCTGCAGATCACCATTCACAAGGGCTGGAAAATCATACGAGTCTTCAAAACTTCCGGATTCTGACATATCATTTGTGAGCAGCGGAAGGCCAAGCATCGATCGAATATTCCCGACAATGTACGACGATTTGGACACTGCGAGTGGGAGGCTTTCGGGTGTTTCGGATTCTGACACCAGAAGCTTCGCTTCTTCAATGTCCTCGCAAACCAATAGCATTGATGACTACTCCTTCTCCTCGCAGTCAAGGTTATCAGACTGCACGGTACGTACATAGCAATCAAGAATGCATGCATGCACGTATGTGTAAGAAAGCAAATTAAAAGTCGATGTTTTTGTTTTCTGTAATTACAGGATGATGTTGAATTCGAGATGAGGAGGCTGAAGCAGGAACTGAAGCAGACGATGGATATGTACAGCTCGGCCTGCAAAGAAGCTATGACTGCAAAGCAGAGGGCGATGGAGCTTCAACGTTGGAAAGCGGAAGAACAGAAGAGATCGGAAGATTCGCAAACGGTTGATGCCTCGGCCGTACAATTCATGGAGATGGAGCAGGATAGAATCAGAGCAGAAGCCCTTGAAAAAATCGCCGCACTGGAAGCACAGAAGAGAATGACCCAAGTAGAGAGGAGGAAACCGAGTGAAAGCTTTGGACACGGCCCTGCCATGTACAGAAGGTACACCATTGAGGAAATTGAAGAGGCGACAAACATGTTTTCGGACTCTCTTAAGATCGGCGAAGGAGGTTATGGTCCTGTCTACAGGAGTGAACTGGATTGCACCCAGGTTGCCATCAAGGTCTTAAAGCCAGATGCAGCTCAAGGGCGCGAGCAGTTTCAACAGGAAGTATGGTTTCTTGCAATTTAACACACAAAAAAAAACGATTGCATGATAGATATGAAAAGAAACATGAACAAGTTTAAAATGATAAATTTGGTTGCTTTATGCAGGTAGAAGTGTTGAGTCGCATAAGGCATCCAAACATGGTTCTGTTGCTGGGGGCATGTCCGGAGTATGGTTGTCTTGTGTATGAGTACATGGCGAATGGAAGCTTGGATGAGTGCTTGTTCAGGAGAGGAAGCTCACGTCCTCCTCTTCCATGGCAGCTAAGGTTCCAAATTGCCGCAGAGATAGCAACAGGTCTGCTTTTCCTCCACCAGACGAAACCAGAGCCACTGGTCCACCGTGACCTAAAACCGGGCAACATTCTCCTTGACCGGAACTACGTGAGCAAGATCAGTGACGTGGGGTTGGCCAGGCTGGTGCCTCCTTCCGTTGCTGACAGCGTGACACAGTATCGCATGACTTCCACTGCCGGAACCTTCTGCTACATCGACCCGGAGTACCAGCAAACAGGCATGCTGGGAATCAAATCCGACATATACTCTCTGGGGATCATGCTTCTGCAATTGGTGACGGCGAGGCCTCCGATGGGTTTGACTCATCATGTTTCGAGATCCATCGAGAAAGGGACTTTTCCCGAGATGCTTGACCCAGCTGTTGAGGACTGGCCAGTTGAACATGCCATGCATTTCGCAAAGCTTTCCCTGGGATGTGCAGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTTGTCTTGCCTGAGCTCAATAAGCTCAGGGCATTTGCTGAAGAAAGCATGTCGCCTATGATGATGTTTGGACTTCGAACCGGAGGAAATGGCGGCGGCGGTGGAGGGTATATTCCAAGAAACAGTAACCCATCATCATCCACACATTCTGTCAGTGCCAGCTCCACTTAGTTTTTGCTTGGAAATGATTGTGATTCCTTAAATTTCCTCATCATCAAATACTGAACGAATATGTCTTGCATTGTAGGACACGAGTGACTTGTCGGGGTTCTCTGGATACGAAAGCCGCTCAAGCTCATCATCACAGGGGAGACTGTAATCCAAGTGGGTAAATATTCAGGCTCAAGCGTAGCACCACAGCTTTTTGGAAGTCCTCAACCCATGAAATGAATATGATATGAGGCAGCAGGATCATCATTCACAACACTCAGTCCTGTTTCATATCATGGATCATTGACAGCACTCGGAGAATATCCTCCGAGAAAATGTTGCAATCCTTCATTCTATTCCACTCCACAAGTTGATGCACAGAACAAACACAATTCATCGGACTTCAGCGTACTTTGTCTTTGTTTCTCAATATATATTCAACCAATTAATACAAACAAAGCATTGATGCAACTCTCTTAGAAAACTCTCTTTCGATTGGCTTCTTCACTTTACACAAATTAAAACGATTGCTTAATCTTTTTCTAAATTATATTTAGTTGTAAATACAATTAAATAAAGTTTGGAATCTATCTCACTTGCTCCACCGACATATTTTTACATTCATTTAATATATAATATAAAAGTAAAACATAATAAAAAATAATATTAAATAAATTGTGGCAATGCATTACGAGTGTTTTAGTCCACAAAACAATAATATAACATTAATATCCCAATTCCGAAATTGTGGCACTGCGTGCATGTGAGTTAGATTTTTGTGTAGATATTCGTTCATGCACTGCTCTAACTCTTTCTTTTGAGAGACTCCACAGGAAAGAGAGACGGAGTTGCTCACTCTTTCTGCTTCATCAATATCATTCAGAATTAATGGAGAAGTCTAATTCTAATCCCAGAAAATCATCAACGAACAGGAATAGAATGGTTTTGGAGAAAGGGGTTGTTGGGCTTGGAATAGTGGCAGCCATGAGTGTGACCAACATCAACAACTCCATTGATGTTGTTTCCTCTGCTAAACCTGCTGCAAACTTTTCCTCAAGCTATGACCTTTTCCATGCTTCCCCTCTCAGCACTGGAACCCGCTTTCTGTTTCCCACTCCTCATTTTCTCAACTCCTGCAACCTTTGCTACAAACATCTTCATGGGATCGACATCTTCATTTACAGGTTCTATTCGACTTTTGTTTTTGTCTGTAACTGTGGATACAGCAGTTTGACTTCAGCATGATTTTGTGATTAAGTCTGTAATTAGAGTTGTATGTAATAAATTAAGAAACTAATTAACAATTAAATGTCTTAATGCAGAGGCGAGAAAGCGTTTTGTAGTGCACAATGCCGTGAGGCTCACATTAGAAACTACGAACATGAGCAAGACAAGTACTACTACAAACACAATAATGCCCTCAATGTGTCTGTGCCTATTCTTGCAGCATGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322415